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Items: 1 to 50 of 59

1.

Charting the Complexity of the Marine Microbiome through Single-Cell Genomics.

Pachiadaki MG, Brown JM, Brown J, Bezuidt O, Berube PM, Biller SJ, Poulton NJ, Burkart MD, La Clair JJ, Chisholm SW, Stepanauskas R.

Cell. 2019 Dec 12;179(7):1623-1635.e11. doi: 10.1016/j.cell.2019.11.017.

PMID:
31835036
2.

Human iPSC-derived microglia assume a primary microglia-like state after transplantation into the neonatal mouse brain.

Svoboda DS, Barrasa MI, Shu J, Rietjens R, Zhang S, Mitalipova M, Berube P, Fu D, Shultz LD, Bell GW, Jaenisch R.

Proc Natl Acad Sci U S A. 2019 Dec 10;116(50):25293-25303. doi: 10.1073/pnas.1913541116. Epub 2019 Nov 26.

PMID:
31772018
3.

Membrane ageing in full-scale water treatment plants.

Robinson S, Bérubé PR.

Water Res. 2020 Feb 1;169:115212. doi: 10.1016/j.watres.2019.115212. Epub 2019 Oct 18.

4.

Biological ion exchange as an alternative to biological activated carbon for drinking water treatment.

Liu Z, Lompe KM, Mohseni M, Bérubé PR, Sauvé S, Barbeau B.

Water Res. 2020 Jan 1;168:115148. doi: 10.1016/j.watres.2019.115148. Epub 2019 Oct 5.

PMID:
31622912
5.

Numerical and experimental investigation of pulse bubble aeration with high packing density hollow-fibre MBRs.

Radaei E, Liu X, Tng KH, Merendino G, Trujillo FJ, Bérubé PR, Leslie G.

Water Res. 2019 Sep 1;160:60-69. doi: 10.1016/j.watres.2019.05.056. Epub 2019 May 20.

PMID:
31132563
6.

Publisher Correction: Marine microbial metagenomes sampled across space and time.

Biller SJ, Berube PM, Dooley K, Williams M, Satinsky BM, Hackl T, Hogle SL, Coe A, Bergauer K, Bouman HA, Browning TJ, Corte D, Hassler C, Hulston D, Jacquot JE, Maas EW, Reinthaler T, Sintes E, Yokokawa T, Chisholm SW.

Sci Data. 2019 May 21;6(1):47. doi: 10.1038/s41597-019-0054-1.

7.

Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming.

Schiebinger G, Shu J, Tabaka M, Cleary B, Subramanian V, Solomon A, Gould J, Liu S, Lin S, Berube P, Lee L, Chen J, Brumbaugh J, Rigollet P, Hochedlinger K, Jaenisch R, Regev A, Lander ES.

Cell. 2019 Mar 7;176(6):1517. doi: 10.1016/j.cell.2019.02.026. No abstract available.

8.

Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming.

Schiebinger G, Shu J, Tabaka M, Cleary B, Subramanian V, Solomon A, Gould J, Liu S, Lin S, Berube P, Lee L, Chen J, Brumbaugh J, Rigollet P, Hochedlinger K, Jaenisch R, Regev A, Lander ES.

Cell. 2019 Feb 7;176(4):928-943.e22. doi: 10.1016/j.cell.2019.01.006. Epub 2019 Jan 31. Erratum in: Cell. 2019 Mar 7;176(6):1517.

PMID:
30712874
9.

Emergence of trait variability through the lens of nitrogen assimilation in Prochlorococcus.

Berube PM, Rasmussen A, Braakman R, Stepanauskas R, Chisholm SW.

Elife. 2019 Feb 1;8. pii: e41043. doi: 10.7554/eLife.41043.

10.

Long-term performance of biological ion exchange for the removal of natural organic matter and ammonia from surface waters.

Amini N, Papineau I, Storck V, Bérubé PR, Mohseni M, Barbeau B.

Water Res. 2018 Dec 1;146:1-9. doi: 10.1016/j.watres.2018.07.057. Epub 2018 Jul 25.

PMID:
30218906
11.

Marine microbial metagenomes sampled across space and time.

Biller SJ, Berube PM, Dooley K, Williams M, Satinsky BM, Hackl T, Hogle SL, Coe A, Bergauer K, Bouman HA, Browning TJ, De Corte D, Hassler C, Hulston D, Jacquot JE, Maas EW, Reinthaler T, Sintes E, Yokokawa T, Chisholm SW.

Sci Data. 2018 Sep 4;5:180176. doi: 10.1038/sdata.2018.176. Erratum in: Sci Data. 2019 May 21;6(1):47.

