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Items: 47


Association between meteorological variations and activities of influenza A and B across different climate zones: a multi-region modelling analysis across the globe.

Chong KC, Lee TC, Bialasiewicz S, Chen J, Smith DW, Choy WSC, Krajden M, Jalal H, Jennings L, Alexander B, Lee HK, Fraaij P, Levy A, Yeung ACM, Tozer S, Lau SYF, Jia KM, Tang JWT, Hui DSC, Chan PKS.

J Infect. 2019 Sep 30. pii: S0163-4453(19)30284-1. doi: 10.1016/j.jinf.2019.09.013. [Epub ahead of print]


Parechovirus A infections in healthy Australian children during the first 2-years of life: a community-based longitudinal birth cohort study.

Wang CYT, Ware RS, Lambert SB, Mhango LP, Tozer S, Day R, Grimwood K, Bialasiewicz S.

Clin Infect Dis. 2019 Aug 13. pii: ciz761. doi: 10.1093/cid/ciz761. [Epub ahead of print]


Rapid diagnosis of Capnocytophaga canimorsus septic shock in an immunocompetent individual using real-time Nanopore sequencing: a case report.

Bialasiewicz S, Duarte TPS, Nguyen SH, Sukumaran V, Stewart A, Appleton S, Pitt ME, Bainomugisa A, Jennison AV, Graham R, Coin LJM, Hajkowicz K.

BMC Infect Dis. 2019 Jul 24;19(1):660. doi: 10.1186/s12879-019-4173-2.


Comparative global epidemiology of influenza, respiratory syncytial and parainfluenza viruses, 2010-2015.

Lam TT, Tang JW, Lai FY, Zaraket H, Dbaibo G, Bialasiewicz S, Tozer S, Heraud JM, Drews SJ, Hachette T, Chan PK, Koay ES, Lee HK, Tee KK, Liu Y, Fraaij P, Jennings L, Waris M, Krajden M, Corriveau A, Jalal H, Nishimura H, Nymadawa P, Badarch D, Watanabe A, Kabanda A, Sloots T, Kok J, Dwyer DE, Koopmans M; INSPIRE (International Network for the Sequencing of Respiratory Viruses).

J Infect. 2019 Oct;79(4):373-382. doi: 10.1016/j.jinf.2019.07.008. Epub 2019 Jul 16.


The presence of virus significantly associates with chronic rhinosinusitis disease severity.

Goggin RK, Bennett CA, Bialasiewicz S, Vediappan RS, Vreugde S, Wormald PJ, Psaltis AJ.

Allergy. 2019 Aug;74(8):1569-1572. doi: 10.1111/all.13772. Epub 2019 Apr 2. No abstract available.


Paediatric intensive care admissions during the 2015-2016 Queensland human parechovirus outbreak.

McKenna R, Joseph L, Sargent P, May M, Tozer S, Bialasiewicz S, Heney C, Schlapbach LJ, Clark JE.

J Paediatr Child Health. 2019 Aug;55(8):968-974. doi: 10.1111/jpc.14336. Epub 2019 Jan 24.


Nasal swab bacteriology by PCR during the first 24-months of life: A prospective birth cohort study.

Palmu AA, Ware RS, Lambert SB, Sarna M, Bialasiewicz S, Seib KL, Atack JM, Nissen MD, Grimwood K.

Pediatr Pulmonol. 2019 Mar;54(3):289-296. doi: 10.1002/ppul.24231. Epub 2019 Jan 4.


The unsolved problem of otitis media in indigenous populations: a systematic review of upper respiratory and middle ear microbiology in indigenous children with otitis media.

Coleman A, Wood A, Bialasiewicz S, Ware RS, Marsh RL, Cervin A.

Microbiome. 2018 Nov 5;6(1):199. doi: 10.1186/s40168-018-0577-2.


Comparative Viral Sampling in the Sinonasal Passages; Different Viruses at Different Sites.

Goggin RK, Bennett CA, Bassiouni A, Bialasiewicz S, Vreugde S, Wormald PJ, Psaltis AJ.

Front Cell Infect Microbiol. 2018 Sep 19;8:334. doi: 10.3389/fcimb.2018.00334. eCollection 2018.


Human Parechovirus 3 in Infants: Expanding Our Knowledge of Adverse Outcomes.

Joseph L, May M, Thomas M, Smerdon C, Tozer S, Bialasiewicz S, McKenna R, Sargent P, Kynaston A, Heney C, Clark JE.

Pediatr Infect Dis J. 2019 Jan;38(1):1-5. doi: 10.1097/INF.0000000000002136.


