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Items: 37

1.

Haemopedia RNA-seq: a database of gene expression during haematopoiesis in mice and humans.

Choi J, Baldwin TM, Wong M, Bolden JE, Fairfax KA, Lucas EC, Cole R, Biben C, Morgan C, Ramsay KA, Ng AP, Kauppi M, Corcoran LM, Shi W, Wilson N, Wilson MJ, Alexander WS, Hilton DJ, de Graaf CA.

Nucleic Acids Res. 2019 Jan 8;47(D1):D780-D785. doi: 10.1093/nar/gky1020.

2.

scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data.

Tian L, Su S, Dong X, Amann-Zalcenstein D, Biben C, Seidi A, Hilton DJ, Naik SH, Ritchie ME.

PLoS Comput Biol. 2018 Aug 10;14(8):e1006361. doi: 10.1371/journal.pcbi.1006361. eCollection 2018 Aug.

3.

Point mutations in murine Nkx2-5 phenocopy human congenital heart disease and induce pathogenic Wnt signaling.

Furtado MB, Wilmanns JC, Chandran A, Perera J, Hon O, Biben C, Willow TJ, Nim HT, Kaur G, Simonds S, Wu Q, Willians D, Salimova E, Plachta N, Denegre JM, Murray SA, Fatkin D, Cowley M, Pearson JT, Kaye D, Ramialison M, Harvey RP, Rosenthal NA, Costa MW.

JCI Insight. 2017 Mar 23;2(6):e88271. doi: 10.1172/jci.insight.88271.

4.

Haemopedia: An Expression Atlas of Murine Hematopoietic Cells.

de Graaf CA, Choi J, Baldwin TM, Bolden JE, Fairfax KA, Robinson AJ, Biben C, Morgan C, Ramsay K, Ng AP, Kauppi M, Kruse EA, Sargeant TJ, Seidenman N, D'Amico A, D'Ombrain MC, Lucas EC, Koernig S, Baz Morelli A, Wilson MJ, Dower SK, Williams B, Heazlewood SY, Hu Y, Nilsson SK, Wu L, Smyth GK, Alexander WS, Hilton DJ.

Stem Cell Reports. 2016 Sep 13;7(3):571-582. doi: 10.1016/j.stemcr.2016.07.007. Epub 2016 Aug 4.

5.

Setdb1-mediated H3K9 methylation is enriched on the inactive X and plays a role in its epigenetic silencing.

Keniry A, Gearing LJ, Jansz N, Liu J, Holik AZ, Hickey PF, Kinkel SA, Moore DL, Breslin K, Chen K, Liu R, Phillips C, Pakusch M, Biben C, Sheridan JM, Kile BT, Carmichael C, Ritchie ME, Hilton DJ, Blewitt ME.

Epigenetics Chromatin. 2016 May 18;9:16. doi: 10.1186/s13072-016-0064-6. eCollection 2016.

6.

A novel conditional mouse model for Nkx2-5 reveals transcriptional regulation of cardiac ion channels.

Furtado MB, Wilmanns JC, Chandran A, Tonta M, Biben C, Eichenlaub M, Coleman HA, Berger S, Bouveret R, Singh R, Harvey RP, Ramialison M, Pearson JT, Parkington HC, Rosenthal NA, Costa MW.

Differentiation. 2016 Jan-Mar;91(1-3):29-41. doi: 10.1016/j.diff.2015.12.003. Epub 2016 Feb 17.

PMID:
26897459
7.

A lineage of diploid platelet-forming cells precedes polyploid megakaryocyte formation in the mouse embryo.

Potts KS, Sargeant TJ, Markham JF, Shi W, Biben C, Josefsson EC, Whitehead LW, Rogers KL, Liakhovitskaia A, Smyth GK, Kile BT, Medvinsky A, Alexander WS, Hilton DJ, Taoudi S.

Blood. 2014 Oct 23;124(17):2725-9. doi: 10.1182/blood-2014-02-559468. Epub 2014 Jul 25.

8.

Adult cardiac-resident MSC-like stem cells with a proepicardial origin.

Chong JJ, Chandrakanthan V, Xaymardan M, Asli NS, Li J, Ahmed I, Heffernan C, Menon MK, Scarlett CJ, Rashidianfar A, Biben C, Zoellner H, Colvin EK, Pimanda JE, Biankin AV, Zhou B, Pu WT, Prall OW, Harvey RP.

Cell Stem Cell. 2011 Dec 2;9(6):527-40. doi: 10.1016/j.stem.2011.10.002.

9.

NKX2-5(eGFP/w) hESCs for isolation of human cardiac progenitors and cardiomyocytes.

