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Items: 1 to 50 of 272

1.

The ocular surface after simple limbal epithelial transplant (SLET): A high-resolution OCT study of the early postoperative period.

Ray Chaudhuri B, Bhaduri A, Sengupta M.

Indian J Ophthalmol. 2019 Aug;67(8):1348-1350. doi: 10.4103/ijo.IJO_1722_18.

2.

Neuronal vulnerability and multilineage diversity in multiple sclerosis.

Schirmer L, Velmeshev D, Holmqvist S, Kaufmann M, Werneburg S, Jung D, Vistnes S, Stockley JH, Young A, Steindel M, Tung B, Goyal N, Bhaduri A, Mayer S, Engler JB, Bayraktar OA, Franklin RJM, Haeussler M, Reynolds R, Schafer DP, Friese MA, Shiow LR, Kriegstein AR, Rowitch DH.

Nature. 2019 Jul 17. doi: 10.1038/s41586-019-1404-z. [Epub ahead of print]

PMID:
31316211
3.

Single-cell genomics identifies cell type-specific molecular changes in autism.

Velmeshev D, Schirmer L, Jung D, Haeussler M, Perez Y, Mayer S, Bhaduri A, Goyal N, Rowitch DH, Kriegstein AR.

Science. 2019 May 17;364(6441):685-689. doi: 10.1126/science.aav8130.

PMID:
31097668
4.

Simultaneous diagnosis of unilateral retinoblastoma and contralateral optic pathway glioma in a child with neurofibromatosis type 1.

Das A, Ghosh P, Zameer L, Ramprasad VL, Bhaduri A.

Pediatr Hematol Oncol. 2019 Mar;36(2):82-85. doi: 10.1080/08880018.2019.1591550. Epub 2019 Apr 9. No abstract available.

PMID:
30963792
5.

A prospective randomized, double-blind, placebo-controlled, dose-response relationship study to investigate efficacy of fructo-oligosaccharides (FOS) on human gut microflora.

Tandon D, Haque MM, Gote M, Jain M, Bhaduri A, Dubey AK, Mande SS.

Sci Rep. 2019 Apr 2;9(1):5473. doi: 10.1038/s41598-019-41837-3.

6.

Multimodal Single-Cell Analysis Reveals Physiological Maturation in the Developing Human Neocortex.

Mayer S, Chen J, Velmeshev D, Mayer A, Eze UC, Bhaduri A, Cunha CE, Jung D, Arjun A, Li E, Alvarado B, Wang S, Lovegren N, Gonzales ML, Szpankowski L, Leyrat A, West JAA, Panagiotakos G, Alvarez-Buylla A, Paredes MF, Nowakowski TJ, Pollen AA, Kriegstein AR.

Neuron. 2019 Apr 3;102(1):143-158.e7. doi: 10.1016/j.neuron.2019.01.027. Epub 2019 Feb 12.

PMID:
30770253
7.

Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution.

Pollen AA, Bhaduri A, Andrews MG, Nowakowski TJ, Meyerson OS, Mostajo-Radji MA, Di Lullo E, Alvarado B, Bedolli M, Dougherty ML, Fiddes IT, Kronenberg ZN, Shuga J, Leyrat AA, West JA, Bershteyn M, Lowe CB, Pavlovic BJ, Salama SR, Haussler D, Eichler EE, Kriegstein AR.

Cell. 2019 Feb 7;176(4):743-756.e17. doi: 10.1016/j.cell.2019.01.017.

PMID:
30735633
8.

Aripiprazole compared with placebo for auditory verbal hallucinations in youth with borderline personality disorder: Protocol for the VERBATIM randomized controlled trial.

Chanen AM, Betts J, Jackson H, McGorry P, Nelson B, Cotton SM, Bartholomeusz C, Jovev M, Ratheesh A, Davey C, Pantelis C, McCutcheon L, Francey S, Bhaduri A, Lowe D, Rayner V, Thompson K.

Early Interv Psychiatry. 2019 Jan 28. doi: 10.1111/eip.12774. [Epub ahead of print]

PMID:
30689305
9.

Shared and derived features of cellular diversity in the human cerebral cortex.

Miller DJ, Bhaduri A, Sestan N, Kriegstein A.

