Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 83

1.

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage.

Edwards RA, Vega AA, Norman HM, Ohaeri M, Levi K, Dinsdale EA, Cinek O, Aziz RK, McNair K, Barr JJ, Bibby K, Brouns SJJ, Cazares A, de Jonge PA, Desnues C, Díaz Muñoz SL, Fineran PC, Kurilshikov A, Lavigne R, Mazankova K, McCarthy DT, Nobrega FL, Reyes Muñoz A, Tapia G, Trefault N, Tyakht AV, Vinuesa P, Wagemans J, Zhernakova A, Aarestrup FM, Ahmadov G, Alassaf A, Anton J, Asangba A, Billings EK, Cantu VA, Carlton JM, Cazares D, Cho GS, Condeff T, Cortés P, Cranfield M, Cuevas DA, De la Iglesia R, Decewicz P, Doane MP, Dominy NJ, Dziewit L, Elwasila BM, Eren AM, Franz C, Fu J, Garcia-Aljaro C, Ghedin E, Gulino KM, Haggerty JM, Head SR, Hendriksen RS, Hill C, Hyöty H, Ilina EN, Irwin MT, Jeffries TC, Jofre J, Junge RE, Kelley ST, Khan Mirzaei M, Kowalewski M, Kumaresan D, Leigh SR, Lipson D, Lisitsyna ES, Llagostera M, Maritz JM, Marr LC, McCann A, Molshanski-Mor S, Monteiro S, Moreira-Grez B, Morris M, Mugisha L, Muniesa M, Neve H, Nguyen NP, Nigro OD, Nilsson AS, O'Connell T, Odeh R, Oliver A, Piuri M, Prussin Ii AJ, Qimron U, Quan ZX, Rainetova P, Ramírez-Rojas A, Raya R, Reasor K, Rice GAO, Rossi A, Santos R, Shimashita J, Stachler EN, Stene LC, Strain R, Stumpf R, Torres PJ, Twaddle A, Ugochi Ibekwe M, Villagra N, Wandro S, White B, Whiteley A, Whiteson KL, Wijmenga C, Zambrano MM, Zschach H, Dutilh BE.

Nat Microbiol. 2019 Jul 8. doi: 10.1038/s41564-019-0494-6. [Epub ahead of print]

PMID:
31285584
2.

Upregulation of peroxide scavenging enzymes and multidrug efflux proteins highlight an active sodium hypochlorite response in Pseudomonas fluorescens biofilms.

Lipus D, Vikram A, Gulliver D, Bibby K.

Biofouling. 2019 Mar;35(3):329-339. doi: 10.1080/08927014.2019.1605357. Epub 2019 May 8.

PMID:
31066290
3.

Glutaraldehyde inhibits biological treatment of organic additives in hydraulic fracturing produced water.

Akyon B, Lipus D, Bibby K.

Sci Total Environ. 2019 May 20;666:1161-1168. doi: 10.1016/j.scitotenv.2019.02.056. Epub 2019 Feb 14.

PMID:
30970481
4.

Seasonal dynamics of DNA and RNA viral bioaerosol communities in a daycare center.

Prussin AJ 2nd, Torres PJ, Shimashita J, Head SR, Bibby KJ, Kelley ST, Marr LC.

Microbiome. 2019 Apr 1;7(1):53. doi: 10.1186/s40168-019-0672-z.

5.

Critical issues in application of molecular methods to environmental virology.

Hamza IA, Bibby K.

J Virol Methods. 2019 Apr;266:11-24. doi: 10.1016/j.jviromet.2019.01.008. Epub 2019 Jan 16. Review.

PMID:
30659861
6.

Characterization and biological removal of organic compounds from hydraulic fracturing produced water.

Akyon B, McLaughlin M, Hernández F, Blotevogel J, Bibby K.

Environ Sci Process Impacts. 2019 Feb 21;21(2):279-290. doi: 10.1039/c8em00354h.

PMID:
30451271
7.

