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Items: 25

1.

Fine-tuned adaptation of embryo-endometrium pairs at implantation revealed by transcriptome analyses in Bos taurus.

Biase FH, Hue I, Dickinson SE, Jaffrezic F, Laloe D, Lewin HA, Sandra O.

PLoS Biol. 2019 Apr 12;17(4):e3000046. doi: 10.1371/journal.pbio.3000046. eCollection 2019 Apr.

2.

Evaluation of age, weaning weight, body condition score, and reproductive tract score in pre-selected beef heifers relative to reproductive potential.

Dickinson SE, Elmore MF, Kriese-Anderson L, Elmore JB, Walker BN, Dyce PW, Rodning SP, Biase FH.

J Anim Sci Biotechnol. 2019 Feb 26;10:18. doi: 10.1186/s40104-019-0329-6. eCollection 2019.

3.

Rainbow-Seq: Combining Cell Lineage Tracing with Single-Cell RNA Sequencing in Preimplantation Embryos.

Biase FH, Wu Q, Calandrelli R, Rivas-Astroza M, Zhou S, Chen Z, Zhong S.

iScience. 2018 Sep 28;7:16-29. doi: 10.1016/j.isci.2018.08.009. Epub 2018 Aug 16.

4.

Plasma metabolomic profiles differ at the time of artificial insemination based on pregnancy outcome, in Bos taurus beef heifers.

Phillips KM, Read CC, Kriese-Anderson LA, Rodning SP, Brandebourg TD, Biase FH, Marks ML, Elmore JB, Stanford MK, Dyce PW.

Sci Rep. 2018 Sep 4;8(1):13196. doi: 10.1038/s41598-018-31605-0.

5.

Transcriptome data of peripheral white blood cells from beef heifers collected at the time of artificial insemination.

Dickinson SE, Biase FH.

Data Brief. 2018 Mar 21;18:706-709. doi: 10.1016/j.dib.2018.03.062. eCollection 2018 Jun.

6.

Functional signaling and gene regulatory networks between the oocyte and the surrounding cumulus cells.

Biase FH, Kimble KM.

BMC Genomics. 2018 May 10;19(1):351. doi: 10.1186/s12864-018-4738-2.

7.

Extraction of total RNA from single-oocytes and single-cell mRNA sequencing of swine oocytes.

Kimble KM, Dickinson SE, Biase FH.

BMC Res Notes. 2018 Feb 27;11(1):155. doi: 10.1186/s13104-018-3264-2.

8.

Transcriptome profiles in peripheral white blood cells at the time of artificial insemination discriminate beef heifers with different fertility potential.

Dickinson SE, Griffin BA, Elmore MF, Kriese-Anderson L, Elmore JB, Dyce PW, Rodning SP, Biase FH.

BMC Genomics. 2018 Feb 9;19(1):129. doi: 10.1186/s12864-018-4505-4.

9.
10.

Genotypic and allelic frequencies of gene polymorphisms associated with meat tenderness in Nellore beef cattle.

Carvalho ME, Eler JP, Bonin MN, Rezende FM, Biase FH, Meirelles FV, Regitano LC, Coutinho LL, Balieiro JC, Ferraz JB.

Genet Mol Res. 2017 Feb 16;16(1). doi: 10.4238/gmr16018957.

PMID:
28218779
11.

Massive dysregulation of genes involved in cell signaling and placental development in cloned cattle conceptus and maternal endometrium.

Biase FH, Rabel C, Guillomot M, Hue I, Andropolis K, Olmstead CA, Oliveira R, Wallace R, Le Bourhis D, Richard C, Campion E, Chaulot-Talmon A, Giraud-Delville C, Taghouti G, Jammes H, Renard JP, Sandra O, Lewin HA.

Proc Natl Acad Sci U S A. 2016 Dec 20;113(51):14492-14501. doi: 10.1073/pnas.1520945114. Epub 2016 Dec 8.

12.

Mapping RNA-RNA interactome and RNA structure in vivo by MARIO.

Nguyen TC, Cao X, Yu P, Xiao S, Lu J, Biase FH, Sridhar B, Huang N, Zhang K, Zhong S.

Nat Commun. 2016 Jun 24;7:12023. doi: 10.1038/ncomms12023.

13.

In vitro maturation alters gene expression in bovine oocytes.

Adona PR, Leal CL, Biase FH, De Bem TH, Mesquita LG, Meirelles FV, Ferraz AL, Furlan LR, Monzani PS, Guemra S.

Zygote. 2016 Aug;24(4):624-33. doi: 10.1017/S0967199415000672. Epub 2016 Feb 17.

PMID:
26885679
14.

Time-variant clustering model for understanding cell fate decisions.

Huang W, Cao X, Biase FH, Yu P, Zhong S.

Proc Natl Acad Sci U S A. 2014 Nov 4;111(44):E4797-806. doi: 10.1073/pnas.1407388111. Epub 2014 Oct 22.

