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Items: 1 to 50 of 72

1.

Independent assessment and improvement of wheat genome sequence assemblies using Fosill jumping libraries.

Lu FH, McKenzie N, Kettleborough G, Heavens D, Clark MD, Bevan MW.

Gigascience. 2018 May 1;7(5). doi: 10.1093/gigascience/giy053.

2.

Genome sequence of the progenitor of the wheat D genome Aegilops tauschii.

Luo MC, Gu YQ, Puiu D, Wang H, Twardziok SO, Deal KR, Huo N, Zhu T, Wang L, Wang Y, McGuire PE, Liu S, Long H, Ramasamy RK, Rodriguez JC, Van SL, Yuan L, Wang Z, Xia Z, Xiao L, Anderson OD, Ouyang S, Liang Y, Zimin AV, Pertea G, Qi P, Bennetzen JL, Dai X, Dawson MW, Müller HG, Kugler K, Rivarola-Duarte L, Spannagl M, Mayer KFX, Lu FH, Bevan MW, Leroy P, Li P, You FM, Sun Q, Liu Z, Lyons E, Wicker T, Salzberg SL, Devos KM, Dvořák J.

Nature. 2017 Nov 23;551(7681):498-502. doi: 10.1038/nature24486. Epub 2017 Nov 15.

PMID:
29143815
3.

An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations.

Clavijo BJ, Venturini L, Schudoma C, Accinelli GG, Kaithakottil G, Wright J, Borrill P, Kettleborough G, Heavens D, Chapman H, Lipscombe J, Barker T, Lu FH, McKenzie N, Raats D, Ramirez-Gonzalez RH, Coince A, Peel N, Percival-Alwyn L, Duncan O, Trösch J, Yu G, Bolser DM, Namaati G, Kerhornou A, Spannagl M, Gundlach H, Haberer G, Davey RP, Fosker C, Palma FD, Phillips AL, Millar AH, Kersey PJ, Uauy C, Krasileva KV, Swarbreck D, Bevan MW, Clark MD.

Genome Res. 2017 May;27(5):885-896. doi: 10.1101/gr.217117.116.

4.

Genomic innovation for crop improvement.

Bevan MW, Uauy C, Wulff BB, Zhou J, Krasileva K, Clark MD.

Nature. 2017 Mar 15;543(7645):346-354. doi: 10.1038/nature22011. Review.

PMID:
28300107
5.

Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis.

Dong H, Dumenil J, Lu FH, Na L, Vanhaeren H, Naumann C, Klecker M, Prior R, Smith C, McKenzie N, Saalbach G, Chen L, Xia T, Gonzalez N, Seguela M, Inze D, Dissmeyer N, Li Y, Bevan MW.

Genes Dev. 2017 Jan 15;31(2):197-208. doi: 10.1101/gad.292235.116. Epub 2017 Feb 6.

6.

The Mediator complex subunits MED25/PFT1 and MED8 are required for transcriptional responses to changes in cell wall arabinose composition and glucose treatment in Arabidopsis thaliana.

Seguela-Arnaud M, Smith C, Uribe MC, May S, Fischl H, McKenzie N, Bevan MW.

BMC Plant Biol. 2015 Sep 5;15:215. doi: 10.1186/s12870-015-0592-4.

7.

Correction: The Tinkerbell (Tink) Mutation Identifies the Dual-Specificity MAPK Phosphatase INDOLE-3-BUTYRIC ACID-RESPONSE5 (IBR5) as a Novel Regulator of Organ Size in Arabidopsis.

Johnson KL, Ramm S, Kappel C, Ward S, Leyser O, Sakamoto T, Kurata T, Bevan MW, Lenhard M.

PLoS One. 2015 Aug 20;10(8):e0136482. doi: 10.1371/journal.pone.0136482. eCollection 2015. No abstract available.

8.

The Tinkerbell (Tink) Mutation Identifies the Dual-Specificity MAPK Phosphatase INDOLE-3-BUTYRIC ACID-RESPONSE5 (IBR5) as a Novel Regulator of Organ Size in Arabidopsis.

Johnson KL, Ramm S, Kappel C, Ward S, Leyser O, Sakamoto T, Kurata T, Bevan MW, Lenhard M.

PLoS One. 2015 Jul 6;10(7):e0131103. doi: 10.1371/journal.pone.0131103. eCollection 2015. Erratum in: PLoS One. 2015;10(8):e0136482.

9.

TANG1, Encoding a Symplekin_C Domain-Contained Protein, Influences Sugar Responses in Arabidopsis.

Zheng L, Shang L, Chen X, Zhang L, Xia Y, Smith C, Bevan MW, Li Y, Jing HC.

Plant Physiol. 2015 Jul;168(3):1000-12. doi: 10.1104/pp.15.00288. Epub 2015 May 22.

