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Mercury methylating microbial communities of boreal forest soils.

Xu J, Buck M, Eklöf K, Ahmed OO, Schaefer JK, Bishop K, Skyllberg U, Björn E, Bertilsson S, Bravo AG.

Sci Rep. 2019 Jan 24;9(1):518. doi: 10.1038/s41598-018-37383-z.


Freshwater carbon and nutrient cycles revealed through reconstructed population genomes.

Linz AM, He S, Stevens SLR, Anantharaman K, Rohwer RR, Malmstrom RR, Bertilsson S, McMahon KD.

PeerJ. 2018 Dec 10;6:e6075. doi: 10.7717/peerj.6075. eCollection 2018.


Depth and Dissolved Organic Carbon Shape Microbial Communities in Surface Influenced but Not Ancient Saline Terrestrial Aquifers.

Lopez-Fernandez M, Åström M, Bertilsson S, Dopson M.

Front Microbiol. 2018 Nov 27;9:2880. doi: 10.3389/fmicb.2018.02880. eCollection 2018.


Metatranscriptomes Reveal That All Three Domains of Life Are Active but Are Dominated by Bacteria in the Fennoscandian Crystalline Granitic Continental Deep Biosphere.

Lopez-Fernandez M, Simone D, Wu X, Soler L, Nilsson E, Holmfeldt K, Lantz H, Bertilsson S, Dopson M.

MBio. 2018 Nov 20;9(6). pii: e01792-18. doi: 10.1128/mBio.01792-18.


Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes.

Alneberg J, Karlsson CMG, Divne AM, Bergin C, Homa F, Lindh MV, Hugerth LW, Ettema TJG, Bertilsson S, Andersson AF, Pinhassi J.

Microbiome. 2018 Sep 28;6(1):173. doi: 10.1186/s40168-018-0550-0.


Methanogens and Iron-Reducing Bacteria: the Overlooked Members of Mercury-Methylating Microbial Communities in Boreal Lakes.

Bravo AG, Peura S, Buck M, Ahmed O, Mateos-Rivera A, Herrero Ortega S, Schaefer JK, Bouchet S, Tolu J, Björn E, Bertilsson S.

Appl Environ Microbiol. 2018 Nov 15;84(23). pii: e01774-18. doi: 10.1128/AEM.01774-18. Print 2018 Dec 1.


Temporal variability of bacterioplankton is habitat driven.

Obertegger U, Bertilsson S, Pindo M, Larger S, Flaim G.

Mol Ecol. 2018 Nov;27(21):4322-4335. doi: 10.1111/mec.14855. Epub 2018 Sep 26.


Survival of Campylobacter jejuni and Campylobacter coli water isolates in lake and well water.

Nilsson A, Johansson C, Skarp A, Kaden R, Bertilsson S, Rautelin H.

APMIS. 2018 Sep;126(9):762-770. doi: 10.1111/apm.12879.


Investigation of viable taxa in the deep terrestrial biosphere suggests high rates of nutrient recycling.

Lopez-Fernandez M, Broman E, Turner S, Wu X, Bertilsson S, Dopson M.

FEMS Microbiol Ecol. 2018 Aug 1;94(8). doi: 10.1093/femsec/fiy121.


An in vitro evaluation of browser and grazer fermentation efficiency and microbiota using European moose spring and summer foods.

Krizsan SJ, Mateos-Rivera A, Bertilsson S, Felton A, Anttila A, Ramin M, Vaga M, Gidlund H, Huhtanen P.

Ecol Evol. 2018 Mar 31;8(8):4183-4196. doi: 10.1002/ece3.3920. eCollection 2018 Apr.


Inter-laboratory testing of the effect of DNA blocking reagent G2 on DNA extraction from low-biomass clay samples.

Jacobsen CS, Nielsen TK, Vester JK, Stougaard P, Nielsen JL, Voriskova J, Winding A, Baldrian P, Liu B, Frostegård Å, Pedersen D, Tveit AT, Svenning MM, Tebbe CC, Øvreås L, Jakobsen PB, Blazewicz SJ, Hubablek V, Bertilsson S, Hansen LH, Cary SC, Holben WE, Ekelund F, Bælum J.

Sci Rep. 2018 Apr 9;8(1):5711. doi: 10.1038/s41598-018-24082-y.


Presence of Aedes and Anopheles mosquito larvae is correlated to bacteria found in domestic water-storage containers.