Curr Opin Neurobiol. 2019 Jun;56:117-124. doi: 10.1016/j.conb.2018.12.005. Epub 2019 Jan 21. Review.

PMID:
30677551
10.

Neuroserpin expression during human brain development and in adult brain revealed by immunohistochemistry and single cell RNA sequencing.

Adorjan I, Tyler T, Bhaduri A, Demharter S, Finszter CK, Bako M, Sebok OM, Nowakowski TJ, Khodosevich K, Møllgård K, Kriegstein AR, Shi L, Hoerder-Suabedissen A, Ansorge O, Molnár Z.

J Anat. 2019 Jan 15. doi: 10.1111/joa.12931. [Epub ahead of print]

PMID:
30644551
11.

Tuning the Mycobacterium tuberculosis Alternative Sigma Factor SigF through the Multidomain Regulator Rv1364c and Osmosensory Kinase Protein Kinase D.

Misra R, Menon D, Arora G, Virmani R, Gaur M, Naz S, Jaisinghani N, Bhaduri A, Bothra A, Maji A, Singhal A, Karwal P, Hentschker C, Becher D, Rao V, Nandicoori VK, Gandotra S, Singh Y.

J Bacteriol. 2019 Mar 13;201(7). pii: e00725-18. doi: 10.1128/JB.00725-18. Print 2019 Apr 1.

PMID:
30642988
12.

The Functional Proximal Proteome of Oncogenic Ras Includes mTORC2.

Kovalski JR, Bhaduri A, Zehnder AM, Neela PH, Che Y, Wozniak GG, Khavari PA.

Mol Cell. 2019 Feb 21;73(4):830-844.e12. doi: 10.1016/j.molcel.2018.12.001. Epub 2019 Jan 10.

PMID:
30639242
13.

Single-cell sequencing paints diverse pictures of the brain.

Bhaduri A, Nowakowski TJ.

Nature. 2018 Nov;563(7729):38-39. doi: 10.1038/d41586-018-07027-3. No abstract available.

PMID:
30382219
14.

LogMPIE, pan-India profiling of the human gut microbiome using 16S rRNA sequencing.

Dubey AK, Uppadhyaya N, Nilawe P, Chauhan N, Kumar S, Gupta UA, Bhaduri A.

Sci Data. 2018 Oct 30;5:180232. doi: 10.1038/sdata.2018.232.

15.

Primary limbal stem cell transplantation in the surgical management of extensive ocular surface squamous neoplasia involving the limbus.

Narang P, Mittal V, Menon V, Bhaduri A, Chaudhuri BR, Honavar SG.

Indian J Ophthalmol. 2018 Nov;66(11):1569-1573. doi: 10.4103/ijo.IJO_348_18.

16.

Identification of cell types in a mouse brain single-cell atlas using low sampling coverage.

Bhaduri A, Nowakowski TJ, Pollen AA, Kriegstein AR.

BMC Biol. 2018 Oct 11;16(1):113. doi: 10.1186/s12915-018-0580-x.

17.

SimCAL: a flexible tool to compute biochemical reaction similarity.

Sivakumar TV, Bhaduri A, Duvvuru Muni RR, Park JH, Kim TY.

BMC Bioinformatics. 2018 Jul 3;19(1):254. doi: 10.1186/s12859-018-2248-5.

18.

High-risk sexual behaviour in young people with mental health disorders.

Adan Sanchez AY, McMillan E, Bhaduri A, Pehlivan N, Monson K, Badcock P, Thompson K, Killackey E, Chanen A, O'Donoghue B.

Early Interv Psychiatry. 2019 Aug;13(4):867-873. doi: 10.1111/eip.12688. Epub 2018 Jun 19.

PMID:
29920952
19.

Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis.

Fiddes IT, Lodewijk GA, Mooring M, Bosworth CM, Ewing AD, Mantalas GL, Novak AM, van den Bout A, Bishara A, Rosenkrantz JL, Lorig-Roach R, Field AR, Haeussler M, Russo L, Bhaduri A, Nowakowski TJ, Pollen AA, Dougherty ML, Nuttle X, Addor MC, Zwolinski S, Katzman S, Kriegstein A, Eichler EE, Salama SR, Jacobs FMJ, Haussler D.