10.

The ubiquitin receptors DA1, DAR1, and DAR2 redundantly regulate endoreduplication by modulating the stability of TCP14/15 in Arabidopsis.

Peng Y, Chen L, Lu Y, Wu Y, Dumenil J, Zhu Z, Bevan MW, Li Y.

Plant Cell. 2015 Mar;27(3):649-62. doi: 10.1105/tpc.114.132274. Epub 2015 Mar 10.

11.

The Pentatricopeptide Repeat Proteins TANG2 and ORGANELLE TRANSCRIPT PROCESSING439 Are Involved in the Splicing of the Multipartite nad5 Transcript Encoding a Subunit of Mitochondrial Complex I.

Colas des Francs-Small C, Falcon de Longevialle A, Li Y, Lowe E, Tanz SK, Smith C, Bevan MW, Small I.

Plant Physiol. 2014 Aug;165(4):1409-1416. Epub 2014 Jun 23.

12.

Glucose elevates NITRATE TRANSPORTER2.1 protein levels and nitrate transport activity independently of its HEXOKINASE1-mediated stimulation of NITRATE TRANSPORTER2.1 expression.

de Jong F, Thodey K, Lejay LV, Bevan MW.

Plant Physiol. 2014 Jan;164(1):308-20. doi: 10.1104/pp.113.230599. Epub 2013 Nov 22.

13.

The ubiquitin receptor DA1 interacts with the E3 ubiquitin ligase DA2 to regulate seed and organ size in Arabidopsis.

Xia T, Li N, Dumenil J, Li J, Kamenski A, Bevan MW, Gao F, Li Y.

Plant Cell. 2013 Sep;25(9):3347-59. doi: 10.1105/tpc.113.115063. Epub 2013 Sep 17.

14.

Genomics reveals new landscapes for crop improvement.

Bevan MW, Uauy C.

Genome Biol. 2013 Jun 24;14(6):206. doi: 10.1186/gb-2013-14-6-206. Review.

15.

A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor.

Luo MC, Gu YQ, You FM, Deal KR, Ma Y, Hu Y, Huo N, Wang Y, Wang J, Chen S, Jorgensen CM, Zhang Y, McGuire PE, Pasternak S, Stein JC, Ware D, Kramer M, McCombie WR, Kianian SF, Martis MM, Mayer KF, Sehgal SK, Li W, Gill BS, Bevan MW, Simková H, Dolezel J, Weining S, Lazo GR, Anderson OD, Dvorak J.

Proc Natl Acad Sci U S A. 2013 May 7;110(19):7940-5. doi: 10.1073/pnas.1219082110. Epub 2013 Apr 22.

16.

Control of root meristem size by DA1-RELATED PROTEIN2 in Arabidopsis.

Peng Y, Ma W, Chen L, Yang L, Li S, Zhao H, Zhao Y, Jin W, Li N, Bevan MW, Li X, Tong Y, Li Y.

Plant Physiol. 2013 Mar;161(3):1542-56. doi: 10.1104/pp.112.210237. Epub 2013 Jan 7.

17.

Analysis of the bread wheat genome using whole-genome shotgun sequencing.

Brenchley R, Spannagl M, Pfeifer M, Barker GL, D'Amore R, Allen AM, McKenzie N, Kramer M, Kerhornou A, Bolser D, Kay S, Waite D, Trick M, Bancroft I, Gu Y, Huo N, Luo MC, Sehgal S, Gill B, Kianian S, Anderson O, Kersey P, Dvorak J, McCombie WR, Hall A, Mayer KF, Edwards KJ, Bevan MW, Hall N.

Nature. 2012 Nov 29;491(7426):705-10. doi: 10.1038/nature11650.

18.

Targeted re-sequencing of the allohexaploid wheat exome.

Winfield MO, Wilkinson PA, Allen AM, Barker GL, Coghill JA, Burridge A, Hall A, Brenchley RC, D'Amore R, Hall N, Bevan MW, Richmond T, Gerhardt DJ, Jeddeloh JA, Edwards KJ.

Plant Biotechnol J. 2012 Aug;10(6):733-42. doi: 10.1111/j.1467-7652.2012.00713.x. Epub 2012 Jun 18.

19.

The ARP2/3 complex mediates guard cell actin reorganization and stomatal movement in Arabidopsis.

Jiang K, Sorefan K, Deeks MJ, Bevan MW, Hussey PJ, Hetherington AM.

Plant Cell. 2012 May;24(5):2031-40. doi: 10.1105/tpc.112.096263. Epub 2012 May 8.

20.

The plant-specific G protein γ subunit AGG3 influences organ size and shape in Arabidopsis thaliana.

