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Items: 1 to 50 of 472

1.

IMPROVING THE PERFORMANCE OF THE AMBER RNA FORCE FIELD BY TUNING THE HYDROGEN-BONDING INTERACTIONS.

Kührová P, Mlynsky V, Zgarbova M, Krepl M, Bussi G, Best RB, Otyepka M, Sponer J, Banáš P.

J Chem Theory Comput. 2019 Mar 21. doi: 10.1021/acs.jctc.8b00955. [Epub ahead of print]

PMID:
30896943
2.

Rapid Divergence of Predator Functional Traits Affects Prey Composition in Aquatic Communities.

Schmid DW, McGee MD, Best RJ, Seehausen O, Matthews B.

Am Nat. 2019 Mar;193(3):331-345. doi: 10.1086/701784. Epub 2019 Jan 23.

PMID:
30794448
3.

The role of plasticity in the evolution of cryptic pigmentation in a freshwater isopod.

Lürig MD, Best RJ, Svitok M, Jokela J, Matthews B.

J Anim Ecol. 2019 Jan 21. doi: 10.1111/1365-2656.12950. [Epub ahead of print]

PMID:
30666639
4.

Patient re-contact after revision of genomic test results: points to consider-a statement of the American College of Medical Genetics and Genomics (ACMG).

David KL, Best RG, Brenman LM, Bush L, Deignan JL, Flannery D, Hoffman JD, Holm I, Miller DT, O'Leary J, Pyeritz RE; ACMG Social Ethical Legal Issues Committee.

Genet Med. 2018 Dec 22. doi: 10.1038/s41436-018-0391-z. [Epub ahead of print] No abstract available.

PMID:
30578420
5.

Functional impairment after successful surgical reconstruction for proximal hamstring avulsion.

Best R, Eberle J, Beck F, Beckmann J, Becker U.

Int Orthop. 2018 Dec 19. doi: 10.1007/s00264-018-4263-6. [Epub ahead of print]

PMID:
30565178
6.

TADOSS: computational estimation of tandem domain swap stability.

Lafita A, Tian P, Best RB, Bateman A.

Bioinformatics. 2018 Nov 30. doi: 10.1093/bioinformatics/bty974. [Epub ahead of print]

PMID:
30500878
7.

The shape of the bacterial ribosome exit tunnel affects cotranslational protein folding.

Kudva R, Tian P, Pardo-Avila F, Carroni M, Best RB, Bernstein HD, von Heijne G.

Elife. 2018 Nov 26;7. pii: e36326. doi: 10.7554/eLife.36326.

8.

Accurate Transfer Efficiencies, Distance Distributions, and Ensembles of Unfolded and Intrinsically Disordered Proteins From Single-Molecule FRET.

Holmstrom ED, Holla A, Zheng W, Nettels D, Best RB, Schuler B.

Methods Enzymol. 2018;611:287-325. doi: 10.1016/bs.mie.2018.09.030. Epub 2018 Nov 16.

PMID:
30471690
9.

Echocardiographic Assessment for the Detection of Cardiotoxicity Due to Vascular Endothelial Growth Factor Inhibitor Therapy in Metastatic Renal Cell and Colorectal Cancers.

Nhola LF, Abdelmoneim SS, Villarraga HR, Kohli M, Grothey A, Bordun KA, Cheung M, Best R, Cheung D, Huang R, Barros-Gomes S, Pitz M, Singal PK, Jassal DS, Mulvagh SL.

J Am Soc Echocardiogr. 2019 Feb;32(2):267-276. doi: 10.1016/j.echo.2018.09.019. Epub 2018 Nov 17.

PMID:
30459123
10.

Folding pathway of an Ig domain is conserved on and off the ribosome.

Tian P, Steward A, Kudva R, Su T, Shilling PJ, Nickson AA, Hollins JJ, Beckmann R, von Heijne G, Clarke J, Best RB.

Proc Natl Acad Sci U S A. 2018 Nov 27;115(48):E11284-E11293. doi: 10.1073/pnas.1810523115. Epub 2018 Nov 9.

11.

A small single-domain protein folds through the same pathway on and off the ribosome.

Guinn EJ, Tian P, Shin M, Best RB, Marqusee S.