Cell. 2018 May 31;173(6):1356-1369.e22. doi: 10.1016/j.cell.2018.03.051. Epub 2018 May 31.

20.

Next-generation sequencing of idiopathic multicentric and unicentric Castleman disease and follicular dendritic cell sarcomas.

Nagy A, Bhaduri A, Shahmarvand N, Shahryari J, Zehnder JL, Warnke RA, Mughal T, Ali S, Ohgami RS.

Blood Adv. 2018 Mar 13;2(5):481-491. doi: 10.1182/bloodadvances.2017009654.

21.

Cancer-Associated Long Noncoding RNA SMRT-2 Controls Epidermal Differentiation.

Lee CS, Mah A, Aros CJ, Lopez-Pajares V, Bhaduri A, Webster DE, Kretz M, Khavari PA.

J Invest Dermatol. 2018 Jun;138(6):1445-1449. doi: 10.1016/j.jid.2018.01.003. Epub 2018 Jan 31. No abstract available.

22.

Single-cell profiling of human gliomas reveals macrophage ontogeny as a basis for regional differences in macrophage activation in the tumor microenvironment.

Müller S, Kohanbash G, Liu SJ, Alvarado B, Carrera D, Bhaduri A, Watchmaker PB, Yagnik G, Di Lullo E, Malatesta M, Amankulor NM, Kriegstein AR, Lim DA, Aghi M, Okada H, Diaz A.

Genome Biol. 2017 Dec 20;18(1):234. doi: 10.1186/s13059-017-1362-4.

23.

Spiking Neural Classifier with Lumped Dendritic Nonlinearity and Binary Synapses: A Current Mode VLSI Implementation and Analysis.

Bhaduri A, Banerjee A, Roy S, Kar S, Basu A.

Neural Comput. 2018 Mar;30(3):723-760. doi: 10.1162/neco_a_01045. Epub 2017 Dec 8.

PMID:
29220305
24.

Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex.

Nowakowski TJ, Bhaduri A, Pollen AA, Alvarado B, Mostajo-Radji MA, Di Lullo E, Haeussler M, Sandoval-Espinosa C, Liu SJ, Velmeshev D, Ounadjela JR, Shuga J, Wang X, Lim DA, West JA, Leyrat AA, Kent WJ, Kriegstein AR.

Science. 2017 Dec 8;358(6368):1318-1323. doi: 10.1126/science.aap8809.

25.

Sexual functioning and experiences in young people affected by mental health disorders.

McMillan E, Adan Sanchez A, Bhaduri A, Pehlivan N, Monson K, Badcock P, Thompson K, Killackey E, Chanen A, O'Donoghue B.

Psychiatry Res. 2017 Jul;253:249-255. doi: 10.1016/j.psychres.2017.04.009. Epub 2017 Apr 5.

PMID:
28395230
26.

Identification of novel signature genes attesting arsenic-induced immune alterations in adult zebrafish (Danio rerio).

Ray A, Bhaduri A, Srivastava N, Mazumder S.

J Hazard Mater. 2017 Jan 5;321:121-131. doi: 10.1016/j.jhazmat.2016.09.001. Epub 2016 Sep 3.

PMID:
27614325
27.

ReactPRED: a tool to predict and analyze biochemical reactions.

Sivakumar TV, Giri V, Park JH, Kim TY, Bhaduri A.

Bioinformatics. 2016 Nov 15;32(22):3522-3524. Epub 2016 Aug 2.

PMID:
27485447
28.

A study of the mutational landscape of pediatric-type follicular lymphoma and pediatric nodal marginal zone lymphoma.

Ozawa MG, Bhaduri A, Chisholm KM, Baker SA, Ma L, Zehnder JL, Luna-Fineman S, Link MP, Merker JD, Arber DA, Ohgami RS.

Mod Pathol. 2016 Oct;29(10):1212-20. doi: 10.1038/modpathol.2016.102. Epub 2016 Jun 24.

29.

Phylogenetic and Structural Analysis of Polyketide Synthases in Aspergilli.

