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Items: 20

1.

Firefly genomes illuminate parallel origins of bioluminescence in beetles.

Fallon TR, Lower SE, Chang CH, Bessho-Uehara M, Martin GJ, Bewick AJ, Behringer M, Debat HJ, Wong I, Day JC, Suvorov A, Silva CJ, Stanger-Hall KF, Hall DW, Schmitz RJ, Nelson DR, Lewis SM, Shigenobu S, Bybee SM, Larracuente AM, Oba Y, Weng JK.

Elife. 2018 Oct 16;7. pii: e36495. doi: 10.7554/eLife.36495.

2.

Genetic Diversity in Insect Metal Tolerance.

Merritt TJS, Bewick AJ.

Front Genet. 2017 Nov 7;8:172. doi: 10.3389/fgene.2017.00172. eCollection 2017. Review.

3.

Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower.

Edger PP, Smith R, McKain MR, Cooley AM, Vallejo-Marin M, Yuan Y, Bewick AJ, Ji L, Platts AE, Bowman MJ, Childs KL, Washburn JD, Schmitz RJ, Smith GD, Pires JC, Puzey JR.

Plant Cell. 2017 Sep;29(9):2150-2167. doi: 10.1105/tpc.17.00010. Epub 2017 Aug 16.

4.

Connectivity in gene coexpression networks negatively correlates with rates of molecular evolution in flowering plants.

Masalia RR, Bewick AJ, Burke JM.

PLoS One. 2017 Jul 31;12(7):e0182289. doi: 10.1371/journal.pone.0182289. eCollection 2017.

5.

Epigenomic diversification within the genus Lupinus.

Susek K, Braszewska-Zalewska A, Bewick AJ, Hasterok R, Schmitz RJ, Naganowska B.

PLoS One. 2017 Jun 22;12(6):e0179821. doi: 10.1371/journal.pone.0179821. eCollection 2017.

6.

Widespread adenine N6-methylation of active genes in fungi.

Mondo SJ, Dannebaum RO, Kuo RC, Louie KB, Bewick AJ, LaButti K, Haridas S, Kuo A, Salamov A, Ahrendt SR, Lau R, Bowen BP, Lipzen A, Sullivan W, Andreopoulos BB, Clum A, Lindquist E, Daum C, Northen TR, Kunde-Ramamoorthy G, Schmitz RJ, Gryganskyi A, Culley D, Magnuson J, James TY, O'Malley MA, Stajich JE, Spatafora JW, Visel A, Grigoriev IV.

Nat Genet. 2017 Jun;49(6):964-968. doi: 10.1038/ng.3859. Epub 2017 May 8.

7.

The evolution of CHROMOMETHYLASES and gene body DNA methylation in plants.

Bewick AJ, Niederhuth CE, Ji L, Rohr NA, Griffin PT, Leebens-Mack J, Schmitz RJ.

Genome Biol. 2017 May 1;18(1):65. doi: 10.1186/s13059-017-1195-1.

8.

Gene body DNA methylation in plants.

Bewick AJ, Schmitz RJ.

Curr Opin Plant Biol. 2017 Apr;36:103-110. doi: 10.1016/j.pbi.2016.12.007. Epub 2017 Mar 1. Review.

9.

Evolution of DNA Methylation across Insects.

Bewick AJ, Vogel KJ, Moore AJ, Schmitz RJ.

Mol Biol Evol. 2017 Mar 1;34(3):654-665. doi: 10.1093/molbev/msw264. Erratum in: Mol Biol Evol. 2017 Apr 1;34(4):1025.

10.

Widespread natural variation of DNA methylation within angiosperms.

Niederhuth CE, Bewick AJ, Ji L, Alabady MS, Kim KD, Li Q, Rohr NA, Rambani A, Burke JM, Udall JA, Egesi C, Schmutz J, Grimwood J, Jackson SA, Springer NM, Schmitz RJ.

Genome Biol. 2016 Sep 27;17(1):194.

11.

On the origin and evolutionary consequences of gene body DNA methylation.

Bewick AJ, Ji L, Niederhuth CE, Willing EM, Hofmeister BT, Shi X, Wang L, Lu Z, Rohr NA, Hartwig B, Kiefer C, Deal RB, Schmutz J, Grimwood J, Stroud H, Jacobsen SE, Schneeberger K, Zhang X, Schmitz RJ.

Proc Natl Acad Sci U S A. 2016 Aug 9;113(32):9111-6. doi: 10.1073/pnas.1604666113. Epub 2016 Jul 25.

12.

FASTmC: A Suite of Predictive Models for Nonreference-Based Estimations of DNA Methylation.

Bewick AJ, Hofmeister BT, Lee K, Zhang X, Hall DW, Schmitz RJ.

G3 (Bethesda). 2015 Dec 17;6(2):447-52. doi: 10.1534/g3.115.025668.

13.

Epigenetics in the wild.

Bewick AJ, Schmitz RJ.

Elife. 2015 May 5;4:e07808. doi: 10.7554/eLife.07808.

14.

Pan-African phylogeography of a model organism, the African clawed frog 'Xenopus laevis'.

Furman BL, Bewick AJ, Harrison TL, Greenbaum E, Gvoždík V, Kusamba C, Evans BJ.

Mol Ecol. 2015 Feb;24(4):909-25. doi: 10.1111/mec.13076. Epub 2015 Feb 3.

PMID:
25583226
15.

A large pseudoautosomal region on the sex chromosomes of the frog Silurana tropicalis.

Bewick AJ, Chain FJ, Zimmerman LB, Sesay A, Gilchrist MJ, Owens ND, Seifertova E, Krylov V, Macha J, Tlapakova T, Kubickova S, Cernohorska H, Zarsky V, Evans BJ.

Genome Biol Evol. 2013;5(6):1087-98. doi: 10.1093/gbe/evt073.

16.

Genomic dynamics of transposable elements in the western clawed frog (Silurana tropicalis).

Shen JJ, Dushoff J, Bewick AJ, Chain FJ, Evans BJ.

Genome Biol Evol. 2013;5(5):998-1009. doi: 10.1093/gbe/evt065.

17.

The pipid root.

Bewick AJ, Chain FJ, Heled J, Evans BJ.

Syst Biol. 2012 Dec 1;61(6):913-26. doi: 10.1093/sysbio/sys039. Epub 2012 Mar 20.

PMID:
22438331
18.

Evolution of the closely related, sex-related genes DM-W and DMRT1 in African clawed frogs (Xenopus).

Bewick AJ, Anderson DW, Evans BJ.

Evolution. 2011 Mar;65(3):698-712. doi: 10.1111/j.1558-5646.2010.01163.x. Epub 2010 Nov 2.

PMID:
21044062
19.

Induction of 1C aldoketoreductases and other drug dose-dependent genes upon acquisition of anthracycline resistance.

Veitch ZW, Guo B, Hembruff SL, Bewick AJ, Heibein AD, Eng J, Cull S, Maclean DA, Parissenti AM.

Pharmacogenet Genomics. 2009 Jun;19(6):477-88. doi: 10.1097/FPC.0b013e32832c484b.

PMID:
19440163
20.

Isolation and characterization of polymorphic microsatellite loci in muskrat, Ondatra zibethicus.

Laurence S, Bewick AJ, Coltman DW, Davis CS, Elsasser SC, Kidd AG, Lesbarrères D, Schulte-Hostedde AI.

Mol Ecol Resour. 2009 Mar;9(2):654-7. doi: 10.1111/j.1755-0998.2008.02501.x. Epub 2009 Jan 16.

PMID:
21564719

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