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Items: 46

1.

Elimination prospects of the Dutch HIV epidemic among men who have sex with men in the era of preexposure prophylaxis.

Rozhnova G, Heijne J, Bezemer D, van Sighem A, Presanis A, De Angelis D, Kretzschmar M.

AIDS. 2018 Nov 13;32(17):2615-2623. doi: 10.1097/QAD.0000000000002050.

2.

AIDS Therapy Evaluation in the Netherlands (ATHENA) national observational HIV cohort: cohort profile.

Boender TS, Smit C, Sighem AV, Bezemer D, Ester CJ, Zaheri S, Wit FWNM, Reiss P; ATHENA national observational HIV cohort.

BMJ Open. 2018 Sep 24;8(9):e022516. doi: 10.1136/bmjopen-2018-022516.

3.

Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver.

Wymant C, Blanquart F, Golubchik T, Gall A, Bakker M, Bezemer D, Croucher NJ, Hall M, Hillebregt M, Ong SH, Ratmann O, Albert J, Bannert N, Fellay J, Fransen K, Gourlay A, Grabowski MK, Gunsenheimer-Bartmeyer B, Günthard HF, Kivelä P, Kouyos R, Laeyendecker O, Liitsola K, Meyer L, Porter K, Ristola M, van Sighem A, Berkhout B, Cornelissen M, Kellam P, Reiss P, Fraser C; BEEHIVE Collaboration.

Virus Evol. 2018 May 18;4(1):vey007. doi: 10.1093/ve/vey007. eCollection 2018 Jan.

4.

Correction: Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe.

Blanquart F, Wymant C, Cornelissen M, Gall A, Bakker M, Bezemer D, Hall M, Hillebregt M, Ong SH, Albert J, Bannert N, Fellay J, Fransen K, Gourlay AJ, Grabowski MK, Gunsenheimer-Bartmeyer B, Günthard HF, Kivelä P, Kouyos R, Laeyendecker O, Liitsola K, Meyer L, Porter K, Ristola M, van Sighem A, Vanham G, Berkhout B, Kellam P, Reiss P, Fraser C; BEEHIVE collaboration.

PLoS Biol. 2017 Jul 13;15(7):e1002608. doi: 10.1371/journal.pbio.1002608. eCollection 2017 Jul.

5.

Limited overlap between phylogenetic HIV and hepatitis C virus clusters illustrates the dynamic sexual network structure of Dutch HIV-infected MSM.

Vanhommerig JW, Bezemer D, Molenkamp R, Van Sighem AI, Smit C, Arends JE, Lauw FN, Brinkman K, Rijnders BJ, Newsum AM, Bruisten SM, Prins M, Van Der Meer JT, Van De Laar TJ, Schinkel J; MOSAIC study and the ATHENA national observational cohort.

AIDS. 2017 Sep 24;31(15):2147-2158. doi: 10.1097/QAD.0000000000001592.

PMID:
28692530
6.

Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe.

Blanquart F, Wymant C, Cornelissen M, Gall A, Bakker M, Bezemer D, Hall M, Hillebregt M, Ong SH, Albert J, Bannert N, Fellay J, Fransen K, Gourlay AJ, Grabowski MK, Gunsenheimer-Bartmeyer B, Günthard HF, Kivelä P, Kouyos R, Laeyendecker O, Liitsola K, Meyer L, Porter K, Ristola M, van Sighem A, Vanham G, Berkhout B, Kellam P, Reiss P, Fraser C; BEEHIVE collaboration.

PLoS Biol. 2017 Jun 12;15(6):e2001855. doi: 10.1371/journal.pbio.2001855. eCollection 2017 Jun. Erratum in: PLoS Biol. 2017 Jul 13;15(7):e1002608.

7.

Phylogenetic evidence for underreporting of male-to-male sex among human immunodeficiency virus-infected donors in the Netherlands and Flanders.

van de Laar TJ, Bezemer D, van Laethem K, Vandewalle G, de Smet A, van Wijngaerden E, Claas EC, van Sighem AI, Vandamme AM, Compernolle V, Zaaijer HL.