Bhetariya PJ, Prajapati M, Bhaduri A, Mandal RS, Varma A, Madan T, Singh Y, Sarma PU.

Evol Bioinform Online. 2016 May 10;12:109-19. doi: 10.4137/EBO.S32694. eCollection 2016.

30.

Quantitative Assessment of Heart Rate Dynamics during Meditation: An ECG Based Study with Multi-Fractality and Visibility Graph.

Bhaduri A, Ghosh D.

Front Physiol. 2016 Feb 16;7:44. doi: 10.3389/fphys.2016.00044. eCollection 2016.

31.

Network Analysis Identifies Mitochondrial Regulation of Epidermal Differentiation by MPZL3 and FDXR.

Bhaduri A, Ungewickell A, Boxer LD, Lopez-Pajares V, Zarnegar BJ, Khavari PA.

Dev Cell. 2015 Nov 23;35(4):444-57. doi: 10.1016/j.devcel.2015.10.023.

32.

The noncoding RNAs SNORD50A and SNORD50B bind K-Ras and are recurrently deleted in human cancer.

Siprashvili Z, Webster DE, Johnston D, Shenoy RM, Ungewickell AJ, Bhaduri A, Flockhart R, Zarnegar BJ, Che Y, Meschi F, Puglisi JD, Khavari PA.

Nat Genet. 2016 Jan;48(1):53-8. doi: 10.1038/ng.3452. Epub 2015 Nov 23.

33.

The Tussle Between Mycobacteria and Host: To Eat or Not To Eat.

Bhaduri A, Misra R, Dhamija N.

Indian J Microbiol. 2015 Dec;55(4):456-9. doi: 10.1007/s12088-015-0541-9. Epub 2015 Jul 11.

34.

Expression profiling of lymph nodes in tuberculosis patients reveal inflammatory milieu at site of infection.

Maji A, Misra R, Kumar Mondal A, Kumar D, Bajaj D, Singhal A, Arora G, Bhaduri A, Sajid A, Bhatia S, Singh S, Singh H, Rao V, Dash D, Baby Shalini E, Sarojini Michael J, Chaudhary A, Gokhale RS, Singh Y.

Sci Rep. 2015 Oct 15;5:15214. doi: 10.1038/srep15214.

35.

Genomic analysis of mycosis fungoides and Sézary syndrome identifies recurrent alterations in TNFR2.

Ungewickell A, Bhaduri A, Rios E, Reuter J, Lee CS, Mah A, Zehnder A, Ohgami R, Kulkarni S, Armstrong R, Weng WK, Gratzinger D, Tavallaee M, Rook A, Snyder M, Kim Y, Khavari PA.

Nat Genet. 2015 Sep;47(9):1056-60. doi: 10.1038/ng.3370. Epub 2015 Aug 10.

36.

RxnSim: a tool to compare biochemical reactions.

Giri V, Sivakumar TV, Cho KM, Kim TY, Bhaduri A.

Bioinformatics. 2015 Nov 15;31(22):3712-4. doi: 10.1093/bioinformatics/btv416. Epub 2015 Jul 17.

PMID:
26187943
37.

Tracking sesamin synthase gene expression through seed maturity in wild and cultivated sesame species--a domestication footprint.

Pathak N, Bhaduri A, Bhat KV, Rai AK.

Plant Biol (Stuttg). 2015 Sep;17(5):1039-46. doi: 10.1111/plb.12327. Epub 2015 Apr 9.

PMID:
25754459
38.

Recurrent point mutations in the kinetochore gene KNSTRN in cutaneous squamous cell carcinoma.

Lee CS, Bhaduri A, Mah A, Johnson WL, Ungewickell A, Aros CJ, Nguyen CB, Rios EJ, Siprashvili Z, Straight A, Kim J, Aasi SZ, Khavari PA.

Nat Genet. 2014 Oct;46(10):1060-2. doi: 10.1038/ng.3091. Epub 2014 Sep 7.

39.

Recent Developments in Anti-dotes Against Anthrax.

Dhasmana N, Singh LK, Bhaduri A, Misra R, Singh Y.

Recent Pat Antiinfect Drug Discov. 2014;9(2):83-96. Review.

PMID:
25174439
40.