Nilsson LKJ, Sharma A, Bhatnagar RK, Bertilsson S, Terenius O.

FEMS Microbiol Ecol. 2018 Jun 1;94(6). doi: 10.1093/femsec/fiy058.


Serum Osteopontin Is Associated With Organ Failure in Patients With Acute Pancreatitis.

Swärd P, Bertilsson S, Struglics A, Kalaitzakis E.

Pancreas. 2018 Mar;47(3):e7-e10. doi: 10.1097/MPA.0000000000000991. No abstract available.


Geobacteraceae are important members of mercury-methylating microbial communities of sediments impacted by waste water releases.

Bravo AG, Zopfi J, Buck M, Xu J, Bertilsson S, Schaefer JK, Poté J, Cosio C.

ISME J. 2018 Mar;12(3):802-812. doi: 10.1038/s41396-017-0007-7. Epub 2018 Jan 10.


Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations.

Garcia SL, Stevens SLR, Crary B, Martinez-Garcia M, Stepanauskas R, Woyke T, Tringe SG, Andersson SGE, Bertilsson S, Malmstrom RR, McMahon KD.

ISME J. 2018 Mar;12(3):742-755. doi: 10.1038/s41396-017-0001-0. Epub 2017 Dec 8.


Influence of pulsed and continuous substrate inputs on freshwater bacterial community composition and functioning in bioreactors.

Ricão Canelhas M, Andersson M, Eiler A, Lindström ES, Bertilsson S.

Environ Microbiol. 2017 Dec;19(12):5078-5087. doi: 10.1111/1462-2920.13979. Epub 2017 Dec 4.


Vitamin and Amino Acid Auxotrophy in Anaerobic Consortia Operating under Methanogenic Conditions.

Hubalek V, Buck M, Tan B, Foght J, Wendeberg A, Berry D, Bertilsson S, Eiler A.

mSystems. 2017 Oct 31;2(5). pii: e00038-17. doi: 10.1128/mSystems.00038-17. eCollection 2017 Sep-Oct.


Ecophysiology of Freshwater Verrucomicrobia Inferred from Metagenome-Assembled Genomes.

He S, Stevens SLR, Chan LK, Bertilsson S, Glavina Del Rio T, Tringe SG, Malmstrom RR, McMahon KD.

mSphere. 2017 Sep 27;2(5). pii: e00277-17. doi: 10.1128/mSphere.00277-17. eCollection 2017 Sep-Oct.


Formation of mercury methylation hotspots as a consequence of forestry operations.

Eklöf K, Bishop K, Bertilsson S, Björn E, Buck M, Skyllberg U, Osman OA, Kronberg RM, Bravo AG.

Sci Total Environ. 2018 Feb 1;613-614:1069-1078. doi: 10.1016/j.scitotenv.2017.09.151. Epub 2017 Sep 22.


Metabolic Network Analysis and Metatranscriptomics Reveal Auxotrophies and Nutrient Sources of the Cosmopolitan Freshwater Microbial Lineage acI.

Hamilton JJ, Garcia SL, Brown BS, Oyserman BO, Moya-Flores F, Bertilsson S, Malmstrom RR, Forest KT, McMahon KD.

mSystems. 2017 Aug 29;2(4). pii: e00091-17. doi: 10.1128/mSystems.00091-17. eCollection 2017 Jul-Aug.


Emerging microbiota during cold storage and temperature abuse of ready-to-eat salad​.

Söderqvist K, Ahmed Osman O, Wolff C, Bertilsson S, Vågsholm I, Boqvist S.

Infect Ecol Epidemiol. 2017 Jun 6;7(1):1328963. doi: 10.1080/20008686.2017.1328963. eCollection 2017.


Acute Pancreatitis: Impact of Alcohol Consumption and Seasonal Factors.

Bertilsson S, Håkansson A, Kalaitzakis E.

Alcohol Alcohol. 2017 May 1;52(3):383-389. doi: 10.1093/alcalc/agx005.


Mixing of water masses caused by a drifting iceberg affects bacterial activity, community composition and substrate utilization capability in the Southern Ocean.

Dinasquet J, Richert I, Logares R, Yager P, Bertilsson S, Riemann L.

Environ Microbiol. 2017 Jun;19(6):2453-2467. doi: 10.1111/1462-2920.13769. Epub 2017 May 26.


