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Items: 1 to 50 of 92

1.

Standardization of the preanalytical phase of DNA extraction from fixed tissue for next-generation sequencing analyses.

Kofanova O, Bellora C, Garcia Frasquilho S, Antunes L, Hamot G, Mathay C, Mommaerts K, Muller A, DeWitt B, Betsou F.

N Biotechnol. 2019 Aug 6. pii: S1871-6784(19)30046-9. doi: 10.1016/j.nbt.2019.07.005. [Epub ahead of print]

2.

Quality Assessment of the Preanalytical Workflow in Liquid Biobanking: Taurine as a Serum-Specific Quality Indicator for Preanalytical Process Variations.

Schwarz N, Knutti N, Rose M, Neugebauer S, Geiger J, Jahns R, Klopp N, Illig T, Mathay C, Betsou F, Scherag A, Kiehntopf M.

Biopreserv Biobank. 2019 Jul 24. doi: 10.1089/bio.2019.0004. [Epub ahead of print]

PMID:
31339743
3.

Multicentric Evaluation of Circulating Plasma MicroRNA Extraction Technologies for the Development of Clinically Feasible Reverse Transcription Quantitative PCR and Next-Generation Sequencing Analytical Work Flows.

Kloten V, Neumann MHD, Di Pasquale F, Sprenger-Haussels M, Shaffer JM, Schlumpberger M, Herdean A, Betsou F, Ammerlaan W, Af Hällström T, Serkkola E, Forsman T, Lianidou E, Sjöback R, Kubista M, Bender S, Lampignano R, Krahn T, Schlange T; CANCER-ID consortium.

Clin Chem. 2019 Jun 24. pii: clinchem.2019.303271. doi: 10.1373/clinchem.2019.303271. [Epub ahead of print]

PMID:
31235535
4.

Preanalytical robustness of blood collection tubes with RNA stabilizers.

Stellino C, Hamot G, Bellora C, Trouet J, Betsou F.

Clin Chem Lab Med. 2019 May 21. pii: /j/cclm.ahead-of-print/cclm-2019-0170/cclm-2019-0170.xml. doi: 10.1515/cclm-2019-0170. [Epub ahead of print]

PMID:
31112504
5.

Catalyzing Transcriptomics Research in Cardiovascular Disease: The CardioRNA COST Action CA17129.

Gomes CPC, Ágg B, Andova A, Arslan S, Baker A, Barteková M, Beis D, Betsou F, Wettinger SB, Bugarski B, Condorelli G, Silva GJJD, Danilin S, de Gonzalo-Calvo D, Buil A, Carmo-Fonseca M, Enguita FJ, Felekkis K, Ferdinandy P, Gyöngyösi M, Hackl M, Karaduzovic-Hadziabdic K, Hellemans J, Heymans S, Hlavackova M, Hoydal MA, Jankovic A, Jusic A, Kardassis D, Kerkelä R, Kuster GM, Lakkisto P, Leszek P, Lustrek M, Maegdefessel L, Martelli F, Novella S, O'Brien T, Papaneophytou C, Pedrazzini T, Pinet F, Popescu O, Potočnjak I, Robinson E, Sasson S, Scholz M, Simionescu M, Stoll M, Varga ZV, Vinciguerra M, Xuereb A, Yilmaz MB, Emanueli C, Devaux Y, on behalf of the EU-CardioRNA COST Action (CA17129).

Noncoding RNA. 2019 Mar 29;5(2). pii: E31. doi: 10.3390/ncrna5020031.

6.

Preanalytical challenges - time for solutions.

Lippi G, Betsou F, Cadamuro J, Cornes M, Fleischhacker M, Fruekilde P, Neumaier M, Nybo M, Padoan A, Plebani M, Sciacovelli L, Vermeersch P, von Meyer A, Simundic AM; Working Group for Preanalytical Phase (WG-PRE), European Federation of Clinical Chemistry and Laboratory Medicine (EFLM).

Clin Chem Lab Med. 2019 Jun 26;57(7):974-981. doi: 10.1515/cclm-2018-1334.

7.

Cold Ischemia Score: An mRNA Assay for the Detection of Extended Cold Ischemia in Formalin-Fixed, Paraffin-Embedded Tissue.

Mathieson W, Mommaerts K, Trouet JM, Mathay C, Guan P, Carithers LJ, Rohrer D, Valley DR, Blanski A, Jewell S, Moore HM, Betsou F.

J Histochem Cytochem. 2019 Mar;67(3):159-168. doi: 10.1369/0022155418819967. Epub 2018 Dec 18.