Insights into microbial community structure and function from a shallow, simulated CO2 -leakage aquifer demonstrate microbial selection and adaptation.

Gulliver D, Lipus D, Ross D, Bibby K.

Environ Microbiol Rep. 2019 Jun;11(3):338-351. doi: 10.1111/1758-2229.12675. Epub 2018 Aug 5.

PMID:
29984552
8.

Correlation of crAssphage qPCR Markers with Culturable and Molecular Indicators of Human Fecal Pollution in an Impacted Urban Watershed.

Stachler E, Akyon B, de Carvalho NA, Ference C, Bibby K.

Environ Sci Technol. 2018 Jul 3;52(13):7505-7512. doi: 10.1021/acs.est.8b00638. Epub 2018 Jun 19.

PMID:
29874457
9.

Environmental sources of community-acquired legionnaires' disease: A review.

Orkis LT, Harrison LH, Mertz KJ, Brooks MM, Bibby KJ, Stout JE.

Int J Hyg Environ Health. 2018 Jun;221(5):764-774. doi: 10.1016/j.ijheh.2018.04.013. Epub 2018 Apr 30. Review.

PMID:
29729999
10.

Microbial communities in Bakken region produced water.

Lipus D, Roy D, Khan E, Ross D, Vikram A, Gulliver D, Hammack R, Bibby K.

FEMS Microbiol Lett. 2018 Jun 1;365(12). doi: 10.1093/femsle/fny107.

PMID:
29688457
11.

Intestinal epithelial Toll-like receptor 4 prevents metabolic syndrome by regulating interactions between microbes and intestinal epithelial cells in mice.

Lu P, Sodhi CP, Yamaguchi Y, Jia H, Prindle T Jr, Fulton WB, Vikram A, Bibby KJ, Morowitz MJ, Hackam DJ.

Mucosal Immunol. 2018 May;11(3):727-740. doi: 10.1038/mi.2017.114. Epub 2018 Jan 24.

12.

Communicating the promise, risks, and ethics of large-scale, open space microbiome and metagenome research.

Shamarina D, Stoyantcheva I, Mason CE, Bibby K, Elhaik E.

Microbiome. 2017 Oct 4;5(1):132. doi: 10.1186/s40168-017-0349-4.

13.

Quantitative CrAssphage PCR Assays for Human Fecal Pollution Measurement.

Stachler E, Kelty C, Sivaganesan M, Li X, Bibby K, Shanks OC.

Environ Sci Technol. 2017 Aug 15;51(16):9146-9154. doi: 10.1021/acs.est.7b02703. Epub 2017 Jul 25.

PMID:
28700235
14.

Evaluation of Phi6 Persistence and Suitability as an Enveloped Virus Surrogate.

Aquino de Carvalho N, Stachler EN, Cimabue N, Bibby K.

Environ Sci Technol. 2017 Aug 1;51(15):8692-8700. doi: 10.1021/acs.est.7b01296. Epub 2017 Jul 13.

PMID:
28657725
15.

Centralized Drinking Water Treatment Operations Shape Bacterial and Fungal Community Structure.

Ma X, Vikram A, Casson L, Bibby K.

Environ Sci Technol. 2017 Jul 5;51(13):7648-7657. doi: 10.1021/acs.est.7b00768. Epub 2017 Jun 21.

PMID:
28562026
16.

Free chlorine and monochloramine inactivation kinetics of Aspergillus and Penicillium in drinking water.

Ma X, Bibby K.

Water Res. 2017 Sep 1;120:265-271. doi: 10.1016/j.watres.2017.04.064. Epub 2017 Apr 29.

PMID:
28501787
17.

Risks from Ebolavirus Discharge from Hospitals to Sewer Workers.

Haas CN, Rycroft T, Bibby K, Casson L.

Water Environ Res. 2017 Apr 1;89(4):357-368. doi: 10.2175/106143017X14839994523181.

PMID:
28377005
18.

