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Building an Inducible T7 RNA Polymerase/T7 Promoter Circuit in Synechocystis sp. PCC6803.

Jin H, Lindblad P, Bhaya D.

ACS Synth Biol. 2019 Apr 19;8(4):655-660. doi: 10.1021/acssynbio.8b00515. Epub 2019 Apr 3.


Probing the ecological and evolutionary history of a thermophilic cyanobacterial population via statistical properties of its microdiversity.

Rosen MJ, Davison M, Fisher DS, Bhaya D.

PLoS One. 2018 Nov 14;13(11):e0205396. doi: 10.1371/journal.pone.0205396. eCollection 2018.


Construction of a Shuttle Vector Using an Endogenous Plasmid From the Cyanobacterium Synechocystis sp. PCC6803.

Jin H, Wang Y, Idoine A, Bhaya D.

Front Microbiol. 2018 Jul 24;9:1662. doi: 10.3389/fmicb.2018.01662. eCollection 2018.


On the Origin of Reverse Transcriptase-Using CRISPR-Cas Systems and Their Hyperdiverse, Enigmatic Spacer Repertoires.

Silas S, Makarova KS, Shmakov S, Páez-Espino D, Mohr G, Liu Y, Davison M, Roux S, Krishnamurthy SR, Fu BXH, Hansen LL, Wang D, Sullivan MB, Millard A, Clokie MR, Bhaya D, Lambowitz AM, Kyrpides NC, Koonin EV, Fire AZ.

MBio. 2017 Jul 11;8(4). pii: e00897-17. doi: 10.1128/mBio.00897-17.


Emergent Phototactic Responses of Cyanobacteria under Complex Light Regimes.

Chau RM, Bhaya D, Huang KC.

MBio. 2017 Mar 7;8(2). pii: e02330-16. doi: 10.1128/mBio.02330-16.


Long-term microfluidic tracking of coccoid cyanobacterial cells reveals robust control of division timing.

Yu FB, Willis L, Chau RM, Zambon A, Horowitz M, Bhaya D, Huang KC, Quake SR.

BMC Biol. 2017 Feb 14;15(1):11. doi: 10.1186/s12915-016-0344-4.


Diversity in a Polymicrobial Community Revealed by Analysis of Viromes, Endolysins and CRISPR Spacers.

Davison M, Treangen TJ, Koren S, Pop M, Bhaya D.

PLoS One. 2016 Sep 9;11(9):e0160574. doi: 10.1371/journal.pone.0160574. eCollection 2016.


In the Limelight: Photoreceptors in Cyanobacteria.

Bhaya D.

MBio. 2016 Jun 28;7(3). pii: e00741-16. doi: 10.1128/mBio.00741-16.


Direct CRISPR spacer acquisition from RNA by a natural reverse transcriptase-Cas1 fusion protein.

Silas S, Mohr G, Sidote DJ, Markham LM, Sanchez-Amat A, Bhaya D, Lambowitz AM, Fire AZ.

Science. 2016 Feb 26;351(6276):aad4234. doi: 10.1126/science.aad4234.


Emerging technologies illuminate facets of photosynthesis in cyanobacteria.

Bhaya D, Lindblad P.

Photosynth Res. 2015 Oct;126(1):1-2. doi: 10.1007/s11120-015-0189-7. No abstract available.


Gordon research conference on the dynamics and regulation of photosynthesis: from the origin of bio-catalysis to innovative solar conversion.

Govindjee, Grossman AR, Bhaya D.

Photosynth Res. 2016 Mar;127(3):379-89. doi: 10.1007/s11120-015-0187-9.


Microbial diversity. Fine-scale diversity and extensive recombination in a quasisexual bacterial population occupying a broad niche.

Rosen MJ, Davison M, Bhaya D, Fisher DS.

Science. 2015 May 29;348(6238):1019-23. doi: 10.1126/science.aaa4456.


Creation and Analysis of a Virome: Using CRISPR Spacers.

Davison M, Bhaya D.

Methods Mol Biol. 2015;1311:307-16. doi: 10.1007/978-1-4939-2687-9_20.


Maintenance of motility bias during cyanobacterial phototaxis.

Chau RMW, Ursell T, Wang S, Huang KC, Bhaya D.

Biophys J. 2015 Apr 7;108(7):1623-1632. doi: 10.1016/j.bpj.2015.01.042.


Challenges of metagenomics and single-cell genomics approaches for exploring cyanobacterial diversity.

Davison M, Hall E, Zare R, Bhaya D.

Photosynth Res. 2015 Oct;126(1):135-46. doi: 10.1007/s11120-014-0066-9. Epub 2014 Dec 17. Review.


Motility enhancement through surface modification is sufficient for cyanobacterial community organization during phototaxis.