Elliott DA, Braam SR, Koutsis K, Ng ES, Jenny R, Lagerqvist EL, Biben C, Hatzistavrou T, Hirst CE, Yu QC, Skelton RJ, Ward-van Oostwaard D, Lim SM, Khammy O, Li X, Hawes SM, Davis RP, Goulburn AL, Passier R, Prall OW, Haynes JM, Pouton CW, Kaye DM, Mummery CL, Elefanty AG, Stanley EG.

Nat Methods. 2011 Oct 23;8(12):1037-40. doi: 10.1038/nmeth.1740.

PMID:
22020065
10.

Characterization of Pitx2c expression in the mouse heart using a reporter transgene.

Furtado MB, Biben C, Shiratori H, Hamada H, Harvey RP.

Dev Dyn. 2011 Jan;240(1):195-203. doi: 10.1002/dvdy.22492.

11.

BMP/SMAD1 signaling sets a threshold for the left/right pathway in lateral plate mesoderm and limits availability of SMAD4.

Furtado MB, Solloway MJ, Jones VJ, Costa MW, Biben C, Wolstein O, Preis JI, Sparrow DB, Saga Y, Dunwoodie SL, Robertson EJ, Tam PP, Harvey RP.

Genes Dev. 2008 Nov 1;22(21):3037-49. doi: 10.1101/gad.1682108.

12.

Disrupted cardiac development but normal hematopoiesis in mice deficient in the second CXCL12/SDF-1 receptor, CXCR7.

Sierro F, Biben C, Martínez-Muñoz L, Mellado M, Ransohoff RM, Li M, Woehl B, Leung H, Groom J, Batten M, Harvey RP, Martínez-A C, Mackay CR, Mackay F.

Proc Natl Acad Sci U S A. 2007 Sep 11;104(37):14759-64. Epub 2007 Sep 5.

13.

An Nkx2-5/Bmp2/Smad1 negative feedback loop controls heart progenitor specification and proliferation.

Prall OW, Menon MK, Solloway MJ, Watanabe Y, Zaffran S, Bajolle F, Biben C, McBride JJ, Robertson BR, Chaulet H, Stennard FA, Wise N, Schaft D, Wolstein O, Furtado MB, Shiratori H, Chien KR, Hamada H, Black BL, Saga Y, Robertson EJ, Buckingham ME, Harvey RP.

Cell. 2007 Mar 9;128(5):947-59.

14.

A tyrosine-rich domain within homeodomain transcription factor Nkx2-5 is an essential element in the early cardiac transcriptional regulatory machinery.

Elliott DA, Solloway MJ, Wise N, Biben C, Costa MW, Furtado MB, Lange M, Dunwoodie S, Harvey RP.

Development. 2006 Apr;133(7):1311-22. Epub 2006 Mar 1.

15.

Quantitative trait loci modifying cardiac atrial septal morphology and risk of patent foramen ovale in the mouse.

Kirk EP, Hyun C, Thomson PC, Lai D, Castro ML, Biben C, Buckley MF, Martin IC, Moran C, Harvey RP.

Circ Res. 2006 Mar 17;98(5):651-8. Epub 2006 Feb 16.

PMID:
16484617
16.

Murine T-box transcription factor Tbx20 acts as a repressor during heart development, and is essential for adult heart integrity, function and adaptation.

Stennard FA, Costa MW, Lai D, Biben C, Furtado MB, Solloway MJ, McCulley DJ, Leimena C, Preis JI, Dunwoodie SL, Elliott DE, Prall OW, Black BL, Fatkin D, Harvey RP.

Development. 2005 May;132(10):2451-62. Epub 2005 Apr 20.

17.

Edd, the murine hyperplastic disc gene, is essential for yolk sac vascularization and chorioallantoic fusion.

Saunders DN, Hird SL, Withington SL, Dunwoodie SL, Henderson MJ, Biben C, Sutherland RL, Ormandy CJ, Watts CK.

Mol Cell Biol. 2004 Aug;24(16):7225-34.

18.

Homeodomain factor Nkx2-5 in heart development and disease.

Harvey RP, Lai D, Elliott D, Biben C, Solloway M, Prall O, Stennard F, Schindeler A, Groves N, Lavulo L, Hyun C, Yeoh T, Costa M, Furtado M, Kirk E.

Cold Spring Harb Symp Quant Biol. 2002;67:107-14. Review. No abstract available.

PMID:
12858530
19.

Hop is an unusual homeobox gene that modulates cardiac development.

