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Items: 29

1.

Collective clog control: Optimizing traffic flow in confined biological and robophysical excavation.

Aguilar J, Monaenkova D, Linevich V, Savoie W, Dutta B, Kuan HS, Betterton MD, Goodisman MAD, Goldman DI.

Science. 2018 Aug 17;361(6403):672-677. doi: 10.1126/science.aan3891.

PMID:
30115804
2.

Effects of soft interactions and bound mobility on diffusion in crowded environments: a model of sticky and slippery obstacles.

Stefferson MW, Norris SL, Vernerey FJ, Betterton MD, Hough LE.

Phys Biol. 2017 Jun 29;14(4):045008. doi: 10.1088/1478-3975/aa7869.

3.

Kinesin-5-independent mitotic spindle assembly requires the antiparallel microtubule crosslinker Ase1 in fission yeast.

Rincon SA, Lamson A, Blackwell R, Syrovatkina V, Fraisier V, Paoletti A, Betterton MD, Tran PT.

Nat Commun. 2017 May 17;8:15286. doi: 10.1038/ncomms15286.

4.

Physical determinants of bipolar mitotic spindle assembly and stability in fission yeast.

Blackwell R, Edelmaier C, Sweezy-Schindler O, Lamson A, Gergely ZR, O'Toole E, Crapo A, Hough LE, McIntosh JR, Glaser MA, Betterton MD.

Sci Adv. 2017 Jan 20;3(1):e1601603. doi: 10.1126/sciadv.1601603. eCollection 2017 Jan.

5.

Kinesin-8 effects on mitotic microtubule dynamics contribute to spindle function in fission yeast.

Gergely ZR, Crapo A, Hough LE, McIntosh JR, Betterton MD.

Mol Biol Cell. 2016 Nov 7;27(22):3490-3514. Epub 2016 May 4.

6.

Contributions of Microtubule Dynamic Instability and Rotational Diffusion to Kinetochore Capture.

Blackwell R, Sweezy-Schindler O, Edelmaier C, Gergely ZR, Flynn PJ, Montes S, Crapo A, Doostan A, McIntosh JR, Glaser MA, Betterton MD.

Biophys J. 2017 Feb 7;112(3):552-563. doi: 10.1016/j.bpj.2016.09.006. Epub 2016 Sep 28.

7.

Phase-plane analysis of the totally asymmetric simple exclusion process with binding kinetics and switching between antiparallel lanes.

Kuan HS, Betterton MD.

Phys Rev E. 2016 Aug;94(2-1):022419. doi: 10.1103/PhysRevE.94.022419. Epub 2016 Aug 29.

8.

Motor Protein Accumulation on Antiparallel Microtubule Overlaps.

Kuan HS, Betterton MD.

Biophys J. 2016 May 10;110(9):2034-43. doi: 10.1016/j.bpj.2016.03.039.

9.

Multiscale modeling and simulation of microtubule-motor-protein assemblies.

Gao T, Blackwell R, Glaser MA, Betterton MD, Shelley MJ.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015;92(6):062709. doi: 10.1103/PhysRevE.92.062709. Epub 2015 Dec 10.

10.

Hysteresis, reentrance, and glassy dynamics in systems of self-propelled rods.

Kuan HS, Blackwell R, Hough LE, Glaser MA, Betterton MD.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015;92(6):060501. doi: 10.1103/PhysRevE.92.060501. Epub 2015 Dec 31.

11.

Microscopic origins of anisotropic active stress in motor-driven nematic liquid crystals.

Blackwell R, Sweezy-Schindler O, Baldwin C, Hough LE, Glaser MA, Betterton MD.

Soft Matter. 2016 Mar 14;12(10):2676-87. doi: 10.1039/c5sm02506k. Epub 2016 Jan 8.

12.

Multiscale polar theory of microtubule and motor-protein assemblies.

Gao T, Blackwell R, Glaser MA, Betterton MD, Shelley MJ.

Phys Rev Lett. 2015 Jan 30;114(4):048101. Epub 2015 Jan 27.

13.

Regulation of chromosome speeds in mitosis.

Betterton MD, McIntosh JR.

Cell Mol Bioeng. 2013 Dec;6(4):418-430.