12.

Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments.

Berube PM, Biller SJ, Hackl T, Hogle SL, Satinsky BM, Becker JW, Braakman R, Collins SB, Kelly L, Berta-Thompson J, Coe A, Bergauer K, Bouman HA, Browning TJ, De Corte D, Hassler C, Hulata Y, Jacquot JE, Maas EW, Reinthaler T, Sintes E, Yokokawa T, Lindell D, Stepanauskas R, Chisholm SW.

Sci Data. 2018 Sep 4;5:180154. doi: 10.1038/sdata.2018.154.

13.

Performance of thin-film composite hollow fiber nanofiltration for the removal of dissolved Mn, Fe and NOM from domestic groundwater supplies.

Haddad M, Ohkame T, Bérubé PR, Barbeau B.

Water Res. 2018 Nov 15;145:408-417. doi: 10.1016/j.watres.2018.08.032. Epub 2018 Aug 22.

PMID:
30173101
14.

Alternative Splicing of the Delta-Opioid Receptor Gene Suggests Existence of New Functional Isoforms.

Piltonen M, Parisien M, Grégoire S, Chabot-Doré AJ, Jafarnejad SM, Bérubé P, Djambazian H, Sladek R, Geneau G, Willett P, Stone LS, Shabalina SA, Diatchenko L.

Mol Neurobiol. 2019 Apr;56(4):2855-2869. doi: 10.1007/s12035-018-1253-z. Epub 2018 Jul 31.

PMID:
30066306
15.

The hypotensive effect of activated apelin receptor is correlated with β-arrestin recruitment.

Besserer-Offroy É, Bérubé P, Côté J, Murza A, Longpré JM, Dumaine R, Lesur O, Auger-Messier M, Leduc R, Marsault É, Sarret P.

Pharmacol Res. 2018 May;131:7-16. doi: 10.1016/j.phrs.2018.02.032. Epub 2018 Mar 9.

PMID:
29530600
16.

The impact of loading approach and biological activity on NOM removal by ion exchange resins.

Winter J, Wray HE, Schulz M, Vortisch R, Barbeau B, Bérubé PR.

Water Res. 2018 May 1;134:301-310. doi: 10.1016/j.watres.2018.01.052. Epub 2018 Feb 20.

PMID:
29433080
17.

Stress response of a marine ammonia-oxidizing archaeon informs physiological status of environmental populations.

Qin W, Amin SA, Lundeen RA, Heal KR, Martens-Habbena W, Turkarslan S, Urakawa H, Costa KC, Hendrickson EL, Wang T, Beck DA, Tiquia-Arashiro SM, Taub F, Holmes AD, Vajrala N, Berube PM, Lowe TM, Moffett JW, Devol AH, Baliga NS, Arp DJ, Sayavedra-Soto LA, Hackett M, Armbrust EV, Ingalls AE, Stahl DA.

ISME J. 2018 Feb;12(2):508-519. doi: 10.1038/ismej.2017.186. Epub 2017 Oct 20.

18.

The Effect of Concentration Factor on Membrane Fouling.

Lok A, Bérubé PR, Andrews RC.

Membranes (Basel). 2017 Sep 1;7(3). pii: E50. doi: 10.3390/membranes7030050.

19.
20.

Nitrogen cost minimization is promoted by structural changes in the transcriptome of N-deprived Prochlorococcus cells.

Read RW, Berube PM, Biller SJ, Neveux I, Cubillos-Ruiz A, Chisholm SW, Grzymski JJ.

ISME J. 2017 Oct;11(10):2267-2278. doi: 10.1038/ismej.2017.88. Epub 2017 Jun 6.

21.

Operation of passive membrane systems for drinking water treatment.

Oka PA, Khadem N, Bérubé PR.

Water Res. 2017 May 15;115:287-296. doi: 10.1016/j.watres.2017.02.065. Epub 2017 Feb 28.

PMID:
28285238
22.

Integrated oxidation membrane filtration process - NOM rejection and membrane fouling.

Winter J, Uhl W, Bérubé PR.

Water Res. 2016 Nov 1;104:418-424. doi: 10.1016/j.watres.2016.08.024. Epub 2016 Aug 13.

PMID:
27579870
23.

Deep Sequencing Reveals Spatially Distributed Distinct Hot Spot Mutations in DICER1-Related Multinodular Goiter.

de Kock L, Bah I, Revil T, Bérubé P, Wu MK, Sabbaghian N, Priest JR, Ragoussis J, Foulkes WD.

