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Items: 49

1.

Silicon limitation facilitates virus infection and mortality of marine diatoms.

Kranzler CF, Krause JW, Brzezinski MA, Edwards BR, Biggs WP, Maniscalco M, McCrow JP, Van Mooy BAS, Bidle KD, Allen AE, Thamatrakoln K.

Nat Microbiol. 2019 Nov;4(11):1790-1797. doi: 10.1038/s41564-019-0502-x. Epub 2019 Jul 15.

PMID:
31308524
2.

Biochemical diversity of glycosphingolipid biosynthesis as a driver of Coccolithovirus competitive ecology.

Nissimov JI, Talmy D, Haramaty L, Fredricks HF, Zelzion E, Knowles B, Eren AM, Vandzura R, Laber CP, Schieler BM, Johns CT, More KD, Coolen MJL, Follows MJ, Bhattacharya D, Van Mooy BAS, Bidle KD.

Environ Microbiol. 2019 Jun;21(6):2182-2197. doi: 10.1111/1462-2920.14633. Epub 2019 May 20.

PMID:
31001863
3.

Nitric oxide production and antioxidant function during viral infection of the coccolithophore Emiliania huxleyi.

Schieler BM, Soni MV, Brown CM, Coolen MJL, Fredricks H, Van Mooy BAS, Hirsh DJ, Bidle KD.

ISME J. 2019 Apr;13(4):1019-1031. doi: 10.1038/s41396-018-0325-4. Epub 2019 Jan 3.

4.

Metacaspase involvement in programmed cell death of the marine cyanobacterium Trichodesmium.

Spungin D, Bidle KD, Berman-Frank I.

Environ Microbiol. 2019 Feb;21(2):667-681. doi: 10.1111/1462-2920.14512. Epub 2019 Jan 21.

PMID:
30585394
5.

Catalytic linkage between caspase activity and proteostasis in Archaea.

Seth-Pasricha M, Senn S, Sanman LE, Bogyo M, Nanda V, Bidle KA, Bidle KD.

Environ Microbiol. 2019 Jan;21(1):286-298. doi: 10.1111/1462-2920.14456. Epub 2019 Jan 8.

PMID:
30370585
6.

Light regulation of coccolithophore host-virus interactions.

Thamatrakoln K, Talmy D, Haramaty L, Maniscalco C, Latham JR, Knowles B, Natale F, Coolen MJL, Follows MJ, Bidle KD.

New Phytol. 2019 Feb;221(3):1289-1302. doi: 10.1111/nph.15459. Epub 2018 Oct 8.

7.

The mutual interplay between calcification and coccolithovirus infection.

Johns CT, Grubb AR, Nissimov JI, Natale F, Knapp V, Mui A, Fredricks HF, Van Mooy BAS, Bidle KD.

Environ Microbiol. 2019 Jun;21(6):1896-1915. doi: 10.1111/1462-2920.14362. Epub 2018 Sep 18.

PMID:
30043404
8.

Dynamics of transparent exopolymer particle production and aggregation during viral infection of the coccolithophore, Emiliania huxleyi.

Nissimov JI, Vandzura R, Johns CT, Natale F, Haramaty L, Bidle KD.

Environ Microbiol. 2018 Aug;20(8):2880-2897. doi: 10.1111/1462-2920.14261. Epub 2018 Aug 9.

PMID:
29921002
9.

Coccolithovirus facilitation of carbon export in the North Atlantic.

Laber CP, Hunter JE, Carvalho F, Collins JR, Hunter EJ, Schieler BM, Boss E, More K, Frada M, Thamatrakoln K, Brown CM, Haramaty L, Ossolinski J, Fredricks H, Nissimov JI, Vandzura R, Sheyn U, Lehahn Y, Chant RJ, Martins AM, Coolen MJL, Vardi A, DiTullio GR, Van Mooy BAS, Bidle KD.

Nat Microbiol. 2018 May;3(5):537-547. doi: 10.1038/s41564-018-0128-4. Epub 2018 Mar 12.

PMID:
29531367
10.

Expression profiling of host and virus during a coccolithophore bloom provides insights into the role of viral infection in promoting carbon export.

Sheyn U, Rosenwasser S, Lehahn Y, Barak-Gavish N, Rotkopf R, Bidle KD, Koren I, Schatz D, Vardi A.

ISME J. 2018 Mar;12(3):704-713. doi: 10.1038/s41396-017-0004-x. Epub 2018 Jan 15.

11.