Ursell T, Chau RM, Wisen S, Bhaya D, Huang KC.

PLoS Comput Biol. 2013;9(9):e1003205. doi: 10.1371/journal.pcbi.1003205. Epub 2013 Sep 5.


Role of polyphosphate in thermophilic Synechococcus sp. from microbial mats.

Gomez-Garcia MR, Fazeli F, Grote A, Grossman AR, Bhaya D.

J Bacteriol. 2013 Aug;195(15):3309-19. doi: 10.1128/JB.00207-13. Epub 2013 May 17.


Modeling local interactions during the motion of cyanobacteria.

Galante A, Wisen S, Bhaya D, Levy D.

J Theor Biol. 2012 Sep 21;309:147-58. doi: 10.1016/j.jtbi.2012.06.013. Epub 2012 Jun 17.


Novel miniature transposable elements in thermophilic Synechococcus strains and their impact on an environmental population.

Nelson WC, Bhaya D, Heidelberg JF.

J Bacteriol. 2012 Jul;194(14):3636-42. doi: 10.1128/JB.00333-12. Epub 2012 May 4.


CRISPR-Cas systems in bacteria and archaea: versatile small RNAs for adaptive defense and regulation.

Bhaya D, Davison M, Barrangou R.

Annu Rev Genet. 2011;45:273-97. doi: 10.1146/annurev-genet-110410-132430. Review.


Community ecology of hot spring cyanobacterial mats: predominant populations and their functional potential.

Klatt CG, Wood JM, Rusch DB, Bateson MM, Hamamura N, Heidelberg JF, Grossman AR, Bhaya D, Cohan FM, Kühl M, Bryant DA, Ward DM.

ISME J. 2011 Aug;5(8):1262-78. doi: 10.1038/ismej.2011.73. Epub 2011 Jun 23.


Analysis of insertion sequences in thermophilic cyanobacteria: exploring the mechanisms of establishing, maintaining, and withstanding high insertion sequence abundance.

Nelson WC, Wollerman L, Bhaya D, Heidelberg JF.

Appl Environ Microbiol. 2011 Aug;77(15):5458-66. doi: 10.1128/AEM.05090-11. Epub 2011 Jun 10.


Whole gene amplification and protein separation from a few cells.

Chueh BH, Li CW, Wu H, Davison M, Wei H, Bhaya D, Zare RN.

Anal Biochem. 2011 Apr 1;411(1):64-70. doi: 10.1016/j.ab.2010.12.028. Epub 2010 Dec 24.


In situ dynamics of O2, pH and cyanobacterial transcripts associated with CCM, photosynthesis and detoxification of ROS.

Jensen SI, Steunou AS, Bhaya D, Kühl M, Grossman AR.

ISME J. 2011 Feb;5(2):317-28. doi: 10.1038/ismej.2010.131. Epub 2010 Aug 26.


Alternative pathways for phosphonate metabolism in thermophilic cyanobacteria from microbial mats.

Gomez-Garcia MR, Davison M, Blain-Hartnung M, Grossman AR, Bhaya D.

ISME J. 2011 Jan;5(1):141-9. doi: 10.1038/ismej.2010.96. Epub 2010 Jul 15.


Germ warfare in a microbial mat community: CRISPRs provide insights into the co-evolution of host and viral genomes.

Heidelberg JF, Nelson WC, Schoenfeld T, Bhaya D.

PLoS One. 2009;4(1):e4169. doi: 10.1371/journal.pone.0004169. Epub 2009 Jan 9.


Phosphorus deprivation responses and phosphonate utilization in a thermophilic Synechococcus sp. from microbial mats.

Adams MM, Gómez-García MR, Grossman AR, Bhaya D.

J Bacteriol. 2008 Dec;190(24):8171-84. doi: 10.1128/JB.01011-08. Epub 2008 Oct 17.


Characterization of two thermostable cyanobacterial phytochromes reveals global movements in the chromophore-binding domain during photoconversion.

Ulijasz AT, Cornilescu G, von Stetten D, Kaminski S, Mroginski MA, Zhang J, Bhaya D, Hildebrandt P, Vierstra RD.

J Biol Chem. 2008 Jul 25;283(30):21251-66. doi: 10.1074/jbc.M801592200. Epub 2008 May 14.


Tracking phototactic responses and modeling motility of Synechocystis sp. strain PCC6803.

Burriesci M, Bhaya D.

J Photochem Photobiol B. 2008 May 29;91(2-3):77-86. doi: 10.1016/j.jphotobiol.2008.01.012. Epub 2008 Feb 13.


Regulation of nif gene expression and the energetics of N2 fixation over the diel cycle in a hot spring microbial mat.