Proc Natl Acad Sci U S A. 2018 Nov 27;115(48):12206-12211. doi: 10.1073/pnas.1810517115. Epub 2018 Nov 8.

PMID:
30409803
12.

Molecular Determinants of Aβ42 Adsorption to Amyloid Fibril Surfaces.

Bellaiche MMJ, Best RB.

J Phys Chem Lett. 2018 Nov 15;9(22):6437-6443. doi: 10.1021/acs.jpclett.8b02375. Epub 2018 Oct 29.

PMID:
30371082
13.

Genotypic variation in phenological plasticity: Reciprocal common gardens reveal adaptive responses to warmer springs but not to fall frost.

Cooper HF, Grady KC, Cowan JA, Best RJ, Allan GJ, Whitham TG.

Glob Chang Biol. 2019 Jan;25(1):187-200. doi: 10.1111/gcb.14494. Epub 2018 Nov 14.

PMID:
30346108
14.

Changes in Pain and Nutritional Intake Modulate Ultra-Running Performance: A Case Report.

Best R, Barwick B, Best A, Berger N, Harrison C, Wright M, Sparrow J.

Sports (Basel). 2018 Oct 4;6(4). pii: E111. doi: 10.3390/sports6040111.

15.

Origin of Internal Friction in Disordered Proteins Depends on Solvent Quality.

Zheng W, Hofmann H, Schuler B, Best RB.

J Phys Chem B. 2018 Oct 2. doi: 10.1021/acs.jpcb.8b07425. [Epub ahead of print]

PMID:
30277791
16.

Relation between single-molecule properties and phase behavior of intrinsically disordered proteins.

Dignon GL, Zheng W, Best RB, Kim YC, Mittal J.

Proc Natl Acad Sci U S A. 2018 Oct 2;115(40):9929-9934. doi: 10.1073/pnas.1804177115. Epub 2018 Sep 14.

PMID:
30217894
17.

Comment on "Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water".

Best RB, Zheng W, Borgia A, Buholzer K, Borgia MB, Hofmann H, Soranno A, Nettels D, Gast K, Grishaev A, Schuler B.

Science. 2018 Aug 31;361(6405). pii: eaar7101. doi: 10.1126/science.aar7101.

PMID:
30166459
18.

Instrumental Effects in the Dynamics of an Ultrafast Folding Protein under Mechanical Force.

De Sancho D, Schönfelder J, Best RB, Perez-Jimenez R, Muñoz V.

J Phys Chem B. 2018 Aug 21. doi: 10.1021/acs.jpcb.8b05975. [Epub ahead of print]

PMID:
30129367
19.

Assessing Feeding Preferences of a Consumer Guild: Partitioning Variation Among versus Within Species.

Rhoades OK, Best RJ, Stachowicz JJ.

Am Nat. 2018 Sep;192(3):287-300. doi: 10.1086/698325. Epub 2018 Jul 20.

PMID:
30125236
20.

Bias to (and away from) the extreme: Comparing two models of categorical perception effects.

Best RM, Goldstone RL.

J Exp Psychol Learn Mem Cogn. 2018 Jul 19. doi: 10.1037/xlm0000609. [Epub ahead of print]

PMID:
30024260
21.

The varied presentations of siderosis from retained intraocular foreign body.

Dowlut MS, Curragh DS, Napier M, Herron B, McIlwaine G, Best R, Chan W.

Clin Exp Optom. 2019 Jan;102(1):86-88. doi: 10.1111/cxo.12804. Epub 2018 Jun 20. No abstract available.

PMID:
29923333
22.

Topical and Ingested Cooling Methodologies for Endurance Exercise Performance in the Heat.

Best R, Payton S, Spears I, Riera F, Berger N.

Sports (Basel). 2018 Feb 2;6(1). pii: E11. doi: 10.3390/sports6010011. Review.

23.

Correction to Identification of Mutational Hot Spots for Substrate Diffusion: Application to Myoglobin.

De Sancho D, Kubas A, Wang PH, Blumberger J, Best RB.

J Chem Theory Comput. 2018 May 8;14(5):2822. doi: 10.1021/acs.jctc.8b00325. Epub 2018 Apr 30. No abstract available.

24.