Draft Genome Sequence of Pseudomonas sp. BDAL1 Reconstructed from a Bakken Shale Hydraulic Fracturing-Produced Water Storage Tank Metagenome.

Lipus D, Ross D, Bibby K, Gulliver D.

Genome Announc. 2017 Mar 16;5(11). pii: e00033-17. doi: 10.1128/genomeA.00033-17.

19.

Research Needs for Wastewater Handling in Virus Outbreak Response.

Bibby K, Aquino de Carvalho N, Wigginton K.

Environ Sci Technol. 2017 Mar 7;51(5):2534-2535. doi: 10.1021/acs.est.6b06492. Epub 2017 Feb 14. No abstract available.

PMID:
28195709
20.

Predominance and Metabolic Potential of Halanaerobium spp. in Produced Water from Hydraulically Fractured Marcellus Shale Wells.

Lipus D, Vikram A, Ross D, Bain D, Gulliver D, Hammack R, Bibby K.

Appl Environ Microbiol. 2017 Mar 31;83(8). pii: e02659-16. doi: 10.1128/AEM.02659-16. Print 2017 Apr 15.

21.

Disinfection of Ebola Virus in Sterilized Municipal Wastewater.

Bibby K, Fischer RJ, Casson LW, de Carvalho NA, Haas CN, Munster VJ.

PLoS Negl Trop Dis. 2017 Feb 1;11(2):e0005299. doi: 10.1371/journal.pntd.0005299. eCollection 2017 Feb.

22.

Efficient Low-pH Iron Removal by a Microbial Iron Oxide Mound Ecosystem at Scalp Level Run.

Grettenberger CL, Pearce AR, Bibby KJ, Jones DS, Burgos WD, Macalady JL.

Appl Environ Microbiol. 2017 Mar 17;83(7). pii: e00015-17. doi: 10.1128/AEM.00015-17. Print 2017 Apr 1.

23.

Draft Genome Sequence of Methanohalophilus mahii Strain DAL1 Reconstructed from a Hydraulic Fracturing-Produced Water Metagenome.

Lipus D, Vikram A, Ross DE, Bibby K.

Genome Announc. 2016 Sep 1;4(5). pii: e00899-16. doi: 10.1128/genomeA.00899-16.

24.

Metatranscriptome analysis of active microbial communities in produced water samples from the Marcellus Shale.

Vikram A, Lipus D, Bibby K.

Microb Ecol. 2016 Oct;72(3):571-81. doi: 10.1007/s00248-016-0811-z. Epub 2016 Jul 25.

PMID:
27457653
25.

Pulmonary Th17 Antifungal Immunity Is Regulated by the Gut Microbiome.

McAleer JP, Nguyen NL, Chen K, Kumar P, Ricks DM, Binnie M, Armentrout RA, Pociask DA, Hein A, Yu A, Vikram A, Bibby K, Umesaki Y, Rivera A, Sheppard D, Ouyang W, Hooper LV, Kolls JK.

J Immunol. 2016 Jul 1;197(1):97-107. doi: 10.4049/jimmunol.1502566. Epub 2016 May 23.

26.

Geochemical and Temporal Influences on the Enrichment of Acidophilic Iron-Oxidizing Bacterial Communities.

Sheng Y, Bibby K, Grettenberger C, Kaley B, Macalady JL, Wang G, Burgos WD.

Appl Environ Microbiol. 2016 May 31;82(12):3611-3621. doi: 10.1128/AEM.00917-16. Print 2016 Jun 15.

27.

Intestinal Interleukin-17 Receptor Signaling Mediates Reciprocal Control of the Gut Microbiota and Autoimmune Inflammation.

Kumar P, Monin L, Castillo P, Elsegeiny W, Horne W, Eddens T, Vikram A, Good M, Schoenborn AA, Bibby K, Montelaro RC, Metzger DW, Gulati AS, Kolls JK.

Immunity. 2016 Mar 15;44(3):659-671. doi: 10.1016/j.immuni.2016.02.007.

28.

Seasonal Dynamics of the Airborne Bacterial Community and Selected Viruses in a Children's Daycare Center.