Steunou AS, Jensen SI, Brecht E, Becraft ED, Bateson MM, Kilian O, Bhaya D, Ward DM, Peters JW, Grossman AR, Kühl M.

ISME J. 2008 Apr;2(4):364-78. doi: 10.1038/ismej.2007.117. Epub 2008 Mar 6.


A novel two domain-fusion protein in cyanobacteria with similarity to the CAB/ELIP/HLIP superfamily: evolutionary implications and regulation.

Kilian O, Steunou AS, Grossman AR, Bhaya D.

Mol Plant. 2008 Jan;1(1):155-66. doi: 10.1093/mp/ssm019. Epub 2007 Dec 3.


Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses.

Bhaya D, Grossman AR, Steunou AS, Khuri N, Cohan FM, Hamamura N, Melendrez MC, Bateson MM, Ward DM, Heidelberg JF.

ISME J. 2007 Dec;1(8):703-13. Epub 2007 Oct 25.


Genomics, environmental genomics and the issue of microbial species.

Ward DM, Cohan FM, Bhaya D, Heidelberg JF, Kühl M, Grossman A.

Heredity (Edinb). 2008 Feb;100(2):207-19. Epub 2007 Jun 6. Review.


Responses of a thermophilic Synechococcus isolate from the microbial mat of Octopus Spring to light.

Kilian O, Steunou AS, Fazeli F, Bailey S, Bhaya D, Grossman AR.

Appl Environ Microbiol. 2007 Jul;73(13):4268-78. Epub 2007 May 4.


Counting low-copy number proteins in a single cell.

Huang B, Wu H, Bhaya D, Grossman A, Granier S, Kobilka BK, Zare RN.

Science. 2007 Jan 5;315(5808):81-4.


In situ analysis of nitrogen fixation and metabolic switching in unicellular thermophilic cyanobacteria inhabiting hot spring microbial mats.

Steunou AS, Bhaya D, Bateson MM, Melendrez MC, Ward DM, Brecht E, Peters JW, Kühl M, Grossman AR.

Proc Natl Acad Sci U S A. 2006 Feb 14;103(7):2398-403. Epub 2006 Feb 7.


Multiple light inputs control phototaxis in Synechocystis sp. strain PCC6803.

Ng WO, Grossman AR, Bhaya D.

J Bacteriol. 2003 Mar;185(5):1599-607.


Analysis of the hli gene family in marine and freshwater cyanobacteria.

Bhaya D, Dufresne A, Vaulot D, Grossman A.

FEMS Microbiol Lett. 2002 Oct 8;215(2):209-19.


Novel motility mutants of synechocystis strain PCC 6803 generated by in vitro transposon mutagenesis.

Bhaya D, Takahashi A, Shahi P, Grossman AR.

J Bacteriol. 2001 Oct;183(20):6140-3.


Light regulation of type IV pilus-dependent motility by chemosensor-like elements in Synechocystis PCC6803.

Bhaya D, Takahashi A, Grossman AR.

Proc Natl Acad Sci U S A. 2001 Jun 19;98(13):7540-5. Epub 2001 Jun 12.


Tracking the light environment by cyanobacteria and the dynamic nature of light harvesting.

Grossman AR, Bhaya D, He Q.

J Biol Chem. 2001 Apr 13;276(15):11449-52. Epub 2001 Feb 16. Review. No abstract available.


Highly expressed and alien genes of the Synechocystis genome.

Mrázek J, Bhaya D, Grossman AR, Karlin S.

Nucleic Acids Res. 2001 Apr 1;29(7):1590-601.


Isolation of regulated genes of the cyanobacterium Synechocystis sp. strain PCC 6803 by differential display.

Bhaya D, Vaulot D, Amin P, Takahashi AW, Grossman AR.

J Bacteriol. 2000 Oct;182(20):5692-9.


Type IV pilus biogenesis and motility in the cyanobacterium Synechocystis sp. PCC6803.

Bhaya D, Bianco NR, Bryant D, Grossman A.

Mol Microbiol. 2000 Aug;37(4):941-51.


The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant.

Huala E, Dickerman AW, Garcia-Hernandez M, Weems D, Reiser L, LaFond F, Hanley D, Kiphart D, Zhuang M, Huang W, Mueller LA, Bhattacharyya D, Bhaya D, Sobral BW, Beavis W, Meinke DW, Town CD, Somerville C, Rhee SY.

Nucleic Acids Res. 2001 Jan 1;29(1):102-5.


The role of an alternative sigma factor in motility and pilus formation in the cyanobacterium Synechocystis sp. strain PCC6803.

Bhaya D, Watanabe N, Ogawa T, Grossman AR.

Proc Natl Acad Sci U S A. 1999 Mar 16;96(6):3188-93.


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