PMID:
30562131
8.

IL8 and EDEM3 gene expression ratio indicates peripheral blood mononuclear cell (PBMC) quality.

Kofanova O, Bellora C, Quesada RA, Bulla A, Panadero-Fajardo S, Keipes M, Shea K, Stone M, Lescuyer P, Betsou F.

J Immunol Methods. 2019 Feb;465:13-19. doi: 10.1016/j.jim.2018.11.012. Epub 2018 Nov 26.

9.

The Luxembourg Parkinson's Study: A Comprehensive Approach for Stratification and Early Diagnosis.

Hipp G, Vaillant M, Diederich NJ, Roomp K, Satagopam VP, Banda P, Sandt E, Mommaerts K, Schmitz SK, Longhino L, Schweicher A, Hanff AM, Nicolai B, Kolber P, Reiter D, Pavelka L, Binck S, Pauly C, Geffers L, Betsou F, Gantenbein M, Klucken J, Gasser T, Hu MT, Balling R, Krüger R.

Front Aging Neurosci. 2018 Oct 29;10:326. doi: 10.3389/fnagi.2018.00326. eCollection 2018.

10.

Does vacuum centrifugal concentration reduce yield or quality of nucleic acids extracted from FFPE biospecimens?

Sánchez I, Betsou F, Mathieson W.

Anal Biochem. 2019 Feb 1;566:16-19. doi: 10.1016/j.ab.2018.10.020. Epub 2018 Oct 19.

PMID:
30343041
11.

Small Nucleolar RNA Score: An Assay to Detect Formalin-Overfixed Tissue.

Ammerlaan W, Trouet J, Sachs MC, Guan P, Carithers L, Lambert P, Frasquilho S, Antunes L, Kofanova O, Rohrer D, Valley DR, Blanski A, Jewell S, Moore H, Betsou F.

Biopreserv Biobank. 2018 Sep 19. doi: 10.1089/bio.2018.0042. [Epub ahead of print]

12.

Interlaboratory proficiency processing scheme in CSF aliquoting: implementation and assessment based on biomarkers of Alzheimer's disease.

Lewczuk P, Gaignaux A, Kofanova O, Ermann N, Betsou F, Brandner S, Mroczko B, Blennow K, Strapagiel D, Paciotti S, Vogelgsang J, Roehrl MH, Mendoza S, Kornhuber J, Teunissen C.

Alzheimers Res Ther. 2018 Aug 28;10(1):87. doi: 10.1186/s13195-018-0418-3.

13.

RNA and microRNA Stability in PAXgene-Fixed Paraffin-Embedded Tissue Blocks After Seven Years' Storage.

Sanchez I, Betsou F, Culot B, Frasquilho S, McKay SC, Pericleous S, Smith C, Thomas G, Mathieson W.

Am J Clin Pathol. 2018 Apr 25;149(6):536-547. doi: 10.1093/ajcp/aqy026.

14.

IL8 and IL16 levels indicate serum and plasma quality.

Kofanova O, Henry E, Aguilar Quesada R, Bulla A, Navarro Linares H, Lescuyer P, Shea K, Stone M, Tybring G, Bellora C, Betsou F.

Clin Chem Lab Med. 2018 Jun 27;56(7):1054-1062. doi: 10.1515/cclm-2017-1047.

15.

Biospecimens and Biobanking in Global Health.

Mendy M, Lawlor RT, van Kappel AL, Riegman PHJ, Betsou F, Cohen OD, Henderson MK.

Clin Lab Med. 2018 Mar;38(1):183-207. doi: 10.1016/j.cll.2017.10.015. Epub 2017 Dec 24. Review.

PMID:
29412882
16.

Standard PREanalytical Code version 3.0.

Betsou F, Bilbao R, Case J, Chuaqui R, Clements JA, De Souza Y, De Wilde A, Geiger J, Grizzle W, Guadagni F, Gunter E, Heil S, Kiehntopf M, Koppandi I, Lehmann S, Linsen L, Mackenzie-Dodds J, Aguilar Quesada R, Tebbakha R, Selander T, Shea K, Sobel M, Somiari S, Spyropoulos D, Stone M, Tybring G, Valyi-Nagy K, Wadhwa L.

Biopreserv Biobank. 2018 Jan 29. doi: 10.1089/bio.2017.0109. [Epub ahead of print] No abstract available.

PMID:
29377712
17.

The ISBER Self-Assessment Tool Indicates Main Pathways for Improvement in Biobanks and Supports International Standardization.