Assessing Plasmodium falciparum transmission in mosquito-feeding assays using quantitative PCR.

Wang CYT, McCarthy JS, Stone WJ, Bousema T, Collins KA, Bialasiewicz S.

Malar J. 2018 Jul 5;17(1):249. doi: 10.1186/s12936-018-2382-6.


Viruses causing lower respiratory symptoms in young children: findings from the ORChID birth cohort.

Sarna M, Lambert SB, Sloots TP, Whiley DM, Alsaleh A, Mhango L, Bialasiewicz S, Wang D, Nissen MD, Grimwood K, Ware RS.

Thorax. 2018 Oct;73(10):969-979. doi: 10.1136/thoraxjnl-2017-210233. Epub 2017 Dec 15.


Potential Route of Transmission for Trichodysplasia Spinulosa Polyomavirus.

Bialasiewicz S, Byrom L, Fraser C, Clark J.

J Infect Dis. 2017 Apr 1;215(7):1175-1176. doi: 10.1093/infdis/jix078. No abstract available.


A Difficult Decision: Atypical JC Polyomavirus Encephalopathy in a Kidney Transplant Recipient.

Bialasiewicz S, Hart G, Oliver K, Agnihotri SP, Koralnik IJ, Viscidi R, Nissen MD, Sloots TP, Burke MT, Isbel NM, Burke J.

Transplantation. 2017 Jun;101(6):1461-1467. doi: 10.1097/TP.0000000000001275.


Detection of Recently Discovered Human Polyomaviruses in a Longitudinal Kidney Transplant Cohort.

Bialasiewicz S, Rockett RJ, Barraclough KA, Leary D, Dudley KJ, Isbel NM, Sloots TP.

Am J Transplant. 2016 Sep;16(9):2734-40. doi: 10.1111/ajt.13799. Epub 2016 Apr 19.


Specific rolling circle amplification of low-copy human polyomaviruses BKV, HPyV6, HPyV7, TSPyV, and STLPyV.

Rockett R, Barraclough KA, Isbel NM, Dudley KJ, Nissen MD, Sloots TP, Bialasiewicz S.

J Virol Methods. 2015 Apr;215-216:17-21. doi: 10.1016/j.jviromet.2015.02.004. Epub 2015 Feb 16.


Acquisition of human polyomaviruses in the first 18 months of life.

Rockett RJ, Bialasiewicz S, Mhango L, Gaydon J, Holding R, Whiley DM, Lambert SB, Ware RS, Nissen MD, Grimwood K, Sloots TP.

Emerg Infect Dis. 2015 Feb;21(2):365-7. doi: 10.3201/eid2102.141429.


Detection of a divergent Parainfluenza 4 virus in an adult patient with influenza like illness using next-generation sequencing.

Bialasiewicz S, McVernon J, Nolan T, Lambert SB, Zhao G, Wang D, Nissen MD, Sloots TP.

BMC Infect Dis. 2014 May 19;14:275. doi: 10.1186/1471-2334-14-275.


Nasal swab samples and real-time polymerase chain reaction assays in community-based, longitudinal studies of respiratory viruses: the importance of sample integrity and quality control.

Alsaleh AN, Whiley DM, Bialasiewicz S, Lambert SB, Ware RS, Nissen MD, Sloots TP, Grimwood K.

BMC Infect Dis. 2014 Jan 9;14:15. doi: 10.1186/1471-2334-14-15.


Different serologic behavior of MCPyV, TSPyV, HPyV6, HPyV7 and HPyV9 polyomaviruses found on the skin.

van der Meijden E, Bialasiewicz S, Rockett RJ, Tozer SJ, Sloots TP, Feltkamp MC.

PLoS One. 2013 Nov 21;8(11):e81078. doi: 10.1371/journal.pone.0081078. eCollection 2013.


Screening for H7N9 influenza A by matrix gene-based real-time reverse-transcription PCR.

Hackett H, Bialasiewicz S, Jacob K, Bletchly C, Harrower B, Nimmo GR, Nissen MD, Sloots TP, Whiley DM.

J Virol Methods. 2014 Jan;195:123-5. doi: 10.1016/j.jviromet.2013.10.016. Epub 2013 Oct 14.


Detection of novel polyomaviruses, TSPyV, HPyV6, HPyV7, HPyV9 and MWPyV in feces, urine, blood, respiratory swabs and cerebrospinal fluid.

Rockett RJ, Sloots TP, Bowes S, O'Neill N, Ye S, Robson J, Whiley DM, Lambert SB, Wang D, Nissen MD, Bialasiewicz S.

PLoS One. 2013 May 8;8(5):e62764. doi: 10.1371/journal.pone.0062764. Print 2013.