J Clin Endocrinol Metab. 2016 Oct;101(10):3637-3645. Epub 2016 Jul 26.

PMID:
27459524
24.

Impact of PAC Fines in Fouling of Polymeric and Ceramic Low-Pressure Membranes for Drinking Water Treatment.

Oligny L, Bérubé PR, Barbeau B.

Membranes (Basel). 2016 Jul 7;6(3). pii: E38. doi: 10.3390/membranes6030038.

25.

C-Terminal modifications of apelin-13 significantly change ligand binding, receptor signaling, and hypotensive action.

Murza A, Besserer-Offroy É, Côté J, Bérubé P, Longpré JM, Dumaine R, Lesur O, Auger-Messier M, Leduc R, Sarret P, Marsault É.

J Med Chem. 2015 Mar 12;58(5):2431-40. doi: 10.1021/jm501916k. Epub 2015 Feb 24.

PMID:
25668242
26.

Prochlorococcus: the structure and function of collective diversity.

Biller SJ, Berube PM, Lindell D, Chisholm SW.

Nat Rev Microbiol. 2015 Jan;13(1):13-27. doi: 10.1038/nrmicro3378. Epub 2014 Dec 1. Review.

PMID:
25435307
27.

Physiology and evolution of nitrate acquisition in Prochlorococcus.

Berube PM, Biller SJ, Kent AG, Berta-Thompson JW, Roggensack SE, Roache-Johnson KH, Ackerman M, Moore LR, Meisel JD, Sher D, Thompson LR, Campbell L, Martiny AC, Chisholm SW.

ISME J. 2015 May;9(5):1195-207. doi: 10.1038/ismej.2014.211. Epub 2014 Oct 28.

28.

Convex lens-induced nanoscale templating.

Berard DJ, Michaud F, Mahshid S, Ahamed MJ, McFaul CM, Leith JS, Bérubé P, Sladek R, Reisner W, Leslie SR.

Proc Natl Acad Sci U S A. 2014 Sep 16;111(37):13295-300. doi: 10.1073/pnas.1321089111. Epub 2014 Aug 4.

29.

Closely related phytoplankton species produce similar suites of dissolved organic matter.

Becker JW, Berube PM, Follett CL, Waterbury JB, Chisholm SW, Delong EF, Repeta DJ.

Front Microbiol. 2014 Mar 28;5:111. doi: 10.3389/fmicb.2014.00111. eCollection 2014.

30.

Rate and extent NOM removal during oxidation and biofiltration.

Black KE, Bérubé PR.

Water Res. 2014 Apr 1;52:40-50. doi: 10.1016/j.watres.2013.12.017. Epub 2013 Dec 21.

PMID:
24451385
31.

Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus.

Biller SJ, Berube PM, Berta-Thompson JW, Kelly L, Roggensack SE, Awad L, Roache-Johnson KH, Ding H, Giovannoni SJ, Rocap G, Moore LR, Chisholm SW.

Sci Data. 2014 Sep 30;1:140034. doi: 10.1038/sdata.2014.34. eCollection 2014.

32.

Fusion of TTYH1 with the C19MC microRNA cluster drives expression of a brain-specific DNMT3B isoform in the embryonal brain tumor ETMR.

Kleinman CL, Gerges N, Papillon-Cavanagh S, Sin-Chan P, Pramatarova A, Quang DA, Adoue V, Busche S, Caron M, Djambazian H, Bemmo A, Fontebasso AM, Spence T, Schwartzentruber J, Albrecht S, Hauser P, Garami M, Klekner A, Bognar L, Montes JL, Staffa A, Montpetit A, Berube P, Zakrzewska M, Zakrzewski K, Liberski PP, Dong Z, Siegel PM, Duchaine T, Perotti C, Fleming A, Faury D, Remke M, Gallo M, Dirks P, Taylor MD, Sladek R, Pastinen T, Chan JA, Huang A, Majewski J, Jabado N.

Nat Genet. 2014 Jan;46(1):39-44. doi: 10.1038/ng.2849. Epub 2013 Dec 8.

PMID:
24316981
33.

Enkephalin knockdown in the basolateral amygdala reproduces vulnerable anxiety-like responses to chronic unpredictable stress.

Bérubé P, Poulin JF, Laforest S, Drolet G.

Neuropsychopharmacology. 2014 Apr;39(5):1159-68. doi: 10.1038/npp.2013.316. Epub 2013 Nov 11.

34.

Power induced by bubbles of different sizes and frequencies on to hollow fibers in submerged membrane systems.

Jankhah S, Bérubé PR.

Water Res. 2013 Nov 1;47(17):6516-26. doi: 10.1016/j.watres.2013.08.020. Epub 2013 Sep 11.