Transfusion. 2017 May;57(5):1235-1247. doi: 10.1111/trf.14097. Epub 2017 Apr 4.

PMID:
28375576
8.

From clinical sample to complete genome: Comparing methods for the extraction of HIV-1 RNA for high-throughput deep sequencing.

Cornelissen M, Gall A, Vink M, Zorgdrager F, Binter Š, Edwards S, Jurriaans S, Bakker M, Ong SH, Gras L, van Sighem A, Bezemer D, de Wolf F, Reiss P, Kellam P, Berkhout B, Fraser C, van der Kuyl AC; BEEHIVE Consortium.

Virus Res. 2017 Jul 15;239:10-16. doi: 10.1016/j.virusres.2016.08.004. Epub 2016 Aug 4.

9.

Low-molecular-weight heparin and aspirin in the prevention of recurrent early-onset pre-eclampsia in women with antiphospholipid antibodies: the FRUIT-RCT.

van Hoorn ME, Hague WM, van Pampus MG, Bezemer D, de Vries JI; FRUIT Investigators.

Eur J Obstet Gynecol Reprod Biol. 2016 Feb;197:168-73. doi: 10.1016/j.ejogrb.2015.12.011. Epub 2015 Dec 19.

PMID:
26771908
10.

Sources of HIV infection among men having sex with men and implications for prevention.

Ratmann O, van Sighem A, Bezemer D, Gavryushkina A, Jurriaans S, Wensing A, de Wolf F, Reiss P, Fraser C; ATHENA observational cohort.

Sci Transl Med. 2016 Jan 6;8(320):320ra2. doi: 10.1126/scitranslmed.aad1863.

11.

A Method to Estimate the Size and Characteristics of HIV-positive Populations Using an Individual-based Stochastic Simulation Model.

Nakagawa F, van Sighem A, Thiebaut R, Smith C, Ratmann O, Cambiano V, Albert J, Amato-Gauci A, Bezemer D, Campbell C, Commenges D, Donoghoe M, Ford D, Kouyos R, Lodwick R, Lundgren J, Pantazis N, Pharris A, Quinten C, Thorne C, Touloumi G, Delpech V, Phillips A; SSOPHIE project working group in EuroCoord.

Epidemiology. 2016 Mar;27(2):247-56. doi: 10.1097/EDE.0000000000000423. Erratum in: Epidemiology. 2016 May;27(3):e24.

12.

CD4+ cell dynamics in untreated HIV-1 infection: overall rates, and effects of age, viral load, sex and calendar time.

Cori A, Pickles M, van Sighem A, Gras L, Bezemer D, Reiss P, Fraser C.

AIDS. 2015 Nov 28;29(18):2435-46. doi: 10.1097/QAD.0000000000000854.

13.

Dispersion of the HIV-1 Epidemic in Men Who Have Sex with Men in the Netherlands: A Combined Mathematical Model and Phylogenetic Analysis.

Bezemer D, Cori A, Ratmann O, van Sighem A, Hermanides HS, Dutilh BE, Gras L, Rodrigues Faria N, van den Hengel R, Duits AJ, Reiss P, de Wolf F, Fraser C; ATHENA observational cohort.

PLoS Med. 2015 Nov 3;12(11):e1001898; discussion e1001898. doi: 10.1371/journal.pmed.1001898. eCollection 2015 Nov.

14.

Estimating HIV Incidence, Time to Diagnosis, and the Undiagnosed HIV Epidemic Using Routine Surveillance Data.

van Sighem A, Nakagawa F, De Angelis D, Quinten C, Bezemer D, de Coul EO, Egger M, de Wolf F, Fraser C, Phillips A.

Epidemiology. 2015 Sep;26(5):653-60. doi: 10.1097/EDE.0000000000000324.

15.

Low-molecular-weight heparin for prevention of placenta-mediated pregnancy complications: protocol for a systematic review and individual patient data meta-analysis (AFFIRM).