Prussin AJ 2nd, Vikram A, Bibby KJ, Marr LC.

PLoS One. 2016 Mar 4;11(3):e0151004. doi: 10.1371/journal.pone.0151004. eCollection 2016.

29.

Impacts of Pristine and Transformed Ag and Cu Engineered Nanomaterials on Surficial Sediment Microbial Communities Appear Short-Lived.

Moore JD, Stegemeier JP, Bibby K, Marinakos SM, Lowry GV, Gregory KB.

Environ Sci Technol. 2016 Mar 1;50(5):2641-51. doi: 10.1021/acs.est.5b05054. Epub 2016 Feb 18.

PMID:
26841726
30.

Arsenic induces structural and compositional colonic microbiome change and promotes host nitrogen and amino acid metabolism.

Dheer R, Patterson J, Dudash M, Stachler EN, Bibby KJ, Stolz DB, Shiva S, Wang Z, Hazen SL, Barchowsky A, Stolz JF.

Toxicol Appl Pharmacol. 2015 Dec 15;289(3):397-408. doi: 10.1016/j.taap.2015.10.020. Epub 2015 Oct 31.

31.

Persistence of Ebola Virus in Sterilized Wastewater.

Bibby K, Fischer RJ, Casson LW, Stachler E, Haas CN, Munster VJ.

Environ Sci Technol Lett. 2015 Sep 8;2(9):245-249. Epub 2015 Aug 17.

32.

Microbial mats as a biological treatment approach for saline wastewaters: the case of produced water from hydraulic fracturing.

Akyon B, Stachler E, Wei N, Bibby K.

Environ Sci Technol. 2015 May 19;49(10):6172-80. doi: 10.1021/es505142t. Epub 2015 Apr 28.

PMID:
25867284
33.

Efflux as a glutaraldehyde resistance mechanism in Pseudomonas fluorescens and Pseudomonas aeruginosa biofilms.

Vikram A, Bomberger JM, Bibby KJ.

Antimicrob Agents Chemother. 2015;59(6):3433-40. doi: 10.1128/AAC.05152-14. Epub 2015 Mar 30.

34.

Fungal diversity and presence of potentially pathogenic fungi in a hospital hot water system treated with on-site monochloramine.

Ma X, Baron JL, Vikram A, Stout JE, Bibby K.

Water Res. 2015 Mar 15;71:197-206. doi: 10.1016/j.watres.2014.12.052. Epub 2015 Jan 8.

PMID:
25618520
35.

From commensalism to mutualism: integrating the microbial ecology, building science, and indoor air communities to advance research on the indoor microbiome.

Stephens B, Adams RI, Bhangar S, Bibby K, Waring MS.

Indoor Air. 2015 Feb;25(1):1-3. doi: 10.1111/ina.12167. No abstract available.

PMID:
25594131
36.

The functional potential of microbial communities in hydraulic fracturing source water and produced water from natural gas extraction characterized by metagenomic sequencing.

Mohan AM, Bibby KJ, Lipus D, Hammack RW, Gregory KB.

PLoS One. 2014 Oct 22;9(10):e107682. doi: 10.1371/journal.pone.0107682. eCollection 2014.

37.

Produced water exposure alters bacterial response to biocides.

Vikram A, Lipus D, Bibby K.

Environ Sci Technol. 2014 Nov 4;48(21):13001-9. doi: 10.1021/es5036915. Epub 2014 Oct 22.

PMID:
25279933
38.

Thermodynamic controls on the kinetics of microbial low-pH Fe(II) oxidation.

Larson LN, Sánchez-España J, Kaley B, Sheng Y, Bibby K, Burgos WD.

Environ Sci Technol. 2014 Aug 19;48(16):9246-54. doi: 10.1021/es501322d. Epub 2014 Aug 6.

PMID:
25072394
39.

Shift in the microbial ecology of a hospital hot water system following the introduction of an on-site monochloramine disinfection system.