Interrogating marine virus-host interactions and elemental transfer with BONCAT and nanoSIMS-based methods.

Pasulka AL, Thamatrakoln K, Kopf SH, Guan Y, Poulos B, Moradian A, Sweredoski MJ, Hess S, Sullivan MB, Bidle KD, Orphan VJ.

Environ Microbiol. 2018 Feb;20(2):671-692. doi: 10.1111/1462-2920.13996. Epub 2017 Dec 14.

PMID:
29159966
12.

Stress, death, and the biological glue of sinking matter.

Nissimov JI, Bidle KD.

J Phycol. 2017 Apr;53(2):241-244. doi: 10.1111/jpy.12506. No abstract available.

PMID:
28417470
13.

The interactive microbial ocean.

Brussaard CP, Bidle KD, Pedrós-Alió C, Legrand C.

Nat Microbiol. 2016 Dec 20;2:16255. doi: 10.1038/nmicrobiol.2016.255. No abstract available.

PMID:
27995930
14.

Programmed Cell Death in Unicellular Phytoplankton.

Bidle KD.

Curr Biol. 2016 Jul 11;26(13):R594-R607. doi: 10.1016/j.cub.2016.05.056. Review.

15.

A liposome-encapsulated spin trap for the detection of nitric oxide.

Hirsh DJ, Schieler BM, Fomchenko KM, Jordan ET, Bidle KD.

Free Radic Biol Med. 2016 Jul;96:199-210. doi: 10.1016/j.freeradbiomed.2016.04.026. Epub 2016 Apr 22.

PMID:
27112665
16.

BioDry: An Inexpensive, Low-Power Method to Preserve Aquatic Microbial Biomass at Room Temperature.

Tuorto SJ, Brown CM, Bidle KD, McGuinness LR, Kerkhof LJ.

PLoS One. 2015 Dec 28;10(12):e0144686. doi: 10.1371/journal.pone.0144686. eCollection 2015.

17.

Infection of phytoplankton by aerosolized marine viruses.

Sharoni S, Trainic M, Schatz D, Lehahn Y, Flores MJ, Bidle KD, Ben-Dor S, Rudich Y, Koren I, Vardi A.

Proc Natl Acad Sci U S A. 2015 May 26;112(21):6643-7. doi: 10.1073/pnas.1423667112. Epub 2015 May 11.

18.

Dose-dependent regulation of microbial activity on sinking particles by polyunsaturated aldehydes: Implications for the carbon cycle.

Edwards BR, Bidle KD, Van Mooy BA.

Proc Natl Acad Sci U S A. 2015 May 12;112(19):5909-14. doi: 10.1073/pnas.1422664112. Epub 2015 Apr 27.

19.

Temperature-induced viral resistance in Emiliania huxleyi (Prymnesiophyceae).

Kendrick BJ, DiTullio GR, Cyronak TJ, Fulton JM, Van Mooy BA, Bidle KD.

PLoS One. 2014 Nov 18;9(11):e112134. doi: 10.1371/journal.pone.0112134. eCollection 2014.

20.

Elucidating marine virus ecology through a unified heartbeat.

Bidle KD.

Proc Natl Acad Sci U S A. 2014 Nov 4;111(44):15606-7. doi: 10.1073/pnas.1417243111. Epub 2014 Oct 27. No abstract available.

21.

The molecular ecophysiology of programmed cell death in marine phytoplankton.

Bidle KD.

Ann Rev Mar Sci. 2015;7:341-75. doi: 10.1146/annurev-marine-010213-135014. Epub 2014 Sep 22. Review.

PMID:
25251265
22.

Decoupling physical from biological processes to assess the impact of viruses on a mesoscale algal bloom.

Lehahn Y, Koren I, Schatz D, Frada M, Sheyn U, Boss E, Efrati S, Rudich Y, Trainic M, Sharoni S, Laber C, DiTullio GR, Coolen MJ, Martins AM, Van Mooy BA, Bidle KD, Vardi A.

Curr Biol. 2014 Sep 8;24(17):2041-6. doi: 10.1016/j.cub.2014.07.046. Epub 2014 Aug 21.

23.

Attenuation of virus production at high multiplicities of infection in Aureococcus anophagefferens.

Brown CM, Bidle KD.

Virology. 2014 Oct;466-467:71-81. doi: 10.1016/j.virol.2014.07.023. Epub 2014 Aug 4.

24.

Low CO2 results in a rearrangement of carbon metabolism to support C4 photosynthetic carbon assimilation in Thalassiosira pseudonana.