Rodger MA, Langlois NJ, de Vries JI, Rey E, Gris JC, Martinelli I, Schleussner E, Ramsay T, Mallick R, Skidmore B, Middeldorp S, Bates S, Petroff D, Bezemer D, van Hoorn ME, Abheiden CN, Perna A, de Jong P, Kaaja R.

Syst Rev. 2014 Jun 26;3:69. doi: 10.1186/2046-4053-3-69.

16.

How effectively can HIV phylogenies be used to measure heritability?

Shirreff G, Alizon S, Cori A, Günthard HF, Laeyendecker O, van Sighem A, Bezemer D, Fraser C.

Evol Med Public Health. 2013 Jan;2013(1):209-24. doi: 10.1093/emph/eot019. Epub 2013 Sep 13.

17.

HIV Type 1 transmission networks among men having sex with men and heterosexuals in Kenya.

Bezemer D, Faria NR, Hassan A, Hamers RL, Mutua G, Anzala O, Mandaliya K, Cane P, Berkley JA, Rinke de Wit TF, Wallis C, Graham SM, Price MA, Coutinho RA, Sanders EJ.

AIDS Res Hum Retroviruses. 2014 Feb;30(2):118-26. doi: 10.1089/AID.2013.0171. Epub 2013 Sep 17.

18.

Has the rate of CD4 cell count decline before initiation of antiretroviral therapy changed over the course of the Dutch HIV epidemic among MSM?

Gras L, Geskus RB, Jurriaans S, Bakker M, van Sighem A, Bezemer D, Fraser C, Prins JM, Berkhout B, de Wolf F; ATHENA National Observational Cohort.

PLoS One. 2013 May 27;8(5):e64437. doi: 10.1371/journal.pone.0064437. Print 2013.

19.

Resurgence of HIV infection among men who have sex with men in Switzerland: mathematical modelling study.

van Sighem A, Vidondo B, Glass TR, Bucher HC, Vernazza P, Gebhardt M, de Wolf F, Derendinger S, Jeannin A, Bezemer D, Fraser C, Low N; Swiss HIV Cohort Study.

PLoS One. 2012;7(9):e44819. Epub 2012 Sep 14.

20.

Increasing sexual risk behaviour among Dutch men who have sex with men: mathematical models versus prospective cohort data.

van Sighem A, Jansen I, Bezemer D, De Wolf F, Prins M, Stolte I, Fraser C.

AIDS. 2012 Sep 10;26(14):1840-3. doi: 10.1097/QAD.0b013e3283574df9.

PMID:
22781219
21.

State Patty's Day: College Student Drinking and Local Crime Increased on a Student-constructed Holiday.

Lefkowitz ES, Patrick ME, Morgan NR, Bezemer DH, Vasilenko SA.

J Adolesc Res. 2012 May;27(3):323-350. Epub 2011 Oct 17.

22.

Etiology of acute gastroenteritis in children requiring hospitalization in the Netherlands.

Friesema IH, de Boer RF, Duizer E, Kortbeek LM, Notermans DW, Norbruis OF, Bezemer DD, van Heerbeek H, van Andel RN, van Enk JG, Fraaij PL, Koopmans MP, Kooistra-Smid AM, van Duynhoven YT.

Eur J Clin Microbiol Infect Dis. 2012 Apr;31(4):405-15. doi: 10.1007/s10096-011-1320-0. Epub 2011 Jul 3.

PMID:
21725865
23.

27 years of the HIV epidemic amongst men having sex with men in the Netherlands: an in depth mathematical model-based analysis.

Bezemer D, de Wolf F, Boerlijst MC, van Sighem A, Hollingsworth TD, Fraser C.

Epidemics. 2010 Jun;2(2):66-79. doi: 10.1016/j.epidem.2010.04.001. Epub 2010 Apr 9.

PMID:
21352777
24.

Lower mortality and earlier start of combination antiretroviral therapy in patients tested repeatedly for HIV than in those with a positive first test.