Li S, Liu Y, Zheng L, Chen L, Li N, Corke F, Lu Y, Fu X, Zhu Z, Bevan MW, Li Y.

New Phytol. 2012 May;194(3):690-703. doi: 10.1111/j.1469-8137.2012.04083.x. Epub 2012 Mar 1.

21.

Painting the chromosomes of Brachypodium: current status and future prospects.

Idziak D, Betekhtin A, Wolny E, Lesniewska K, Wright J, Febrer M, Bevan MW, Jenkins G, Hasterok R.

Chromosoma. 2011 Oct;120(5):469-79. doi: 10.1007/s00412-011-0326-9. Epub 2011 Jun 11.

22.

An integrated physical, genetic and cytogenetic map of Brachypodium distachyon, a model system for grass research.

Febrer M, Goicoechea JL, Wright J, McKenzie N, Song X, Lin J, Collura K, Wissotski M, Yu Y, Ammiraju JS, Wolny E, Idziak D, Betekhtin A, Kudrna D, Hasterok R, Wing RA, Bevan MW.

PLoS One. 2010 Oct 18;5(10):e13461. doi: 10.1371/journal.pone.0013461.

23.

Distribution and characterization of more than 1000 T-DNA tags in the genome of Brachypodium distachyon community standard line Bd21.

Thole V, Worland B, Wright J, Bevan MW, Vain P.

Plant Biotechnol J. 2010 Aug;8(6):734-47. doi: 10.1111/j.1467-7652.2010.00518.x. Epub 2010 Mar 30.

24.

Brachypodium distachyon genomics for sustainable food and fuel production.

Bevan MW, Garvin DF, Vogel JP.

Curr Opin Biotechnol. 2010 Apr;21(2):211-7. doi: 10.1016/j.copbio.2010.03.006. Epub 2010 Mar 31.

PMID:
20362425
25.

Probing the reproducibility of leaf growth and molecular phenotypes: a comparison of three Arabidopsis accessions cultivated in ten laboratories.

Massonnet C, Vile D, Fabre J, Hannah MA, Caldana C, Lisec J, Beemster GT, Meyer RC, Messerli G, Gronlund JT, Perkovic J, Wigmore E, May S, Bevan MW, Meyer C, Rubio-Díaz S, Weigel D, Micol JL, Buchanan-Wollaston V, Fiorani F, Walsh S, Rinn B, Gruissem W, Hilson P, Hennig L, Willmitzer L, Granier C.

Plant Physiol. 2010 Apr;152(4):2142-57. doi: 10.1104/pp.109.148338. Epub 2010 Mar 3.

26.

An SSR-based genetic linkage map of the model grass Brachypodium distachyon.

Garvin DF, McKenzie N, Vogel JP, Mockler TC, Blankenheim ZJ, Wright J, Cheema JJ, Dicks J, Huo N, Hayden DM, Gu Y, Tobias C, Chang JH, Chu A, Trick M, Michael TP, Bevan MW, Snape JW.

Genome. 2010 Jan;53(1):1-13. doi: 10.1139/g09-079.

PMID:
20130744
27.

Rapid identification of the three homoeologues of the wheat dwarfing gene Rht using a novel PCR-based screen of three-dimensional BAC pools.

Febrer M, Wilhelm E, Al-Kaff N, Wright J, Powell W, Bevan MW, Boulton MI.

Genome. 2009 Dec;52(12):993-1000. doi: 10.1139/G09-073.

PMID:
19953127
28.

A protocol for efficiently retrieving and characterizing flanking sequence tags (FSTs) in Brachypodium distachyon T-DNA insertional mutants.

Thole V, Alves SC, Worland B, Bevan MW, Vain P.

Nat Protoc. 2009;4(5):650-61. doi: 10.1038/nprot.2009.32.

PMID:
19360020
29.

A protocol for Agrobacterium-mediated transformation of Brachypodium distachyon community standard line Bd21.

Alves SC, Worland B, Thole V, Snape JW, Bevan MW, Vain P.

Nat Protoc. 2009;4(5):638-49. doi: 10.1038/nprot.2009.30.

PMID:
19360019
30.

Arabidopsis reactome: a foundation knowledgebase for plant systems biology.

Tsesmetzis N, Couchman M, Higgins J, Smith A, Doonan JH, Seifert GJ, Schmidt EE, Vastrik I, Birney E, Wu G, D'Eustachio P, Stein LD, Morris RJ, Bevan MW, Walsh SV.

Plant Cell. 2008 Jun;20(6):1426-36. doi: 10.1105/tpc.108.057976. Epub 2008 Jun 30. No abstract available.

31.

Control of final seed and organ size by the DA1 gene family in Arabidopsis thaliana.

Li Y, Zheng L, Corke F, Smith C, Bevan MW.