Kustka AB, Milligan AJ, Zheng H, New AM, Gates C, Bidle KD, Reinfelder JR.

New Phytol. 2014 Nov;204(3):507-20. doi: 10.1111/nph.12926. Epub 2014 Jul 21.

25.

Genome of brown tide virus (AaV), the little giant of the Megaviridae, elucidates NCLDV genome expansion and host-virus coevolution.

Moniruzzaman M, LeCleir GR, Brown CM, Gobler CJ, Bidle KD, Wilson WH, Wilhelm SW.

Virology. 2014 Oct;466-467:60-70. doi: 10.1016/j.virol.2014.06.031. Epub 2014 Jul 14.

26.

Virus infection of Haptolina ericina and Phaeocystis pouchetii implicates evolutionary conservation of programmed cell death induction in marine haptophyte-virus interactions.

Ray JL, Haramaty L, Thyrhaug R, Fredricks HF, Van Mooy BA, Larsen A, Bidle KD, Sandaa RA.

J Plankton Res. 2014 Jul;36(4):943-955. Epub 2014 May 5.

27.

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing.

Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, Amaral-Zettler LA, Armbrust EV, Archibald JM, Bharti AK, Bell CJ, Beszteri B, Bidle KD, Cameron CT, Campbell L, Caron DA, Cattolico RA, Collier JL, Coyne K, Davy SK, Deschamps P, Dyhrman ST, Edvardsen B, Gates RD, Gobler CJ, Greenwood SJ, Guida SM, Jacobi JL, Jakobsen KS, James ER, Jenkins B, John U, Johnson MD, Juhl AR, Kamp A, Katz LA, Kiene R, Kudryavtsev A, Leander BS, Lin S, Lovejoy C, Lynn D, Marchetti A, McManus G, Nedelcu AM, Menden-Deuer S, Miceli C, Mock T, Montresor M, Moran MA, Murray S, Nadathur G, Nagai S, Ngam PB, Palenik B, Pawlowski J, Petroni G, Piganeau G, Posewitz MC, Rengefors K, Romano G, Rumpho ME, Rynearson T, Schilling KB, Schroeder DC, Simpson AG, Slamovits CH, Smith DR, Smith GJ, Smith SR, Sosik HM, Stief P, Theriot E, Twary SN, Umale PE, Vaulot D, Wawrik B, Wheeler GL, Wilson WH, Xu Y, Zingone A, Worden AZ.

PLoS Biol. 2014 Jun 24;12(6):e1001889. doi: 10.1371/journal.pbio.1001889. eCollection 2014 Jun. No abstract available.

28.

Novel molecular determinants of viral susceptibility and resistance in the lipidome of Emiliania huxleyi.

Fulton JM, Fredricks HF, Bidle KD, Vardi A, Kendrick BJ, DiTullio GR, Van Mooy BA.

Environ Microbiol. 2014 Apr;16(4):1137-49. doi: 10.1111/1462-2920.12358. Epub 2014 Jan 23.

PMID:
24330049
29.

Isolation and characterization of lipid rafts in Emiliania huxleyi: a role for membrane microdomains in host-virus interactions.

Rose SL, Fulton JM, Brown CM, Natale F, Van Mooy BA, Bidle KD.

Environ Microbiol. 2014 Apr;16(4):1150-66. doi: 10.1111/1462-2920.12357. Epub 2014 Jan 21.

PMID:
24330022
30.

Death-specific protein in a marine diatom regulates photosynthetic responses to iron and light availability.

Thamatrakoln K, Bailleul B, Brown CM, Gorbunov MY, Kustka AB, Frada M, Joliot PA, Falkowski PG, Bidle KD.

Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):20123-8. doi: 10.1073/pnas.1304727110. Epub 2013 Nov 25.

31.

Programmed cell death in the marine cyanobacterium Trichodesmium mediates carbon and nitrogen export.

Bar-Zeev E, Avishay I, Bidle KD, Berman-Frank I.

ISME J. 2013 Dec;7(12):2340-8. doi: 10.1038/ismej.2013.121. Epub 2013 Jul 25.

32.

Specificity of archaeal caspase activity in the extreme halophile Haloferax volcanii.

Seth-Pasricha M, Bidle KA, Bidle KD.

Environ Microbiol Rep. 2013 Apr;5(2):263-71.

33.

Host-virus dynamics and subcellular controls of cell fate in a natural coccolithophore population.

Vardi A, Haramaty L, Van Mooy BA, Fredricks HF, Kimmance SA, Larsen A, Bidle KD.