Gras L, van Sighem A, Bezemer D, Smit C, Wit F, de Wolf F; ATHENA national observational cohort study.

AIDS. 2011 Mar 27;25(6):813-8. doi: 10.1097/QAD.0b013e3283454cd7.

PMID:
21330906
25.

Transient lowering of the viral set point after temporary antiretroviral therapy of primary HIV type 1 infection.

Steingrover R, Garcia EF, van Valkengoed IG, Bekker V, Bezemer D, Kroon FP, Dekker L, Prins M, de Wolf F, Lange JM, Prins JM.

AIDS Res Hum Retroviruses. 2010 Apr;26(4):379-87. doi: 10.1089/aid.2009.0041.

PMID:
20377419
26.

Transmission networks of HIV-1 among men having sex with men in the Netherlands.

Bezemer D, van Sighem A, Lukashov VV, van der Hoek L, Back N, Schuurman R, Boucher CA, Claas EC, Boerlijst MC, Coutinho RA, de Wolf F; ATHENA observational cohort.

AIDS. 2010 Jan 16;24(2):271-82. doi: 10.1097/QAD.0b013e328333ddee.

PMID:
20010072
27.

A new graph and scoring system simplified analysis of changing states: disease remissions in a rheumatoid arthritis clinical trial.

Boers M, Berkhof J, Twisk JW, Adèr HJ, Bezemer D, Knol D, Kostense PJ, Kuik DJ, Uitdehaag BM.

J Clin Epidemiol. 2010 Jun;63(6):633-7. doi: 10.1016/j.jclinepi.2009.08.021. Epub 2009 Dec 5.

PMID:
19963345
28.

Viral load levels measured at set-point have risen over the last decade of the HIV epidemic in the Netherlands.

Gras L, Jurriaans S, Bakker M, van Sighem A, Bezemer D, Fraser C, Lange J, Prins JM, Berkhout B, de Wolf F; ATHENA National Observational Cohort Study.

PLoS One. 2009 Oct 7;4(10):e7365. doi: 10.1371/journal.pone.0007365.

29.

Childhood predictors of desistance and level of persistence in offending in early onset offenders.

van Domburgh L, Loeber R, Bezemer D, Stallings R, Stouthamer-Loeber M.

J Abnorm Child Psychol. 2009 Oct;37(7):967-80. doi: 10.1007/s10802-009-9329-x.

30.

Colonoscopic yield of colorectal neoplasia in daily clinical practice.

Terhaar Sive Droste JS, Craanen ME, van der Hulst RW, Bartelsman JF, Bezemer DP, Cappendijk KR, Meijer GA, Morsink LM, Snel P, Tuynman HA, van Wanrooy RL, Wesdorp EI, Mulder CJ.

World J Gastroenterol. 2009 Mar 7;15(9):1085-92.

31.

A resurgent HIV-1 epidemic among men who have sex with men in the era of potent antiretroviral therapy.

Bezemer D, de Wolf F, Boerlijst MC, van Sighem A, Hollingsworth TD, Prins M, Geskus RB, Gras L, Coutinho RA, Fraser C.

AIDS. 2008 May 31;22(9):1071-7. doi: 10.1097/QAD.0b013e3282fd167c.

PMID:
18520351
32.

Patients with oral cancer developing from pre-existing oral leukoplakia: do they do better than those with de novo oral cancer?

Weijers M, Ten Hove I, Allard RH, Bezemer DP, van der Waal I.

J Oral Pathol Med. 2008 Mar;37(3):134-6. doi: 10.1111/j.1600-0714.2007.00601.x.

PMID:
18251936
33.

Combination antiretroviral therapy failure and HIV super-infection.

Bezemer D, van Sighem A, de Wolf F, Cornelissen M, van der Kuyl AC, Jurriaans S, van der Hoek L, Prins M, Coutinho RA, Lukashov VV.

AIDS. 2008 Jan 11;22(2):309-11.

PMID:
18097235
34.