15.

Cell fate inclination within 2-cell and 4-cell mouse embryos revealed by single-cell RNA sequencing.

Biase FH, Cao X, Zhong S.

Genome Res. 2014 Nov;24(11):1787-96. doi: 10.1101/gr.177725.114. Epub 2014 Aug 5.

16.

Spatial and temporal changes of decorin, type I collagen and fibronectin expression in normal and clone bovine placenta.

Guillomot M, Campion E, Prézelin A, Sandra O, Hue I, Le Bourhis D, Richard C, Biase FH, Rabel C, Wallace R, Lewin H, Renard JP, Jammes H.

Placenta. 2014 Sep;35(9):737-47. doi: 10.1016/j.placenta.2014.06.366. Epub 2014 Jun 26.

PMID:
25012297
17.

Changes in WNT signaling-related gene expression associated with development and cloning in bovine extra-embryonic and endometrial tissues during the peri-implantation period.

Biase FH, Rabel C, Guillomot M, Sandra O, Andropolis K, Olmstead C, Oliveira R, Wallace R, Le Bourhis D, Richard C, Campion E, Chaulot-Talmon A, Giraud-Delville C, Taghouti G, Jammes H, Hue I, Renard JP, Lewin HA.

Mol Reprod Dev. 2013 Dec;80(12):977-87. doi: 10.1002/mrd.22257. Epub 2013 Oct 17.

PMID:
24038527
18.

Messenger RNAs in metaphase II oocytes correlate with successful embryo development to the blastocyst stage.

Biase FH, Everts RE, Oliveira R, Santos-Biase WK, Fonseca Merighe GK, Smith LC, Martelli L, Lewin H, Meirelles FV.

Zygote. 2014 Feb;22(1):69-79. doi: 10.1017/S0967199412000299. Epub 2012 Oct 10.

PMID:
23046986
19.

Single nucleotide polymorphisms in the bovine genome are associated with the number of oocytes collected during ovum pick up.

Santos-Biase WK, Biase FH, Buratini J Jr, Balieiro J, Watanabe YF, Accorsi MF, Ferreira CR, Stranieri P, Caetano AR, Meirelles FV.

Anim Reprod Sci. 2012 Oct;134(3-4):141-9. doi: 10.1016/j.anireprosci.2012.08.017. Epub 2012 Aug 14.

PMID:
22959639
20.

Messenger RNA expression of Pabpnl1 and Mbd3l2 genes in oocytes and cleavage embryos.

Biase FH, Martelli L, Puga R, Giuliatti S, Santos-Biase WK, Fonseca Merighe GK, Meirelles FV.

Fertil Steril. 2010 May 15;93(8):2507-12. doi: 10.1016/j.fertnstert.2009.08.051. Epub 2009 Oct 12.

PMID:
19819433
21.

Gene silencing during development of in vitro-produced female bovine embryos.

Merighe GK, Biase FH, Santos-Biase WK, Miranda MS, de Bem TH, Watanabe YF, Meirelles FV.

Genet Mol Res. 2009 Sep 15;8(3):1116-1127.

22.

A retrospective model of oocyte competence: global mRNA and housekeeping transcripts are not associated with in vitro developmental outcome.

Biase FH, Martelli L, Merighe GK, Santos Biase WK, Miranda M, Smith LC, Meirelles FV.

Zygote. 2009 Nov;17(4):289-95. doi: 10.1017/S0967199409005395. Epub 2009 Apr 27.

PMID:
19393120
23.

The genome sequence of taurine cattle: a window to ruminant biology and evolution.