Quantitative analysis of mammalian translation initiation sites by FACS-seq.

Noderer WL, Flockhart RJ, Bhaduri A, Diaz de Arce AJ, Zhang J, Khavari PA, Wang CL.

Mol Syst Biol. 2014 Aug 28;10:748. doi: 10.15252/msb.20145136.

41.

clpC operon regulates cell architecture and sporulation in Bacillus anthracis.

Singh LK, Dhasmana N, Sajid A, Kumar P, Bhaduri A, Bharadwaj M, Gandotra S, Kalia VC, Das TK, Goel AK, Pomerantsev AP, Misra R, Gerth U, Leppla SH, Singh Y.

Environ Microbiol. 2015 Mar;17(3):855-65. doi: 10.1111/1462-2920.12548. Epub 2014 Jul 17.

42.

Mycobacterium tuberculosis cyclophilin A uses novel signal sequence for secretion and mimics eukaryotic cyclophilins for interaction with host protein repertoire.

Bhaduri A, Misra R, Maji A, Bhetaria PJ, Mishra S, Arora G, Singh LK, Dhasmana N, Dubey N, Virdi JS, Singh Y.

PLoS One. 2014 Feb 4;9(2):e88090. doi: 10.1371/journal.pone.0088090. eCollection 2014.

43.

Magnetic resonance volumetry reveals focal brain atrophy in transient epileptic amnesia.

Butler C, van Erp W, Bhaduri A, Hammers A, Heckemann R, Zeman A.

Epilepsy Behav. 2013 Sep;28(3):363-9. doi: 10.1016/j.yebeh.2013.05.018. Epub 2013 Jul 3.

PMID:
23832133
44.

Effect of psycho-educative intervention on knowledge about illness and self-care in patients with schizophrenia.

Baruah A, Bhaduri A, Deuri SK.

Nurs J India. 2012 Jul-Aug;103(4):188-90.

PMID:
23534179
45.

Esophageal adenocarcinoma versus squamous cell carcinoma: retrospective hospital-based analysis of a 12-year temporal trend.

Bhome R, Desai D, Abraham P, Joshi A, Gupta T, Bhaduri A, Kapadia A, Patel K, Bhome R.

Indian J Gastroenterol. 2012 Dec;31(6):340-2. doi: 10.1007/s12664-012-0250-9. Epub 2012 Sep 16.

PMID:
22983840
46.

Transcriptome sequencing in Sezary syndrome identifies Sezary cell and mycosis fungoides-associated lncRNAs and novel transcripts.

Lee CS, Ungewickell A, Bhaduri A, Qu K, Webster DE, Armstrong R, Weng WK, Aros CJ, Mah A, Chen RO, Lin M, Sundram U, Chang HY, Kretz M, Kim YH, Khavari PA.

Blood. 2012 Oct 18;120(16):3288-97. doi: 10.1182/blood-2012-04-423061. Epub 2012 Aug 30.

47.

Interventional study to strengthen the health promoting behaviours of pregnant women to prevent anaemia in southern India.

Noronha JA, Bhaduri A, Bhat HV, Kamath A.

Midwifery. 2013 Jul;29(7):e35-41. doi: 10.1016/j.midw.2012.07.014. Epub 2012 Aug 24.

PMID:
22921159
48.

Enhancement of the substrate scope of transketolase.

Ranoux A, Karmee SK, Jin J, Bhaduri A, Caiazzo A, Arends IW, Hanefeld U.

Chembiochem. 2012 Sep 3;13(13):1921-31. doi: 10.1002/cbic.201200240. Epub 2012 Jul 23.

PMID:
22821820
49.

Rapid identification of non-human sequences in high-throughput sequencing datasets.

Bhaduri A, Qu K, Lee CS, Ungewickell A, Khavari PA.

Bioinformatics. 2012 Apr 15;28(8):1174-5. doi: 10.1093/bioinformatics/bts100. Epub 2012 Feb 28.

50.

Custom ocular prosthesis in children: how often is a change required?

Raizada D, Raizada K, Naik M, Murthy R, Bhaduri A, Honavar SG.

Orbit. 2011 Oct;30(5):208-13. doi: 10.3109/01676830.2011.580035.

PMID:
21957949

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