Editorial overview: Theory and simulation: Interpreting experimental data at the molecular level.

Best RB, Lindorff-Larsen K.

Curr Opin Struct Biol. 2018 Apr;49:iv-v. doi: 10.1016/j.sbi.2018.04.002. No abstract available.

PMID:
29685339
25.

Age, Loss Minimization, and the Role of Probability for Decision-Making.

Best R, Freund AM.

Gerontology. 2018;64(5):475-484. doi: 10.1159/000487636. Epub 2018 Apr 5.

PMID:
29621760
26.

Intragroup and intragenomic conflict over chemical defense against predators.

Best R, Ruxton GD, Gardner A.

Ecol Evol. 2018 Feb 19;8(6):3322-3329. doi: 10.1002/ece3.3926. eCollection 2018 Mar.

27.

Inferring properties of disordered chains from FRET transfer efficiencies.

Zheng W, Zerze GH, Borgia A, Mittal J, Schuler B, Best RB.

J Chem Phys. 2018 Mar 28;148(12):123329. doi: 10.1063/1.5006954.

PMID:
29604882
28.

An Extended Guinier Analysis for Intrinsically Disordered Proteins.

Zheng W, Best RB.

J Mol Biol. 2018 Aug 3;430(16):2540-2553. doi: 10.1016/j.jmb.2018.03.007. Epub 2018 Mar 21.

PMID:
29571687
29.

Co-Evolutionary Fitness Landscapes for Sequence Design.

Tian P, Louis JM, Baber JL, Aniana A, Best RB.

Angew Chem Int Ed Engl. 2018 May 14;57(20):5674-5678. doi: 10.1002/anie.201713220. Epub 2018 Mar 25.

PMID:
29512300
30.

Highly Disordered Amyloid-β Monomer Probed by Single-Molecule FRET and MD Simulation.

Meng F, Bellaiche MMJ, Kim JY, Zerze GH, Best RB, Chung HS.

Biophys J. 2018 Feb 27;114(4):870-884. doi: 10.1016/j.bpj.2017.12.025.

31.

Race to the native state.

Best RB.

Proc Natl Acad Sci U S A. 2018 Mar 6;115(10):2267-2269. doi: 10.1073/pnas.1722622115. Epub 2018 Feb 22. No abstract available.

32.

Extreme disorder in an ultrahigh-affinity protein complex.

Borgia A, Borgia MB, Bugge K, Kissling VM, Heidarsson PO, Fernandes CB, Sottini A, Soranno A, Buholzer KJ, Nettels D, Kragelund BB, Best RB, Schuler B.

Nature. 2018 Mar 1;555(7694):61-66. doi: 10.1038/nature25762. Epub 2018 Feb 21.

33.

Balancing Force Field Protein-Lipid Interactions To Capture Transmembrane Helix-Helix Association.

Domański J, Sansom MSP, Stansfeld PJ, Best RB.

J Chem Theory Comput. 2018 Mar 13;14(3):1706-1715. doi: 10.1021/acs.jctc.7b00983. Epub 2018 Feb 9.

34.

Sequence determinants of protein phase behavior from a coarse-grained model.

Dignon GL, Zheng W, Kim YC, Best RB, Mittal J.

PLoS Comput Biol. 2018 Jan 24;14(1):e1005941. doi: 10.1371/journal.pcbi.1005941. eCollection 2018 Jan.

35.

Pilot for the Australian Breast Device Registry (ABDR): a national opt-out clinical quality registry for breast device surgery.

Hopper I, Best RL, McNeil JJ, Mulvany CM, Moore CCM, Elder E, Pase M, Cooter RD, Evans SM.

BMJ Open. 2017 Dec 28;7(12):e017778. doi: 10.1136/bmjopen-2017-017778.

36.

Evolution as an ecosystem process: insights from genomics.

Matthews B, Best RJ, Feulner PGD, Narwani A, Limberger R.

Genome. 2018 Apr;61(4):298-309. doi: 10.1139/gen-2017-0044. Epub 2017 Dec 14.

37.

How Many Protein Sequences Fold to a Given Structure? A Coevolutionary Analysis.

Tian P, Best RB.