Betsou F.

Biopreserv Biobank. 2018 Feb;16(1):7-8. doi: 10.1089/bio.2017.0121. Epub 2018 Jan 23. No abstract available.

PMID:
29359960
18.

Distinct metabolomic signature in cerebrospinal fluid in early parkinson's disease.

Trezzi JP, Galozzi S, Jaeger C, Barkovits K, Brockmann K, Maetzler W, Berg D, Marcus K, Betsou F, Hiller K, Mollenhauer B.

Mov Disord. 2017 Oct;32(10):1401-1408. doi: 10.1002/mds.27132. Epub 2017 Aug 26.

PMID:
28843022
19.

Preanalytical Stability of Antibodies to Pathogenic Antigens.

Hodgkinson VS, Egger S, Betsou F, Waterboer T, Pawlita M, Michel A, Baker MS, Banks E, Sitas F.

Cancer Epidemiol Biomarkers Prev. 2017 Aug;26(8):1337-1344. doi: 10.1158/1055-9965.EPI-17-0170. Epub 2017 May 8.

20.

A Biospecimen Proficiency Testing Program for Biobank Accreditation: Four Years of Experience.

Gaignaux A, Ashton G, Coppola D, De Souza Y, De Wilde A, Eliason J, Grizzle W, Guadagni F, Gunter E, Koppandi I, Shea K, Shi T, Stein JA, Sobel ME, Tybring G, Van den Eynden G, Betsou F.

Biopreserv Biobank. 2016 Oct;14(5):429-439. Epub 2016 May 19.

21.

Intraindividual Temporal miRNA Variability in Serum, Plasma, and White Blood Cell Subpopulations.

Ammerlaan W, Betsou F.

Biopreserv Biobank. 2016 Oct;14(5):390-397. Epub 2016 Apr 20.

PMID:
27096687
22.

Assays for Qualification and Quality Stratification of Clinical Biospecimens Used in Research: A Technical Report from the ISBER Biospecimen Science Working Group.

Betsou F, Bulla A, Cho SY, Clements J, Chuaqui R, Coppola D, De Souza Y, De Wilde A, Grizzle W, Guadagni F, Gunter E, Heil S, Hodgkinson V, Kessler J, Kiehntopf M, Kim HS, Koppandi I, Shea K, Singh R, Sobel M, Somiari S, Spyropoulos D, Stone M, Tybring G, Valyi-Nagy K, Van den Eynden G, Wadhwa L.

Biopreserv Biobank. 2016 Oct;14(5):398-409. Epub 2016 Apr 5.

23.

Method Validation for Extraction of Nucleic Acids from Peripheral Whole Blood.

Mathay C, Hamot G, Henry E, Mommaerts K, Thorlaksdottir A, Trouet J, Betsou F.

Biopreserv Biobank. 2016 Dec;14(6):520-529. Epub 2016 Aug 22.

PMID:
27548617
24.

A Critical Evaluation of the PAXgene Tissue Fixation System:  Morphology, Immunohistochemistry, Molecular Biology, and Proteomics.

Mathieson W, Marcon N, Antunes L, Ashford DA, Betsou F, Frasquilho SG, Kofanova OA, McKay SC, Pericleous S, Smith C, Unger KM, Zeller C, Thomas GA.

Am J Clin Pathol. 2016 Jul;146(1):25-40. doi: 10.1093/ajcp/aqw023.

PMID:
27402607
25.

The effect of long-term -80°C storage of thyroid biospecimens on RNA quality and ensuring fitness for purpose.

Mathieson W, Betsou F, Myshunina T, Pushkarev V, Pushkarev V, Shinkarkina A, Voskoboynyk L, Thomas GA.

J Clin Pathol. 2016 Dec;69(12):1105-1108. doi: 10.1136/jclinpath-2016-203697. Epub 2016 May 27.

26.

LacaScore: a novel plasma sample quality control tool based on ascorbic acid and lactic acid levels.

Trezzi JP, Bulla A, Bellora C, Rose M, Lescuyer P, Kiehntopf M, Hiller K, Betsou F.

Metabolomics. 2016;12:96. Epub 2016 Apr 27.

27.

Comparison of Different Matrices as Potential Quality Control Samples for Neurochemical Dementia Diagnostics.