PMID:
24074817
35.

Assessing the effects of sodium hypochlorite exposure on the characteristics of PVDF based membranes.

Abdullah SZ, Bérubé PR.

Water Res. 2013 Sep 15;47(14):5392-9. doi: 10.1016/j.watres.2013.06.018. Epub 2013 Jun 28.

PMID:
23863391
36.

Enkephalin and dynorphin mRNA expression are associated with resilience or vulnerability to chronic social defeat stress.

Bérubé P, Laforest S, Bhatnagar S, Drolet G.

Physiol Behav. 2013 Oct 2;122:237-45. doi: 10.1016/j.physbeh.2013.04.009. Epub 2013 May 9.

PMID:
23665402
37.

Enkephalin knockdown in the central amygdala nucleus reduces unconditioned fear and anxiety.

Poulin JF, Bérubé P, Laforest S, Drolet G.

Eur J Neurosci. 2013 Apr;37(8):1357-67. doi: 10.1111/ejn.12134. Epub 2013 Feb 1.

PMID:
23368426
38.

Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics and biogeographic analysis.

Malmstrom RR, Rodrigue S, Huang KH, Kelly L, Kern SE, Thompson A, Roggensack S, Berube PM, Henn MR, Chisholm SW.

ISME J. 2013 Jan;7(1):184-98. doi: 10.1038/ismej.2012.89. Epub 2012 Aug 16.

39.

The importance of fluid dynamics for MBR fouling mitigation.

Böhm L, Drews A, Prieske H, Bérubé PR, Kraume M.

Bioresour Technol. 2012 Oct;122:50-61. doi: 10.1016/j.biortech.2012.05.069. Epub 2012 May 23. Review.

PMID:
22704186
40.

The divergent AmoC3 subunit of ammonia monooxygenase functions as part of a stress response system in Nitrosomonas europaea.

Berube PM, Stahl DA.

J Bacteriol. 2012 Jul;194(13):3448-56. doi: 10.1128/JB.00133-12. Epub 2012 Apr 27.

41.

Increased anxiety-like behaviors in rats experiencing chronic inflammatory pain.

Parent AJ, Beaudet N, Beaudry H, Bergeron J, Bérubé P, Drolet G, Sarret P, Gendron L.

Behav Brain Res. 2012 Apr 1;229(1):160-7. doi: 10.1016/j.bbr.2012.01.001. Epub 2012 Jan 8.

42.

Analysis of shear stress and energy consumption in a tubular airlift membrane system.

Ratkovich N, Chan CC, Berube PR, Nopens I.

Water Sci Technol. 2011;64(1):189-98.

PMID:
22053474
43.

Relationship between types of surface shear stress profiles and membrane fouling.

Chan CC, Bérubé PR, Hall ER.

Water Res. 2011 Dec 1;45(19):6403-16. doi: 10.1016/j.watres.2011.09.031. Epub 2011 Sep 22.

PMID:
22030085
44.

Investigation of the effect of viscosity on slug flow in airlift tubular membranes in search of a sludge surrogate.

Ratkovich N, Chan CC, Bérubé PR, Nopens I.

Water Sci Technol. 2010;61(7):1801-9. doi: 10.2166/wst.2010.118.

PMID:
20371939
45.

Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria.

Martens-Habbena W, Berube PM, Urakawa H, de la Torre JR, Stahl DA.

Nature. 2009 Oct 15;461(7266):976-9. doi: 10.1038/nature08465. Epub 2009 Sep 30.

PMID:
19794413
46.

Widespread metabolic potential for nitrite and nitrate assimilation among Prochlorococcus ecotypes.

Martiny AC, Kathuria S, Berube PM.

Proc Natl Acad Sci U S A. 2009 Jun 30;106(26):10787-92. doi: 10.1073/pnas.0902532106. Epub 2009 Jun 23.

47.

Whole-genome analysis of the ammonia-oxidizing bacterium, Nitrosomonas eutropha C91: implications for niche adaptation.

Stein LY, Arp DJ, Berube PM, Chain PS, Hauser L, Jetten MS, Klotz MG, Larimer FW, Norton JM, Op den Camp HJ, Shin M, Wei X.

Environ Microbiol. 2007 Dec;9(12):2993-3007.

PMID:
17991028
48.
49.

Transcription of all amoC copies is associated with recovery of Nitrosomonas europaea from ammonia starvation.

Berube PM, Samudrala R, Stahl DA.

J Bacteriol. 2007 Jun;189(11):3935-44. Epub 2007 Mar 23.

50.

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