Baron JL, Vikram A, Duda S, Stout JE, Bibby K.

PLoS One. 2014 Jul 17;9(7):e102679. doi: 10.1371/journal.pone.0102679. eCollection 2014.

40.

Challenges of studying viral aerosol metagenomics and communities in comparison with bacterial and fungal aerosols.

Prussin AJ 2nd, Marr LC, Bibby KJ.

FEMS Microbiol Lett. 2014 Aug;357(1):1-9. doi: 10.1111/1574-6968.12487. Epub 2014 Jun 23. Review.

41.

Lactobacillus rhamnosus HN001 decreases the severity of necrotizing enterocolitis in neonatal mice and preterm piglets: evidence in mice for a role of TLR9.

Good M, Sodhi CP, Ozolek JA, Buck RH, Goehring KC, Thomas DL, Vikram A, Bibby K, Morowitz MJ, Firek B, Lu P, Hackam DJ.

Am J Physiol Gastrointest Liver Physiol. 2014 Jun 1;306(11):G1021-32. doi: 10.1152/ajpgi.00452.2013. Epub 2014 Apr 17.

42.

Clustering of fungal community internal transcribed spacer sequence data obscures taxonomic diversity.

Yamamoto N, Bibby K.

Environ Microbiol. 2014 Aug;16(8):2491-500. doi: 10.1111/1462-2920.12390. Epub 2014 Mar 4.

PMID:
24428124
43.

Improved bacteriophage genome data is necessary for integrating viral and bacterial ecology.

Bibby K.

Microb Ecol. 2014 Feb;67(2):242-4. doi: 10.1007/s00248-013-0325-x. Epub 2013 Nov 20.

PMID:
24253663
44.

Suggested reporting parameters for investigations of wastewater from unconventional shale gas extraction.

Bibby KJ, Brantley SL, Reible DD, Linden KG, Mouser PJ, Gregory KB, Ellis BR, Vidic RD.

Environ Sci Technol. 2013;47(23):13220-1. doi: 10.1021/es404960z. Epub 2013 Nov 19. No abstract available.

PMID:
24252069
45.

Identification accuracy and diversity reproducibility associated with internal transcribed spacer-based fungal taxonomic library preparation.

Yamamoto N, Dannemiller KC, Bibby K, Peccia J.

Environ Microbiol. 2014 Sep;16(9):2764-76. doi: 10.1111/1462-2920.12338. Epub 2013 Dec 10.

PMID:
24237760
46.

Microbial community changes in hydraulic fracturing fluids and produced water from shale gas extraction.

Murali Mohan A, Hartsock A, Bibby KJ, Hammack RW, Vidic RD, Gregory KB.

Environ Sci Technol. 2013 Nov 19;47(22):13141-50. doi: 10.1021/es402928b. Epub 2013 Oct 31.

PMID:
24088205
47.

Fungal high-throughput taxonomic identification tool for use with next-generation sequencing (FHiTINGS).

Dannemiller KC, Reeves D, Bibby K, Yamamoto N, Peccia J.

J Basic Microbiol. 2014 Apr;54(4):315-21. doi: 10.1002/jobm.201200507. Epub 2013 Jun 14.

PMID:
23765392
48.

Prevalence of respiratory adenovirus species B and C in sewage sludge.

Bibby K, Peccia J.

Environ Sci Process Impacts. 2013 Feb;15(2):336-8. doi: 10.1039/c2em30831b. Epub 2012 Nov 28.

49.

Metagenomic identification of viral pathogens.

Bibby K.

Trends Biotechnol. 2013 May;31(5):275-9. doi: 10.1016/j.tibtech.2013.01.016. Epub 2013 Feb 14.

PMID:
23415279
50.

Identification of viral pathogen diversity in sewage sludge by metagenome analysis.

Bibby K, Peccia J.

Environ Sci Technol. 2013 Feb 19;47(4):1945-51. doi: 10.1021/es305181x. Epub 2013 Feb 8.

Supplemental Content

Support Center