Association of micropapillary urothelial carcinoma of the bladder and BK viruria in kidney transplant recipients.

Bialasiewicz S, Cho Y, Rockett R, Preston J, Wood S, Fleming S, Shepherd B, Barraclough K, Sloots TP, Isbel N.

Transpl Infect Dis. 2013 Jun;15(3):283-9. doi: 10.1111/tid.12072. Epub 2013 Apr 1.


Observational Research in Childhood Infectious Diseases (ORChID): a dynamic birth cohort study.

Lambert SB, Ware RS, Cook AL, Maguire FA, Whiley DM, Bialasiewicz S, Mackay IM, Wang D, Sloots TP, Nissen MD, Grimwood K.

BMJ Open. 2012 Oct 31;2(6). pii: e002134. doi: 10.1136/bmjopen-2012-002134. Print 2012.


NR1I2 polymorphisms are related to tacrolimus dose-adjusted exposure and BK viremia in adult kidney transplantation.

Barraclough KA, Isbel NM, Lee KJ, Bergmann TK, Johnson DW, McWhinney BC, Ungerer JP, Campbell SB, Leary DR, Bialasiewicz S, Rockett RJ, Staatz CE.

Transplantation. 2012 Nov 27;94(10):1025-32. doi: 10.1097/TP.0b013e31826c3985.


Exploring the prevalence of ten polyomaviruses and two herpes viruses in breast cancer.

Antonsson A, Bialasiewicz S, Rockett RJ, Jacob K, Bennett IC, Sloots TP.

PLoS One. 2012;7(8):e39842. doi: 10.1371/journal.pone.0039842. Epub 2012 Aug 15.


Protocol for the use of enzyme-linked hybridization assays for genital ulcer disease.

Bialasiewicz S, Mackay IM, Whiley DM, Sloots TP.

Methods Mol Biol. 2012;903:225-33. doi: 10.1007/978-1-61779-937-2_14.


Infrequent detection of KI, WU and MC polyomaviruses in immunosuppressed individuals with or without progressive multifocal leukoencephalopathy.

Dang X, Bialasiewicz S, Nissen MD, Sloots TP, Koralnik IJ, Tan CS.

PLoS One. 2011 Mar 16;6(3):e16736. doi: 10.1371/journal.pone.0016736.


A real-time, quantitative PCR method using hydrolysis probes for the monitoring of Plasmodium falciparum load in experimentally infected human volunteers.

Rockett RJ, Tozer SJ, Peatey C, Bialasiewicz S, Whiley DM, Nissen MD, Trenholme K, Mc Carthy JS, Sloots TP.

Malar J. 2011 Feb 28;10:48. doi: 10.1186/1475-2875-10-48.


A simple approach for preparing real-time PCR positive reaction controls for rare or emerging viruses.

Whiley DM, Faux CE, Bialasiewicz S, Gould AR, Lambert SB, Nissen MD, Sloots TP.

J Clin Virol. 2010 Jul;48(3):193-7. doi: 10.1016/j.jcv.2010.03.022. Epub 2010 Apr 22.


Whole-genome characterization and genotyping of global WU polyomavirus strains.

Bialasiewicz S, Rockett R, Whiley DW, Abed Y, Allander T, Binks M, Boivin G, Cheng AC, Chung JY, Ferguson PE, Gilroy NM, Leach AJ, Lindau C, Rossen JW, Sorrell TC, Nissen MD, Sloots TP.

J Virol. 2010 Jun;84(12):6229-34. doi: 10.1128/JVI.02658-09. Epub 2010 Mar 31.


Low prevalence of DNA viruses in the human endometrium and endometriosis.

Vestergaard AL, Knudsen UB, Munk T, Rosbach H, Bialasiewicz S, Sloots TP, Martensen PM, Antonsson A.

Arch Virol. 2010 May;155(5):695-703. doi: 10.1007/s00705-010-0643-y. Epub 2010 Mar 19.


A Novel Duplex Real-Time Reverse-Transcription PCR Assay for the Detection of Influenza A and the Novel Influenza A(H1N1) Strain.

Rockett RJ, Bialasiewicz S, Whiley DM, Bletchly C, Faux CE, Lambert SB, Nimmo GR, Nissen MD, Sloots TP.

Viruses. 2009 Dec;1(3):1204-8. doi: 10.3390/v1031204. Epub 2009 Dec 9.


Detection of novel influenza A(H1N1) virus by real-time RT-PCR.

Whiley DM, Bialasiewicz S, Bletchly C, Faux CE, Harrower B, Gould AR, Lambert SB, Nimmo GR, Nissen MD, Sloots TP.

