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Items: 22

1.

eDiVA-Classification and prioritization of pathogenic variants for clinical diagnostics.

Bosio M, Drechsel O, Rahman R, Muyas F, Rabionet R, Bezdan D, Domenech Salgado L, Hor HG, Schott JJ, Munell F, Colobran R, Macaya A, Estivill X, Ossowski S.

Hum Mutat. 2019 Apr 26. doi: 10.1002/humu.23772. [Epub ahead of print]

PMID:
31026367
2.

The NASA Twins Study: A multidimensional analysis of a year-long human spaceflight.

Garrett-Bakelman FE, Darshi M, Green SJ, Gur RC, Lin L, Macias BR, McKenna MJ, Meydan C, Mishra T, Nasrini J, Piening BD, Rizzardi LF, Sharma K, Siamwala JH, Taylor L, Vitaterna MH, Afkarian M, Afshinnekoo E, Ahadi S, Ambati A, Arya M, Bezdan D, Callahan CM, Chen S, Choi AMK, Chlipala GE, Contrepois K, Covington M, Crucian BE, De Vivo I, Dinges DF, Ebert DJ, Feinberg JI, Gandara JA, George KA, Goutsias J, Grills GS, Hargens AR, Heer M, Hillary RP, Hoofnagle AN, Hook VYH, Jenkinson G, Jiang P, Keshavarzian A, Laurie SS, Lee-McMullen B, Lumpkins SB, MacKay M, Maienschein-Cline MG, Melnick AM, Moore TM, Nakahira K, Patel HH, Pietrzyk R, Rao V, Saito R, Salins DN, Schilling JM, Sears DD, Sheridan CK, Stenger MB, Tryggvadottir R, Urban AE, Vaisar T, Van Espen B, Zhang J, Ziegler MG, Zwart SR, Charles JB, Kundrot CE, Scott GBI, Bailey SM, Basner M, Feinberg AP, Lee SMC, Mason CE, Mignot E, Rana BK, Smith SM, Snyder MP, Turek FW.

Science. 2019 Apr 12;364(6436). pii: eaau8650. doi: 10.1126/science.aau8650.

PMID:
30975860
3.

Single-molecule sequencing detection of N6-methyladenine in microbial reference materials.

McIntyre ABR, Alexander N, Grigorev K, Bezdan D, Sichtig H, Chiu CY, Mason CE.

Nat Commun. 2019 Feb 4;10(1):579. doi: 10.1038/s41467-019-08289-9.

4.

Minerva: an alignment- and reference-free approach to deconvolve Linked-Reads for metagenomics.

Danko DC, Meleshko D, Bezdan D, Mason C, Hajirasouliha I.

Genome Res. 2019 Jan;29(1):116-124. doi: 10.1101/gr.235499.118. Epub 2018 Dec 6.

5.

Multi-drug resistant Enterobacter bugandensis species isolated from the International Space Station and comparative genomic analyses with human pathogenic strains.

Singh NK, Bezdan D, Checinska Sielaff A, Wheeler K, Mason CE, Venkateswaran K.

BMC Microbiol. 2018 Nov 23;18(1):175. doi: 10.1186/s12866-018-1325-2.

6.

LRBA Deficiency in a Patient With a Novel Homozygous Mutation Due to Chromosome 4 Segmental Uniparental Isodisomy.

Soler-Palacín P, Garcia-Prat M, Martín-Nalda A, Franco-Jarava C, Rivière JG, Plaja A, Bezdan D, Bosio M, Martínez-Gallo M, Ossowski S, Colobran R.

Front Immunol. 2018 Oct 16;9:2397. doi: 10.3389/fimmu.2018.02397. eCollection 2018.

7.

The Microbe Directory: An annotated, searchable inventory of microbes' characteristics.

Shaaban H, Westfall DA, Mohammad R, Danko D, Bezdan D, Afshinnekoo E, Segata N, Mason CE.

Gates Open Res. 2018 Jan 5;2:3. doi: 10.12688/gatesopenres.12772.1.

8.

Whole-genome sequencing enabling the detection of a colistin-resistant hypermutating Citrobacter werkmanii strain harbouring a novel metallo-β-lactamase VIM-48.

Peter S, Bezdan D, Oberhettinger P, Vogel W, Dörfel D, Dick J, Marschal M, Liese J, Weidenmaier C, Autenrieth I, Ossowski S, Willmann M.

Int J Antimicrob Agents. 2018 Jun;51(6):867-874. doi: 10.1016/j.ijantimicag.2018.01.015. Epub 2018 May 22.

PMID:
29412174
9.

Genomic characterisation of clinical and environmental Pseudomonas putida group strains and determination of their role in the transfer of antimicrobial resistance genes to Pseudomonas aeruginosa.

Peter S, Oberhettinger P, Schuele L, Dinkelacker A, Vogel W, Dörfel D, Bezdan D, Ossowski S, Marschal M, Liese J, Willmann M.

BMC Genomics. 2017 Nov 10;18(1):859. doi: 10.1186/s12864-017-4216-2.

10.

Assessment of REPLI-g Multiple Displacement Whole Genome Amplification (WGA) Techniques for Metagenomic Applications.

Ahsanuddin S, Afshinnekoo E, Gandara J, Hakyemezoğlu M, Bezdan D, Minot S, Greenfield N, Mason CE.

J Biomol Tech. 2017 Apr;28(1):46-55. doi: 10.7171/jbt.17-2801-008. Epub 2017 Mar 21. Erratum in: J Biomol Tech. 2017 Jul;28(2):96.