Biophys J. 2017 Oct 17;113(8):1719-1730. doi: 10.1016/j.bpj.2017.08.039.

38.

Re: Antenatal corticosteroids: it's all about timing: Antenatal corticosteroids: Time to get it right.

Ridout A, Watson H, Best R, Shennan A.

BJOG. 2018 Mar;125(4):506-507. doi: 10.1111/1471-0528.14915. Epub 2017 Oct 5. No abstract available.

39.

Transgenerational selection driven by divergent ecological impacts of hybridizing lineages.

Best RJ, Anaya-Rojas JM, Leal MC, Schmid DW, Seehausen O, Matthews B.

Nat Ecol Evol. 2017 Nov;1(11):1757-1765. doi: 10.1038/s41559-017-0308-2. Epub 2017 Sep 18.

PMID:
28963514
40.

Expression and isolation of recombinant tau.

Best RL, Chung PJ, Benbow SJ, Savage A, LaPointe NE, Safinya CR, Feinstein SC.

Methods Cell Biol. 2017;141:3-26. doi: 10.1016/bs.mcb.2017.06.001. Epub 2017 Jul 24.

PMID:
28882309
41.

[Surgical Refixation after Proximal Hamstring Tendon Avulsion Injuries: Does the Time of Surgery Influence Functional Outcomes?]

Best R, Eberle J, Beck F, Huth J, Becker U.

Sportverletz Sportschaden. 2017 Sep;31(3):160-166. doi: 10.1055/s-0043-113211. Epub 2017 Sep 4. German.

PMID:
28869997
42.

Management of giant retinal tears with vitrectomy and perfluorocarbon liquid postoperatively as a short-term tamponade.

Mikhail MA, Mangioris G, Best RM, McGimpsey S, Chan WC.

Eye (Lond). 2017 Sep;31(9):1290-1295. doi: 10.1038/eye.2017.157. Epub 2017 Aug 11.

43.

Phosphorylation of the FUS low-complexity domain disrupts phase separation, aggregation, and toxicity.

Monahan Z, Ryan VH, Janke AM, Burke KA, Rhoads SN, Zerze GH, O'Meally R, Dignon GL, Conicella AE, Zheng W, Best RB, Cole RN, Mittal J, Shewmaker F, Fawzi NL.

EMBO J. 2017 Oct 16;36(20):2951-2967. doi: 10.15252/embj.201696394. Epub 2017 Aug 8.

44.

Pediatric Drowning: A Standard Operating Procedure to Aid the Prehospital Management of Pediatric Cardiac Arrest Resulting From Submersion.

Best RR, Harris BHL, Walsh JL, Manfield T.

Pediatr Emerg Care. 2017 May 8. doi: 10.1097/PEC.0000000000001169. [Epub ahead of print]

PMID:
28486266
45.

Stoichiometric traits of stickleback: Effects of genetic background, rearing environment, and ontogeny.

Leal MC, Best RJ, Durston D, El-Sabaawi RW, Matthews B.

Ecol Evol. 2017 Mar 18;7(8):2617-2625. doi: 10.1002/ece3.2802. eCollection 2017 Apr.

46.

Response.

Best R, Walsh JL, Lole Harris BH, Wilson D.

Clin Med (Lond). 2017 Apr;17(2):191. doi: 10.7861/clinmedicine.17-2-191a. No abstract available.

47.
48.

Computational and theoretical advances in studies of intrinsically disordered proteins.

Best RB.

Curr Opin Struct Biol. 2017 Feb;42:147-154. doi: 10.1016/j.sbi.2017.01.006. Epub 2017 Mar 1. Review.

PMID:
28259050
49.

Evolution in a Community Context: On Integrating Ecological Interactions and Macroevolution.

Weber MG, Wagner CE, Best RJ, Harmon LJ, Matthews B.

Trends Ecol Evol. 2017 Apr;32(4):291-304. doi: 10.1016/j.tree.2017.01.003. Epub 2017 Feb 16. Review.

PMID:
28215448
50.

Disease Campaigns and the Decline of Treatment Advocacy.

Best RK.

J Health Polit Policy Law. 2017 Jun;42(3):425-457. doi: 10.1215/03616878-3802928. Epub 2017 Feb 17.

PMID:
28213392

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