Lelental N, Brandner S, Kofanova O, Blennow K, Zetterberg H, Andreasson U, Engelborghs S, Mroczko B, Gabryelewicz T, Teunissen C, Mollenhauer B, Parnetti L, Chiasserini D, Molinuevo JL, Perret-Liaudet A, Verbeek MM, Andreasen N, Brosseron F, Bahl JM, Herukka SK, Hausner L, Frölich L, Labonte A, Poirier J, Miller AM, Zilka N, Kovacech B, Urbani A, Suardi S, Oliveira C, Baldeiras I, Dubois B, Rot U, Lehmann S, Skinningsrud A, Betsou F, Wiltfang J, Gkatzima O, Winblad B, Buchfelder M, Kornhuber J, Lewczuk P.

J Alzheimers Dis. 2016 Mar 1;52(1):51-64. doi: 10.3233/JAD-150883.

PMID:
26967210
28.

Preservation of Biospecimens at Ambient Temperature: Special Focus on Nucleic Acids and Opportunities for the Biobanking Community.

Muller R, Betsou F, Barnes MG, Harding K, Bonnet J, Kofanova O, Crowe JH; International Society for Biological and Environmental Repositories (ISBER) Biospecimen Science Working Group.

Biopreserv Biobank. 2016 Apr;14(2):89-98. doi: 10.1089/bio.2015.0022. Epub 2016 Feb 17. Review.

PMID:
26886348
29.

Trends in Biobanking: A Bibliometric Overview.

Astrin JJ, Betsou F.

Biopreserv Biobank. 2016 Feb;14(1):65-74. doi: 10.1089/bio.2015.0019. Epub 2016 Feb 1. Review.

PMID:
26828766
30.

Blood DNA Yield but Not Integrity or Methylation Is Impacted After Long-Term Storage.

Bulla A, De Witt B, Ammerlaan W, Betsou F, Lescuyer P.

Biopreserv Biobank. 2016 Feb;14(1):29-38. doi: 10.1089/bio.2015.0045. Epub 2016 Jan 26.

PMID:
26812548
31.

An Independent Evaluation of the CryoXtract Instruments' CXT350 Frozen Sample Aliquotter Using Tissue and Fecal Biospecimens.

Mathieson W, Sanchez I, Mommaerts K, Frasquilho S, Betsou F.

Biopreserv Biobank. 2016 Feb;14(1):2-8. doi: 10.1089/bio.2015.0016. Epub 2016 Jan 26.

PMID:
26812438
32.

The Central Biobank and Virtual Biobank of BIOMARKAPD: A Resource for Studies on Neurodegenerative Diseases.

Reijs BL, Teunissen CE, Goncharenko N, Betsou F, Blennow K, Baldeiras I, Brosseron F, Cavedo E, Fladby T, Froelich L, Gabryelewicz T, Gurvit H, Kapaki E, Koson P, Kulic L, Lehmann S, Lewczuk P, Lleó A, Maetzler W, de Mendonça A, Miller AM, Molinuevo JL, Mollenhauer B, Parnetti L, Rot U, Schneider A, Simonsen AH, Tagliavini F, Tsolaki M, Verbeek MM, Verhey FR, Zboch M, Winblad B, Scheltens P, Zetterberg H, Visser PJ.

Front Neurol. 2015 Oct 15;6:216. doi: 10.3389/fneur.2015.00216. eCollection 2015.

33.

How Severely Is DNA Quantification Hampered by RNA Co-extraction?

Sanchez I, Remm M, Frasquilho S, Betsou F, Mathieson W.

Biopreserv Biobank. 2015 Oct;13(5):320-4. doi: 10.1089/bio.2015.0008. Epub 2015 Sep 29.

PMID:
26418169
34.

Tube Polypropylene: A Neglected Critical Parameter for Protein Adsorption During Biospecimen Storage.

Kofanova OA, Mommaerts K, Betsou F.

Biopreserv Biobank. 2015 Aug;13(4):296-8. doi: 10.1089/bio.2014.0082. Epub 2015 Jul 17.

PMID:
26186497
35.

Ultraviolet C radiation influences the robustness of RNA integrity measurement.

Unger C, Kofanova O, Sokolowska K, Lehmann D, Betsou F.

Electrophoresis. 2015 Sep;36(17):2072-81. doi: 10.1002/elps.201500082. Epub 2015 Jul 14.

PMID:
25998866
36.

Method optimization for fecal sample collection and fecal DNA extraction.

Mathay C, Hamot G, Henry E, Georges L, Bellora C, Lebrun L, de Witt B, Ammerlaan W, Buschart A, Wilmes P, Betsou F.

Biopreserv Biobank. 2015 Apr;13(2):79-93. doi: 10.1089/bio.2014.0031.

