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Items: 7

1.

MHCquant: Automated and Reproducible Data Analysis for Immunopeptidomics.

Bichmann L, Nelde A, Ghosh M, Heumos L, Mohr C, Peltzer A, Kuchenbecker L, Sachsenberg T, Walz JS, Stevanović S, Rammensee HG, Kohlbacher O.

J Proteome Res. 2019 Nov 1;18(11):3876-3884. doi: 10.1021/acs.jproteome.9b00313. Epub 2019 Oct 22.

PMID:
31589052
2.

Multi-omics discovery of exome-derived neoantigens in hepatocellular carcinoma.

Löffler MW, Mohr C, Bichmann L, Freudenmann LK, Walzer M, Schroeder CM, Trautwein N, Hilke FJ, Zinser RS, Mühlenbruch L, Kowalewski DJ, Schuster H, Sturm M, Matthes J, Riess O, Czemmel S, Nahnsen S, Königsrainer I, Thiel K, Nadalin S, Beckert S, Bösmüller H, Fend F, Velic A, Maček B, Haen SP, Buonaguro L, Kohlbacher O, Stevanović S, Königsrainer A; HEPAVAC Consortium, Rammensee HG.

Genome Med. 2019 Apr 30;11(1):28. doi: 10.1186/s13073-019-0636-8.

3.

The HLA ligandome landscape of chronic myeloid leukemia delineates novel T-cell epitopes for immunotherapy.

Bilich T, Nelde A, Bichmann L, Roerden M, Salih HR, Kowalewski DJ, Schuster H, Tsou CC, Marcu A, Neidert MC, Lübke M, Rieth J, Schemionek M, Brümmendorf TH, Vucinic V, Niederwieser D, Bauer J, Märklin M, Peper JK, Klein R, Kohlbacher O, Kanz L, Rammensee HG, Stevanović S, Walz JS.

Blood. 2019 Feb 7;133(6):550-565. doi: 10.1182/blood-2018-07-866830. Epub 2018 Dec 10.

PMID:
30530751
4.

Corrigendum to "Docking assay of small molecule antivirals to p7 of HCV" [Comput. Biol. Chem. 53 (2014) 308-317].

Bichmann L, Wang YT, Fischer WB.

Comput Biol Chem. 2018 Feb;72:199. doi: 10.1016/j.compbiolchem.2017.12.001. Epub 2017 Dec 13. No abstract available.

PMID:
29248356
5.

CryptoSite: Expanding the Druggable Proteome by Characterization and Prediction of Cryptic Binding Sites.

Cimermancic P, Weinkam P, Rettenmaier TJ, Bichmann L, Keedy DA, Woldeyes RA, Schneidman-Duhovny D, Demerdash ON, Mitchell JC, Wells JA, Fraser JS, Sali A.

J Mol Biol. 2016 Feb 22;428(4):709-719. doi: 10.1016/j.jmb.2016.01.029. Epub 2016 Feb 5.

6.

Coarse-grained model of glycosaminoglycans.

Samsonov SA, Bichmann L, Pisabarro MT.

J Chem Inf Model. 2015 Jan 26;55(1):114-24. doi: 10.1021/ci500669w. Epub 2014 Dec 19.

PMID:
25490039
7.

Docking assay of small molecule antivirals to p7 of HCV.

Bichmann L, Wang YT, Fischer WB.

Comput Biol Chem. 2014 Dec;53PB:308-317. doi: 10.1016/j.compbiolchem.2014.11.001. Epub 2014 Nov 13. Erratum in: Comput Biol Chem. 2017 Dec 13;:.

PMID:
25462337

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