The Gypsy Database (GyDB) of mobile genetic elements.

Lloréns C, Futami R, Bezemer D, Moya A.

Nucleic Acids Res. 2008 Jan;36(Database issue):D38-46. Epub 2007 Sep 25.

35.

Evolution of transmitted HIV-1 with drug-resistance mutations in the absence of therapy: effects on CD4+ T-cell count and HIV-1 RNA load.

Bezemer D, de Ronde A, Prins M, Porter K, Gifford R, Pillay D, Masquelier B, Fleury H, Dabis F, Back N, Jurriaans S, van der Hoek L; CASCADE collaboration.

Antivir Ther. 2006;11(2):173-8.

PMID:
16640098
36.

Repeats in the kringle IV encoding domains in the Apo(a) gene and serum lipoprotein(a) level do not contribute to the risk for avascular necrosis of the bone (AVN) in pediatric acute lymphoblastic leukemia.

van Beek RD, Bezemer DD, Meijerink JP, de Muinck Keizer-Schrama SM, Haas OA, Te Winkel L, Pieters R, van den Heuvel-Eibrink M.

Leukemia. 2006 May;20(5):879-80. No abstract available.

PMID:
16525499
37.

Declining trend in transmission of drug-resistant HIV-1 in Amsterdam.

Bezemer D, Jurriaans S, Prins M, van der Hoek L, Prins JM, de Wolf F, Berkhout B, Coutinho R, Back NK.

AIDS. 2004 Jul 23;18(11):1571-7.

PMID:
15238775
38.

[Three new observational scales for use in Dutch nursing homes: scales from the Resident Assessment Instrument for Activities of Daily Living, cognition and depression].

Gerritsen D, Ooms M, Steverink N, Frijters D, Bezemer D, Ribbe M.

Tijdschr Gerontol Geriatr. 2004 Apr;35(2):55-64. Dutch.

PMID:
15230054
39.

The status of the deep surgical margins in tongue and floor of mouth squamous cell carcinoma and risk of local recurrence; an analysis of 68 patients.

Weijers M, Snow GB, Bezemer DP, van dr Wal JE, van der Waal I.

Int J Oral Maxillofac Surg. 2004 Mar;33(2):146-9.

PMID:
15050070
40.

Selection on coding regions determined Hox7 genes evolution.

Fares MA, Bezemer D, Moya A, Marín I.

Mol Biol Evol. 2003 Dec;20(12):2104-12. Epub 2003 Aug 29.

PMID:
12949154
41.

Early versus late diagnosis: psychological impact on parents of children with cystic fibrosis.

Mérelle ME, Huisman J, Alderden-van der Vecht A, Taat F, Bezemer D, Griffioen RW, Brinkhorst G, Dankert-Roelse JE.

Pediatrics. 2003 Feb;111(2):346-50.

PMID:
12563062
42.

Neuromotor function and school performance in 7-year-old children born as high-risk preterm infants.

Samsom JF, de Groot L, Cranendonk A, Bezemer D, Lafeber HN, Fetter WP.

J Child Neurol. 2002 May;17(5):325-32.

PMID:
12150577
43.

Incidence of clinically manifest ulcers and their complications in patients with rheumatoid arthritis.

Steen KS, Lems WF, Aertsen J, Bezemer D, Dijkmans BA.

Ann Rheum Dis. 2001 May;60(5):443-7.

44.
45.

Late-life depressive disorder in the community. II. The relationship between psychiatric history, MMSE and family history.

van Ojen R, Hooijer C, Bezemer D, Jonker C, Lindeboom J, van Tilburg W.

Br J Psychiatry. 1995 Mar;166(3):316-9.

PMID:
7788122
46.

Late-life depressive disorder in the community. I. The relationship between MMSE score and depression in subjects with and without psychiatric history.

van Ojen R, Hooijer C, Bezemer D, Jonker C, Lindeboom J, van Tilburg W.

Br J Psychiatry. 1995 Mar;166(3):311-5, 319.

PMID:
7788121

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