11.

Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP).

Tighe S, Afshinnekoo E, Rock TM, McGrath K, Alexander N, McIntyre A, Ahsanuddin S, Bezdan D, Green SJ, Joye S, Stewart Johnson S, Baldwin DA, Bivens N, Ajami N, Carmical JR, Herriott IC, Colwell R, Donia M, Foox J, Greenfield N, Hunter T, Hoffman J, Hyman J, Jorgensen E, Krawczyk D, Lee J, Levy S, Garcia-Reyero N, Settles M, Thomas K, Gómez F, Schriml L, Kyrpides N, Zaikova E, Penterman J, Mason CE.

J Biomol Tech. 2017 Apr;28(1):31-39. doi: 10.7171/jbt.17-2801-004. Epub 2017 Mar 10. Erratum in: J Biomol Tech. 2017 Jul;28(2):93.

12.

Chromosome-level assembly of Arabidopsis thaliana Ler reveals the extent of translocation and inversion polymorphisms.

Zapata L, Ding J, Willing EM, Hartwig B, Bezdan D, Jiao WB, Patel V, Velikkakam James G, Koornneef M, Ossowski S, Schneeberger K.

Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):E4052-60. doi: 10.1073/pnas.1607532113. Epub 2016 Jun 27.

13.

The cis-regulatory code of Hox function in Drosophila.

Sorge S, Ha N, Polychronidou M, Friedrich J, Bezdan D, Kaspar P, Schaefer MH, Ossowski S, Henz SR, Mundorf J, Rätzer J, Papagiannouli F, Lohmann I.

EMBO J. 2015 Nov 12;34(22):2862. doi: 10.15252/embj.201593321. No abstract available.

14.

Chromatin-wide profiling of DYRK1A reveals a role as a gene-specific RNA polymerase II CTD kinase.

Di Vona C, Bezdan D, Islam AB, Salichs E, López-Bigas N, Ossowski S, de la Luna S.

Mol Cell. 2015 Feb 5;57(3):506-20. doi: 10.1016/j.molcel.2014.12.026. Epub 2015 Jan 22.

15.

Analysis of a long-term outbreak of XDR Pseudomonas aeruginosa: a molecular epidemiological study.

Willmann M, Bezdan D, Zapata L, Susak H, Vogel W, Schröppel K, Liese J, Weidenmaier C, Autenrieth IB, Ossowski S, Peter S.

J Antimicrob Chemother. 2015 May;70(5):1322-30. doi: 10.1093/jac/dku546. Epub 2015 Jan 11.

PMID:
25583750
16.

Evidence for the biogenesis of more than 1,000 novel human microRNAs.

Friedländer MR, Lizano E, Houben AJ, Bezdan D, Báñez-Coronel M, Kudla G, Mateu-Huertas E, Kagerbauer B, González J, Chen KC, LeProust EM, Martí E, Estivill X.

Genome Biol. 2014 Apr 7;15(4):R57. doi: 10.1186/gb-2014-15-4-r57.

17.

The cis-regulatory code of Hox function in Drosophila.

Sorge S, Ha N, Polychronidou M, Friedrich J, Bezdan D, Kaspar P, Schaefer MH, Ossowski S, Henz SR, Mundorf J, Rätzer J, Papagiannouli F, Lohmann I.

EMBO J. 2012 Aug 1;31(15):3323-33. doi: 10.1038/emboj.2012.179. Epub 2012 Jul 10. Erratum in: EMBO J. 2015 Nov 12;34(22):2862.

18.

The transcription factor Grainy head and the steroid hormone ecdysone cooperate during differentiation of the skin of Drosophila melanogaster.

Gangishetti U, Veerkamp J, Bezdan D, Schwarz H, Lohmann I, Moussian B.

Insect Mol Biol. 2012 Jun;21(3):283-95. doi: 10.1111/j.1365-2583.2012.01134.x. Epub 2012 Mar 27.

PMID:
22458773
19.

Antagonistic regulation of apoptosis and differentiation by the Cut transcription factor represents a tumor-suppressing mechanism in Drosophila.

Zhai Z, Ha N, Papagiannouli F, Hamacher-Brady A, Brady N, Sorge S, Bezdan D, Lohmann I.

PLoS Genet. 2012;8(3):e1002582. doi: 10.1371/journal.pgen.1002582. Epub 2012 Mar 15.

20.

Adaptive laboratory evolution--harnessing the power of biology for metabolic engineering.

Portnoy VA, Bezdan D, Zengler K.

Curr Opin Biotechnol. 2011 Aug;22(4):590-4. doi: 10.1016/j.copbio.2011.03.007. Epub 2011 Apr 14. Review.

PMID:
21497080
21.

Multifactorial regulation of a hox target gene.

Stöbe P, Stein MA, Habring-Müller A, Bezdan D, Fuchs AL, Hueber SD, Wu H, Lohmann I.

PLoS Genet. 2009 Mar;5(3):e1000412. doi: 10.1371/journal.pgen.1000412. Epub 2009 Mar 13. Erratum in: PLoS Genet. 2009 Mar;5(3). doi: 10.1371/annotation/f89de76b-0e06-4086-994c-20d64c238a46. Stein, Sokrates M A [corrected to Stein, M A Sokrates].

22.

Comparative analysis of Hox downstream genes in Drosophila.

Hueber SD, Bezdan D, Henz SR, Blank M, Wu H, Lohmann I.

Development. 2007 Jan;134(2):381-92. Epub 2006 Dec 13.

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