Genes Dev. 2008 May 15;22(10):1331-6. doi: 10.1101/gad.463608.

32.

Agrobacterium-mediated transformation of the temperate grass Brachypodium distachyon (genotype Bd21) for T-DNA insertional mutagenesis.

Vain P, Worland B, Thole V, McKenzie N, Alves SC, Opanowicz M, Fish LJ, Bevan MW, Snape JW.

Plant Biotechnol J. 2008 Apr;6(3):236-45. Epub 2007 Nov 12. Erratum in: Plant Biotechnol J. 2008 Dec;6(9):941.

33.

Signaling from an altered cell wall to the nucleus mediates sugar-responsive growth and development in Arabidopsis thaliana.

Li Y, Smith C, Corke F, Zheng L, Merali Z, Ryden P, Derbyshire P, Waldron K, Bevan MW.

Plant Cell. 2007 Aug;19(8):2500-15. Epub 2007 Aug 10.

34.

The redox imbalanced mutants of Arabidopsis differentiate signaling pathways for redox regulation of chloroplast antioxidant enzymes.

Heiber I, Ströher E, Raatz B, Busse I, Kahmann U, Bevan MW, Dietz KJ, Baier M.

Plant Physiol. 2007 Apr;143(4):1774-88. Epub 2007 Mar 2.

35.

Sugar and ABA response pathways and the control of gene expression.

Rook F, Hadingham SA, Li Y, Bevan MW.

Plant Cell Environ. 2006 Mar;29(3):426-34. Review.

36.

Investing in green and white biotech.

Bevan MW, Franssen MC.

Nat Biotechnol. 2006 Jul;24(7):765-7.

PMID:
16841055
37.
38.

Establishing glucose- and ABA-regulated transcription networks in Arabidopsis by microarray analysis and promoter classification using a Relevance Vector Machine.

Li Y, Lee KK, Walsh S, Smith C, Hadingham S, Sorefan K, Cawley G, Bevan MW.

Genome Res. 2006 Mar;16(3):414-27. Epub 2006 Jan 19.

39.

Arabidopsis NAP and PIR regulate actin-based cell morphogenesis and multiple developmental processes.

Li Y, Sorefan K, Hemmann G, Bevan MW.

Plant Physiol. 2004 Nov;136(3):3616-27. Epub 2004 Oct 29.

40.

PLANT TRANSCRIPTION FACTOR STUDIES.

Schwechheimer C, Zourelidou M, Bevan MW.

Annu Rev Plant Physiol Plant Mol Biol. 1998 Jun;49:127-150.

PMID:
15012230
41.

Characterisation of Pt MYB1, an R2R3-MYB from pine xylem.

Patzlaff A, Newman LJ, Dubos C, Whetten RW, Smith C, McInnis S, Bevan MW, Sederoff RR, Campbell MM.

Plant Mol Biol. 2003 Nov;53(4):597-608.

PMID:
15010621
42.

Characterization of mutants in Arabidopsis showing increased sugar-specific gene expression, growth, and developmental responses.

Baier M, Hemmann G, Holman R, Corke F, Card R, Smith C, Rook F, Bevan MW.

Plant Physiol. 2004 Jan;134(1):81-91. Epub 2003 Dec 18.

43.

Characterisation of a pine MYB that regulates lignification.

Patzlaff A, McInnis S, Courtenay A, Surman C, Newman LJ, Smith C, Bevan MW, Mansfield S, Whetten RW, Sederoff RR, Campbell MM.

Plant J. 2003 Dec;36(6):743-54.

44.

Genetic approaches to understanding sugar-response pathways.

Rook F, Bevan MW.

J Exp Bot. 2003 Jan;54(382):495-501. Review.

PMID:
12508060
45.
46.

MYB61 is required for mucilage deposition and extrusion in the Arabidopsis seed coat.

Penfield S, Meissner RC, Shoue DA, Carpita NC, Bevan MW.

Plant Cell. 2001 Dec;13(12):2777-91.

47.
48.

Conservation of microstructure between a sequenced region of the genome of rice and multiple segments of the genome of Arabidopsis thaliana.

Mayer K, Murphy G, Tarchini R, Wambutt R, Volckaert G, Pohl T, Düsterhöft A, Stiekema W, Entian KD, Terryn N, Lemcke K, Haase D, Hall CR, van Dodeweerd AM, Tingey SV, Mewes HW, Bevan MW, Bancroft I.

Genome Res. 2001 Jul;11(7):1167-74.

49.
50.

Identification and analysis of homoeologous segments of the genomes of rice and Arabidopsis thaliana.

van Dodeweerd AM, Hall CR, Bent EG, Johnson SJ, Bevan MW, Bancroft I.

Genome. 1999 Oct;42(5):887-92.

PMID:
10584310

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