J Clin Virol. 2009 Jul;45(3):203-4. doi: 10.1016/j.jcv.2009.05.032. Epub 2009 Jun 6.


Detection of BK, JC, WU, or KI polyomaviruses in faecal, urine, blood, cerebrospinal fluid and respiratory samples.

Bialasiewicz S, Whiley DM, Lambert SB, Nissen MD, Sloots TP.

J Clin Virol. 2009 Jul;45(3):249-54. doi: 10.1016/j.jcv.2009.05.002. Epub 2009 Jun 9.


The check is in the mail: piloting a novel approach to Chlamydia trachomatis testing using self-collected, mailed specimen.

Buhrer-Skinner M, Muller R, Bialasiewicz S, Sloots TP, Debattista J, Gordon R, Buettner PG.

Sex Health. 2009 Jun;6(2):163-9. doi: 10.1071/SH08076.


Merkel cell polyomavirus DNA in respiratory specimens from children and adults.

Bialasiewicz S, Lambert SB, Whiley DM, Nissen MD, Sloots TP.

Emerg Infect Dis. 2009 Mar;15(3):492-4. doi: 10.3201/eid1503.081067.


Detection of human bocavirus in respiratory, fecal, and blood samples by real-time PCR.

Tozer SJ, Lambert SB, Whiley DM, Bialasiewicz S, Lyon MJ, Nissen MD, Sloots TP.

J Med Virol. 2009 Mar;81(3):488-93. doi: 10.1002/jmv.21409.


A novel gel-based method for self-collection and ambient temperature postal transport of urine for PCR detection of Chlamydia trachomatis.

Bialasiewicz S, Whiley DM, Buhrer-Skinner M, Bautista C, Barker K, Aitken S, Gordon R, Muller R, Lambert SB, Debattista J, Nissen MD, Sloots TP.

Sex Transm Infect. 2009 Apr;85(2):102-5. doi: 10.1136/sti.2008.032607. Epub 2008 Nov 12.


False-negative results in nucleic acid amplification tests-do we need to routinely use two genetic targets in all assays to overcome problems caused by sequence variation?

Whiley DM, Lambert SB, Bialasiewicz S, Goire N, Nissen MD, Sloots TP.

Crit Rev Microbiol. 2008;34(2):71-6. doi: 10.1080/10408410801960913 . Review.


Presence of the newly discovered human polyomaviruses KI and WU in Australian patients with acute respiratory tract infection.

Bialasiewicz S, Whiley DM, Lambert SB, Jacob K, Bletchly C, Wang D, Nissen MD, Sloots TP.

J Clin Virol. 2008 Feb;41(2):63-8.


Development and evaluation of real-time PCR assays for the detection of the newly identified KI and WU polyomaviruses.

Bialasiewicz S, Whiley DM, Lambert SB, Gould A, Nissen MD, Sloots TP.

J Clin Virol. 2007 Sep;40(1):9-14. Epub 2007 Aug 21.


A newly reported human polyomavirus, KI virus, is present in the respiratory tract of Australian children.

Bialasiewicz S, Whiley DM, Lambert SB, Wang D, Nissen MD, Sloots TP.

J Clin Virol. 2007 Sep;40(1):15-8. Epub 2007 Aug 13.


Impact of competitive inhibition and sequence variation upon the sensitivity of malaria PCR.

Bialasiewicz S, Whiley DM, Nissen MD, Sloots TP.

J Clin Microbiol. 2007 May;45(5):1621-3. Epub 2007 Feb 28.


Human metapneumovirus, Australia, 2001-2004.

Sloots TP, Mackay IM, Bialasiewicz S, Jacob KC, McQueen E, Harnett GB, Siebert DJ, Masters BI, Young PR, Nissen MD.

Emerg Infect Dis. 2006 Aug;12(8):1263-6.


Genetic diversity of human metapneumovirus over 4 consecutive years in Australia.

Mackay IM, Bialasiewicz S, Jacob KC, McQueen E, Arden KE, Nissen MD, Sloots TP.

J Infect Dis. 2006 Jun 15;193(12):1630-3. Epub 2006 May 11.


Use of the P gene to genotype human metapneumovirus identifies 4 viral subtypes.

Mackay IM, Bialasiewicz S, Waliuzzaman Z, Chidlow GR, Fegredo DC, Laingam S, Adamson P, Harnett GB, Rawlinson W, Nissen MD, Sloots TP.

J Infect Dis. 2004 Dec 1;190(11):1913-8. Epub 2004 Nov 3. Erratum in: J Infect Dis. 2006 Jan 1;193(1):168.


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