Proc Natl Acad Sci U S A. 2012 Nov 20;109(47):19327-32. doi: 10.1073/pnas.1208895109. Epub 2012 Nov 7.

34.

ASSESSING THE ROLE OF CASPASE ACTIVITY AND METACASPASE EXPRESSION ON VIRAL SUSCEPTIBILITY OF THE COCCOLITHOPHORE, EMILIANIA HUXLEYI (HAPTOPHYTA).

Bidle KD, Kwityn CJ.

J Phycol. 2012 Oct;48(5):1079-89. doi: 10.1111/j.1529-8817.2012.01209.x. Epub 2012 Aug 7.

PMID:
27011269
35.

In situ survey of life cycle phases of the coccolithophore Emiliania huxleyi (Haptophyta).

Frada MJ, Bidle KD, Probert I, de Vargas C.

Environ Microbiol. 2012 Jun;14(6):1558-69. doi: 10.1111/j.1462-2920.2012.02745.x. Epub 2012 Apr 17.

PMID:
22507290
36.

A chemical arms race at sea mediates algal host-virus interactions.

Bidle KD, Vardi A.

Curr Opin Microbiol. 2011 Aug;14(4):449-57. doi: 10.1016/j.mib.2011.07.013. Epub 2011 Aug 2.

PMID:
21816665
37.

Whole-genome expression analysis reveals a role for death-related genes in stress acclimation of the diatom Thalassiosira pseudonana.

Thamatrakoln K, Korenovska O, Niheu AK, Bidle KD.

Environ Microbiol. 2012 Jan;14(1):67-81. doi: 10.1111/j.1462-2920.2011.02468.x. Epub 2011 Mar 31.

PMID:
21453404
38.

Quantification of nitrogenase in Trichodesmium IMS 101: implications for iron limitation of nitrogen fixation in the ocean.

Whittaker S, Bidle KD, Kustka AB, Falkowski PG.

Environ Microbiol Rep. 2011 Feb;3(1):54-8. doi: 10.1111/j.1758-2229.2010.00187.x.

PMID:
23761231
39.

Tantalizing evidence for caspase-like protein expression and activity in the cellular stress response of Archaea.

Bidle KA, Haramaty L, Baggett N, Nannen J, Bidle KD.

Environ Microbiol. 2010 May;12(5):1161-72. doi: 10.1111/j.1462-2920.2010.02157.x. Epub 2010 Feb 3.

PMID:
20132282
40.

Viral glycosphingolipids induce lytic infection and cell death in marine phytoplankton.

Vardi A, Van Mooy BA, Fredricks HF, Popendorf KJ, Ossolinski JE, Haramaty L, Bidle KD.

Science. 2009 Nov 6;326(5954):861-5. doi: 10.1126/science.1177322.

41.

Diatom genomes come of age.

Vardi A, Thamatrakoln K, Bidle KD, Falkowski PG.

Genome Biol. 2008;9(12):245. doi: 10.1186/gb-2008-9-12-245. Review. Erratum in: Genome Biol. 2010;11(6):401.

42.

A diatom gene regulating nitric-oxide signaling and susceptibility to diatom-derived aldehydes.

Vardi A, Bidle KD, Kwityn C, Hirsh DJ, Thompson SM, Callow JA, Falkowski P, Bowler C.

Curr Biol. 2008 Jun 24;18(12):895-9. doi: 10.1016/j.cub.2008.05.037. Epub 2008 Jun 5.

43.
44.

Fossil genes and microbes in the oldest ice on earth.

Bidle KD, Lee S, Marchant DR, Falkowski PG.

Proc Natl Acad Sci U S A. 2007 Aug 14;104(33):13455-60. Epub 2007 Aug 8.

45.

Viral activation and recruitment of metacaspases in the unicellular coccolithophore, Emiliania huxleyi.

Bidle KD, Haramaty L, Barcelos E Ramos J, Falkowski P.

Proc Natl Acad Sci U S A. 2007 Apr 3;104(14):6049-54. Epub 2007 Mar 28.

46.

Cell death in planktonic, photosynthetic microorganisms.

Bidle KD, Falkowski PG.

Nat Rev Microbiol. 2004 Aug;2(8):643-55. Review. No abstract available.

PMID:
15263899
47.

Regulation of oceanic silicon and carbon preservation by temperature control on bacteria.

Bidle KD, Manganelli M, Azam F.

Science. 2002 Dec 6;298(5600):1980-4.

48.

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