Bovine Genome Sequencing and Analysis Consortium, Elsik CG, Tellam RL, Worley KC, Gibbs RA, Muzny DM, Weinstock GM, Adelson DL, Eichler EE, Elnitski L, Guigó R, Hamernik DL, Kappes SM, Lewin HA, Lynn DJ, Nicholas FW, Reymond A, Rijnkels M, Skow LC, Zdobnov EM, Schook L, Womack J, Alioto T, Antonarakis SE, Astashyn A, Chapple CE, Chen HC, Chrast J, Câmara F, Ermolaeva O, Henrichsen CN, Hlavina W, Kapustin Y, Kiryutin B, Kitts P, Kokocinski F, Landrum M, Maglott D, Pruitt K, Sapojnikov V, Searle SM, Solovyev V, Souvorov A, Ucla C, Wyss C, Anzola JM, Gerlach D, Elhaik E, Graur D, Reese JT, Edgar RC, McEwan JC, Payne GM, Raison JM, Junier T, Kriventseva EV, Eyras E, Plass M, Donthu R, Larkin DM, Reecy J, Yang MQ, Chen L, Cheng Z, Chitko-McKown CG, Liu GE, Matukumalli LK, Song J, Zhu B, Bradley DG, Brinkman FS, Lau LP, Whiteside MD, Walker A, Wheeler TT, Casey T, German JB, Lemay DG, Maqbool NJ, Molenaar AJ, Seo S, Stothard P, Baldwin CL, Baxter R, Brinkmeyer-Langford CL, Brown WC, Childers CP, Connelley T, Ellis SA, Fritz K, Glass EJ, Herzig CT, Iivanainen A, Lahmers KK, Bennett AK, Dickens CM, Gilbert JG, Hagen DE, Salih H, Aerts J, Caetano AR, Dalrymple B, Garcia JF, Gill CA, Hiendleder SG, Memili E, Spurlock D, Williams JL, Alexander L, Brownstein MJ, Guan L, Holt RA, Jones SJ, Marra MA, Moore R, Moore SS, Roberts A, Taniguchi M, Waterman RC, Chacko J, Chandrabose MM, Cree A, Dao MD, Dinh HH, Gabisi RA, Hines S, Hume J, Jhangiani SN, Joshi V, Kovar CL, Lewis LR, Liu YS, Lopez J, Morgan MB, Nguyen NB, Okwuonu GO, Ruiz SJ, Santibanez J, Wright RA, Buhay C, Ding Y, Dugan-Rocha S, Herdandez J, Holder M, Sabo A, Egan A, Goodell J, Wilczek-Boney K, Fowler GR, Hitchens ME, Lozado RJ, Moen C, Steffen D, Warren JT, Zhang J, Chiu R, Schein JE, Durbin KJ, Havlak P, Jiang H, Liu Y, Qin X, Ren Y, Shen Y, Song H, Bell SN, Davis C, Johnson AJ, Lee S, Nazareth LV, Patel BM, Pu LL, Vattathil S, Williams RL Jr, Curry S, Hamilton C, Sodergren E, Wheeler DA, Barris W, Bennett GL, Eggen A, Green RD, Harhay GP, Hobbs M, Jann O, Keele JW, Kent MP, Lien S, McKay SD, McWilliam S, Ratnakumar A, Schnabel RD, Smith T, Snelling WM, Sonstegard TS, Stone RT, Sugimoto Y, Takasuga A, Taylor JF, Van Tassell CP, Macneil MD, Abatepaulo AR, Abbey CA, Ahola V, Almeida IG, Amadio AF, Anatriello E, Bahadue SM, Biase FH, Boldt CR, Carroll JA, Carvalho WA, Cervelatti EP, Chacko E, Chapin JE, Cheng Y, Choi J, Colley AJ, de Campos TA, De Donato M, Santos IK, de Oliveira CJ, Deobald H, Devinoy E, Donohue KE, Dovc P, Eberlein A, Fitzsimmons CJ, Franzin AM, Garcia GR, Genini S, Gladney CJ, Grant JR, Greaser ML, Green JA, Hadsell DL, Hakimov HA, Halgren R, Harrow JL, Hart EA, Hastings N, Hernandez M, Hu ZL, Ingham A, Iso-Touru T, Jamis C, Jensen K, Kapetis D, Kerr T, Khalil SS, Khatib H, Kolbehdari D, Kumar CG, Kumar D, Leach R, Lee JC, Li C, Logan KM, Malinverni R, Marques E, Martin WF, Martins NF, Maruyama SR, Mazza R, McLean KL, Medrano JF, Moreno BT, Moré DD, Muntean CT, Nandakumar HP, Nogueira MF, Olsaker I, Pant SD, Panzitta F, Pastor RC, Poli MA, Poslusny N, Rachagani S, Ranganathan S, Razpet A, Riggs PK, Rincon G, Rodriguez-Osorio N, Rodriguez-Zas SL, Romero NE, Rosenwald A, Sando L, Schmutz SM, Shen L, Sherman L, Southey BR, Lutzow YS, Sweedler JV, Tammen I, Telugu BP, Urbanski JM, Utsunomiya YT, Verschoor CP, Waardenberg AJ, Wang Z, Ward R, Weikard R, Welsh TH Jr, White SN, Wilming LG, Wunderlich KR, Yang J, Zhao FQ.

Science. 2009 Apr 24;324(5926):522-8. doi: 10.1126/science.1169588.

24.

Global poly(A) mRNA expression profile measured in individual bovine oocytes and cleavage embryos.

Biase FH, Fonseca Merighe GK, Santos Biase WK, Martelli L, Meirelles FV.

Zygote. 2008 Feb;16(1):29-38. doi: 10.1017/S0967199407004455.

PMID:
18221579
25.

The polymorphism in MUC1 gene in Nelore cattle.

de Souza FR, Dentillo DB, Meola J, Biase FH, Andréa MV, Vozzi PA, Lôbo RB, Martelli LR.

J Anim Breed Genet. 2007 Feb;124(1):42-6.

PMID:
17302961

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