PMID:
25880472
37.

Biospecimen processing method validation.

Betsou F.

Biopreserv Biobank. 2015 Apr;13(2):69. doi: 10.1089/bio.2015.1321. No abstract available.

PMID:
25880470
38.

Replacing β-mercaptoethanol in RNA extractions.

Mommaerts K, Sanchez I, Betsou F, Mathieson W.

Anal Biochem. 2015 Jun 15;479:51-3. doi: 10.1016/j.ab.2015.03.027. Epub 2015 Apr 2.

PMID:
25841674
39.

Method validation for automated isolation of viable peripheral blood mononuclear cells.

Hamot G, Ammerlaan W, Mathay C, Kofanova O, Betsou F.

Biopreserv Biobank. 2015 Jun;13(3):152-63. doi: 10.1089/bio.2014.0054. Epub 2015 Apr 1.

PMID:
25830476
40.

Method validation for preparing urine samples for downstream proteomic and metabolomic applications.

Ammerlaan W, Trezzi JP, Mathay C, Hiller K, Betsou F.

Biopreserv Biobank. 2014 Oct;12(5):351-7. doi: 10.1089/bio.2014.0013. Epub 2014 Oct 7.

PMID:
25289566
41.

Method validation for preparing serum and plasma samples from human blood for downstream proteomic, metabolomic, and circulating nucleic acid-based applications.

Ammerlaan W, Trezzi JP, Lescuyer P, Mathay C, Hiller K, Betsou F.

Biopreserv Biobank. 2014 Aug;12(4):269-80. doi: 10.1089/bio.2014.0003. Epub 2014 Jul 30.

PMID:
25075813
42.

Viable mononuclear cell stability study for implementation in a proficiency testing program: impact of shipment conditions.

Kofanova OA, Davis K, Glazer B, De Souza Y, Kessler J, Betsou F; ISBER Biospecimen Science Working Group.

Biopreserv Biobank. 2014 Jun;12(3):206-16. doi: 10.1089/bio.2013.0090.

43.

Combined effect of tissue stabilization and protein extraction methods on phosphoprotein analysis.

Kofanova OA, Fack F, Niclou SP, Betsou F.

Biopreserv Biobank. 2013 Jun;11(3):161-5. doi: 10.1089/bio.2013.0008. Epub 2013 May 29.

PMID:
24850093
44.

The ISBER Biorepository proficiency testing program: two successful years already, and new features to come.

Betsou F, Sobel ME.

Biopreserv Biobank. 2013 Aug;11(4):255-6. doi: 10.1089/bio.2013.1143. No abstract available.

PMID:
24845594
45.

Lithostatine concentration is not useful for assessing the preanalytical variations in biobanked urine samples.

Kofanova OA, Betsou F.

Biopreserv Biobank. 2013 Oct;11(5):316-8. doi: 10.1089/bio.2013.0031.

PMID:
24835263
46.

Is there a protocol for using the SPREC?

Nussbeck SY, Benson EE, Betsou F, Guadagni F, Lehmann S, Umbach N.

Biopreserv Biobank. 2013 Oct;11(5):260-6. doi: 10.1089/bio.2013.1152. No abstract available.

PMID:
24835256
47.

DNA fingerprinting: a quality control case study for human biospecimen authentication.

Kofanova OA, Mathieson W, Thomas GA, Betsou F.

Biopreserv Biobank. 2014 Apr;12(2):151-3. doi: 10.1089/bio.2013.0063. Epub 2014 Feb 14.

48.

Clinical biospecimens: reference materials, certified for nominal properties?

Betsou F.

Biopreserv Biobank. 2014 Apr;12(2):113-20. doi: 10.1089/bio.2013.0086.

49.

Creation of a federated database of blood proteins: a powerful new tool for finding and characterizing biomarkers in serum.

Marshall J, Bowden P, Schmit JC, Betsou F.

Clin Proteomics. 2014 Jan 29;11(1):3. doi: 10.1186/1559-0275-11-3.

50.

Identification of evidence-based biospecimen quality-control tools: a report of the International Society for Biological and Environmental Repositories (ISBER) Biospecimen Science Working Group.

Betsou F, Gunter E, Clements J, DeSouza Y, Goddard KA, Guadagni F, Yan W, Skubitz A, Somiari S, Yeadon T, Chuaqui R.

J Mol Diagn. 2013 Jan;15(1):3-16. doi: 10.1016/j.jmoldx.2012.06.008. Epub 2012 Nov 27. Review.

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