Chen F, Kook H, Milewski R, Gitler AD, Lu MM, Li J, Nazarian R, Schnepp R, Jen K, Biben C, Runke G, Mackay JP, Novotny J, Schwartz RJ, Harvey RP, Mullins MC, Epstein JA.

Cell. 2002 Sep 20;110(6):713-23.

20.

Efficient Cre-mediated deletion in cardiac progenitor cells conferred by a 3'UTR-ires-Cre allele of the homeobox gene Nkx2-5.

Stanley EG, Biben C, Elefanty A, Barnett L, Koentgen F, Robb L, Harvey RP.

Int J Dev Biol. 2002;46(4):431-9.

21.
22.

The small muscle-specific protein Csl modifies cell shape and promotes myocyte fusion in an insulin-like growth factor 1-dependent manner.

Palmer S, Groves N, Schindeler A, Yeoh T, Biben C, Wang CC, Sparrow DB, Barnett L, Jenkins NA, Copeland NG, Koentgen F, Mohun T, Harvey RP.

J Cell Biol. 2001 May 28;153(5):985-98.

23.

Cardiac septal and valvular dysmorphogenesis in mice heterozygous for mutations in the homeobox gene Nkx2-5.

Biben C, Weber R, Kesteven S, Stanley E, McDonald L, Elliott DA, Barnett L, Köentgen F, Robb L, Feneley M, Harvey RP.

Circ Res. 2000 Nov 10;87(10):888-95.

PMID:
11073884
24.

Homeodomain factor Nkx2-3 controls regional expression of leukocyte homing coreceptor MAdCAM-1 in specialized endothelial cells of the viscera.

Wang CC, Biben C, Robb L, Nassir F, Barnett L, Davidson NO, Koentgen F, Tarlinton D, Harvey RP.

Dev Biol. 2000 Aug 15;224(2):152-67.

25.

Chamber formation and morphogenesis in the developing mammalian heart.

Christoffels VM, Habets PE, Franco D, Campione M, de Jong F, Lamers WH, Bao ZZ, Palmer S, Biben C, Harvey RP, Moorman AF.

Dev Biol. 2000 Jul 15;223(2):266-78. Erratum in: Dev Biol 2000 Sep 1;225(1):266.

26.

Targeted insertion of a lacZ reporter gene into the mouse Cer1 locus reveals complex and dynamic expression during embryogenesis.

Stanley EG, Biben C, Allison J, Hartley L, Wicks IP, Campbell IK, McKinley M, Barnett L, Koentgen F, Robb L, Harvey RP.

Genesis. 2000 Apr;26(4):259-64.

PMID:
10748464
27.

The cardiac expression of striated muscle LIM protein 1 (SLIM1) is restricted to the outflow tract of the developing heart.

Brown S, Biben C, Ooms LM, Maimone M, McGrath MJ, Gurung R, Harvey RP, Mitchell CA.

J Mol Cell Cardiol. 1999 Apr;31(4):837-43.

PMID:
10329211
28.

DAN is a secreted glycoprotein related to Xenopus cerberus.

Stanley E, Biben C, Kotecha S, Fabri L, Tajbakhsh S, Wang CC, Hatzistavrou T, Roberts B, Drinkwater C, Lah M, Buckingham M, Hilton D, Nash A, Mohun T, Harvey RP.

Mech Dev. 1998 Oct;77(2):173-84.

29.
30.

Expression of NK-2 class homeobox gene Nkx2-6 in foregut endoderm and heart.

Biben C, Hatzistavrou T, Harvey RP.

Mech Dev. 1998 Apr;73(1):125-7.

31.

Murine cerberus homologue mCer-1: a candidate anterior patterning molecule.

Biben C, Stanley E, Fabri L, Kotecha S, Rhinn M, Drinkwater C, Lah M, Wang CC, Nash A, Hilton D, Ang SL, Mohun T, Harvey RP.

Dev Biol. 1998 Feb 15;194(2):135-51.

32.

Embryonic and fetal myogenic programs act through separate enhancers at the MLC1F/3F locus.

Kelly RG, Zammit PS, Schneider A, Alonso S, Biben C, Buckingham ME.

Dev Biol. 1997 Jul 15;187(2):183-99.

34.

Homeobox genes and heart development.

Biben C, Palmer S, Elliott DA, Harvey RP.

Cold Spring Harb Symp Quant Biol. 1997;62:395-403. No abstract available.

PMID:
9598374
36.

Novel muscle-specific enhancer sequences upstream of the cardiac actin gene.

Biben C, Kirschbaum BJ, Garner I, Buckingham M.

Mol Cell Biol. 1994 May;14(5):3504-13.

37.

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