14.

Biophysics of filament length regulation by molecular motors.

Kuan HS, Betterton MD.

Phys Biol. 2013 Jun;10(3):036004. doi: 10.1088/1478-3975/10/3/036004. Epub 2013 Apr 16.

15.

Microtubule depolymerization by the Kinesin-8 motor Kip3p: a mathematical model.

Hough LE, Schwabe A, Glaser MA, McIntosh JR, Betterton MD.

Biophys J. 2009 Apr 22;96(8):3050-64. doi: 10.1016/j.bpj.2009.01.017.

16.

Activating and inhibiting connections in biological network dynamics.

McDonald D, Waterbury L, Knight R, Betterton MD.

Biol Direct. 2008 Dec 4;3:49. doi: 10.1186/1745-6150-3-49.

17.

Two-state model for helicase translocation and unwinding of nucleic acids.

Garai A, Chowdhury D, Betterton MD.

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Jun;77(6 Pt 1):061910. Epub 2008 Jun 13.

PMID:
18643303
18.

Elasticity of short DNA molecules: theory and experiment for contour lengths of 0.6-7 microm.

Seol Y, Li J, Nelson PC, Perkins TT, Betterton MD.

Biophys J. 2007 Dec 15;93(12):4360-73. Epub 2007 Aug 31.

19.

TFIIA changes the conformation of the DNA in TBP/TATA complexes and increases their kinetic stability.

Hieb AR, Halsey WA, Betterton MD, Perkins TT, Kugel JF, Goodrich JA.

J Mol Biol. 2007 Sep 21;372(3):619-32. Epub 2007 Jun 29.

PMID:
17681538
20.

Multiple pattern matching: a Markov chain approach.

Lladser ME, Betterton MD, Knight R.

J Math Biol. 2008 Jan;56(1-2):51-92. Epub 2007 Aug 1.

PMID:
17668213
21.

Systems theory of Smad signalling.

Clarke DC, Betterton MD, Liu X.

Syst Biol (Stevenage). 2006 Nov;153(6):412-24.

PMID:
17186703
22.

Using the nucleotide substitution rate matrix to detect horizontal gene transfer.

Hamady M, Betterton MD, Knight R.

BMC Bioinformatics. 2006 Oct 26;7:476.

23.

Controlled irradiative formation of penitentes.

Bergeron V, Berger C, Betterton MD.

Phys Rev Lett. 2006 Mar 10;96(9):098502. Epub 2006 Mar 7.

PMID:
16606324
24.

Incorporating expression data in metabolic modeling: a case study of lactate dehydrogenase.

Downer J, Sevinsky JR, Ahn NG, Resing KA, Betterton MD.

J Theor Biol. 2006 Jun 7;240(3):464-74. Epub 2005 Dec 2.

PMID:
16325864
25.

Velocity and processivity of helicase unwinding of double-stranded nucleic acids.

Betterton MD, Jülicher F.

J Phys Condens Matter. 2005 Nov 30;17(47):S3851-69. doi: 10.1088/0953-8984/17/47/015. Epub 2005 Nov 4.

PMID:
21690729
26.

Opening of nucleic-acid double strands by helicases: active versus passive opening.

Betterton MD, Jülicher F.

Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Jan;71(1 Pt 1):011904. Epub 2005 Jan 19. Erratum in: Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Aug;72(2 Pt 2):029906.

PMID:
15697627
27.

A motor that makes its own track: helicase unwinding of DNA.

Betterton MD, Jülicher F.

Phys Rev Lett. 2003 Dec 19;91(25):258103. Epub 2003 Dec 18.

PMID:
14754162
28.

Collapsing bacterial cylinders.

Betterton MD, Brenner MP.

Phys Rev E Stat Nonlin Soft Matter Phys. 2001 Dec;64(6 Pt 1):061904. Epub 2001 Nov 13.

PMID:
11736207
29.

Theory of structure formation in snowfields motivated by penitentes, suncups, and dirt cones.

Betterton MD.

Phys Rev E Stat Nonlin Soft Matter Phys. 2001 May;63(5 Pt 2):056129. Epub 2001 Apr 26.

PMID:
11414983

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