How to see more: double hybridization to reveal ecological differentiation among close bacterial relatives.

Bertilsson S.

Environ Microbiol. 2017 Jun;19(6):2110-2111. doi: 10.1111/1462-2920.13740. Epub 2017 May 5. No abstract available.


Potential for hydrogen-oxidizing chemolithoautotrophic and diazotrophic populations to initiate biofilm formation in oligotrophic, deep terrestrial subsurface waters.

Wu X, Pedersen K, Edlund J, Eriksson L, Åström M, Andersson AF, Bertilsson S, Dopson M.

Microbiome. 2017 Mar 23;5(1):37. doi: 10.1186/s40168-017-0253-y.


Seasonal Variation in Abundance and Diversity of Bacterial Methanotrophs in Five Temperate Lakes.

Samad MS, Bertilsson S.

Front Microbiol. 2017 Feb 3;8:142. doi: 10.3389/fmicb.2017.00142. eCollection 2017.


Molecular composition of organic matter controls methylmercury formation in boreal lakes.

Bravo AG, Bouchet S, Tolu J, Björn E, Mateos-Rivera A, Bertilsson S.

Nat Commun. 2017 Feb 9;8:14255. doi: 10.1038/ncomms14255.


Interactions of Freshwater Cyanobacteria with Bacterial Antagonists.

Osman OA, Beier S, Grabherr M, Bertilsson S.

Appl Environ Microbiol. 2017 Mar 17;83(7). pii: e02634-16. doi: 10.1128/AEM.02634-16. Print 2017 Apr 1.


Habitat generalists and specialists in microbial communities across a terrestrial-freshwater gradient.

Monard C, Gantner S, Bertilsson S, Hallin S, Stenlid J.

Sci Rep. 2016 Nov 25;6:37719. doi: 10.1038/srep37719.


Effects of multiple dimensions of bacterial diversity on functioning, stability and multifunctionality.

Roger F, Bertilsson S, Langenheder S, Osman OA, Gamfeldt L.

Ecology. 2016 Oct;97(10):2716-2728. doi: 10.1002/ecy.1518. Epub 2016 Sep 15.


Microproteinuria Predicts Organ Failure in Patients Presenting with Acute Pancreatitis.

Bertilsson S, Swärd P, Håkansson A, Tofik R, Rippe B, Kalaitzakis E.

Dig Dis Sci. 2016 Dec;61(12):3592-3601. Epub 2016 Oct 12.


Connectivity to the surface determines diversity patterns in subsurface aquifers of the Fennoscandian shield.

Hubalek V, Wu X, Eiler A, Buck M, Heim C, Dopson M, Bertilsson S, Ionescu D.

ISME J. 2016 Oct;10(10):2556. doi: 10.1038/ismej.2016.94. No abstract available.


Cryptosporidium as a testbed for single cell genome characterization of unicellular eukaryotes.

Troell K, Hallström B, Divne AM, Alsmark C, Arrighi R, Huss M, Beser J, Bertilsson S.

BMC Genomics. 2016 Jun 23;17:471. doi: 10.1186/s12864-016-2815-y.


Connectivity to the surface determines diversity patterns in subsurface aquifers of the Fennoscandian shield.

Hubalek V, Wu X, Eiler A, Buck M, Heim C, Dopson M, Bertilsson S, Ionescu D.

ISME J. 2016 Oct;10(10):2447-58. doi: 10.1038/ismej.2016.36. Epub 2016 Mar 29. Erratum in: ISME J. 2016 Oct;10(10):2556.


Dysfunction of Circulating Polymorphonuclear Leukocytes and Monocytes in Ambulatory Cirrhotics Predicts Patient Outcome.

Sargenti K, Johansson Å, Bertilsson S, Mattsby-Baltzer I, Klintman D, Kalaitzakis E.

Dig Dis Sci. 2016 Aug;61(8):2294-302. doi: 10.1007/s10620-016-4132-3. Epub 2016 Mar 24.


Tuning fresh: radiation through rewiring of central metabolism in streamlined bacteria.

Eiler A, Mondav R, Sinclair L, Fernandez-Vidal L, Scofield DG, Schwientek P, Martinez-Garcia M, Torrents D, McMahon KD, Andersson SG, Stepanauskas R, Woyke T, Bertilsson S.

ISME J. 2016 Aug;10(8):1902-14. doi: 10.1038/ismej.2015.260. Epub 2016 Jan 19.


Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations.

Bendall ML, Stevens SL, Chan LK, Malfatti S, Schwientek P, Tremblay J, Schackwitz W, Martin J, Pati A, Bushnell B, Froula J, Kang D, Tringe SG, Bertilsson S, Moran MA, Shade A, Newton RJ, McMahon KD, Malmstrom RR.

ISME J. 2016 Jul;10(7):1589-601. doi: 10.1038/ismej.2015.241. Epub 2016 Jan 8.


Are freshwater bacterioplankton indifferent to variable types of amino acid substrates?

Ricão Canelhas M, Eiler A, Bertilsson S.

FEMS Microbiol Ecol. 2016 Feb;92(2). pii: fiw005. doi: 10.1093/femsec/fiw005. Epub 2016 Jan 5.


Metagenome-Based Metabolic Reconstruction Reveals the Ecophysiological Function of Epsilonproteobacteria in a Hydrocarbon-Contaminated Sulfidic Aquifer.

Keller AH, Schleinitz KM, Starke R, Bertilsson S, Vogt C, Kleinsteuber S.

Front Microbiol. 2015 Dec 10;6:1396. doi: 10.3389/fmicb.2015.01396. eCollection 2015.


Microbial metagenomes from three aquifers in the Fennoscandian shield terrestrial deep biosphere reveal metabolic partitioning among populations.

Wu X, Holmfeldt K, Hubalek V, Lundin D, Åström M, Bertilsson S, Dopson M.

ISME J. 2016 May;10(5):1192-203. doi: 10.1038/ismej.2015.185. Epub 2015 Oct 20.


Acute Pancreatitis and Use of Pancreatitis-Associated Drugs: A 10-Year Population-Based Cohort Study.

Bertilsson S, Kalaitzakis E.

Pancreas. 2015 Oct;44(7):1096-104. doi: 10.1097/MPA.0000000000000406.


Metagenomic insights into strategies of aerobic and anaerobic carbon and nitrogen transformation in boreal lakes.

Peura S, Sinclair L, Bertilsson S, Eiler A.

Sci Rep. 2015 Jul 10;5:12102. doi: 10.1038/srep12102.


Bacterial infections in alcoholic and nonalcoholic liver cirrhosis.

Sargenti K, Prytz H, Nilsson E, Bertilsson S, Kalaitzakis E.

Eur J Gastroenterol Hepatol. 2015 Sep;27(9):1080-6. doi: 10.1097/MEG.0000000000000396.


Factors That Affect Disease Progression After First Attack of Acute Pancreatitis.

Bertilsson S, Swärd P, Kalaitzakis E.

Clin Gastroenterol Hepatol. 2015 Sep;13(9):1662-9.e3. doi: 10.1016/j.cgh.2015.04.012. Epub 2015 Apr 22. Erratum in: Clin Gastroenterol Hepatol. 2017 Apr;15(4):608.


Microbial community composition and diversity via 16S rRNA gene amplicons: evaluating the illumina platform.

Sinclair L, Osman OA, Bertilsson S, Eiler A.

PLoS One. 2015 Feb 3;10(2):e0116955. doi: 10.1371/journal.pone.0116955. eCollection 2015.


Resistant microbial cooccurrence patterns inferred by network topology.

Peura S, Bertilsson S, Jones RI, Eiler A.

Appl Environ Microbiol. 2015 Mar;81(6):2090-7. doi: 10.1128/AEM.03660-14. Epub 2015 Jan 9.


Sources and remediation techniques for mercury contaminated soil.

Xu J, Bravo AG, Lagerkvist A, Bertilsson S, Sjöblom R, Kumpiene J.

Environ Int. 2015 Jan;74:42-53. doi: 10.1016/j.envint.2014.09.007. Epub 2014 Oct 15. Review.


Winter bloom of a rare betaproteobacterium in the Arctic Ocean.

Alonso-Sáez L, Zeder M, Harding T, Pernthaler J, Lovejoy C, Bertilsson S, Pedrós-Alió C.

Front Microbiol. 2014 Aug 20;5:425. doi: 10.3389/fmicb.2014.00425. eCollection 2014.


Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage.

Ghylin TW, Garcia SL, Moya F, Oyserman BO, Schwientek P, Forest KT, Mutschler J, Dwulit-Smith J, Chan LK, Martinez-Garcia M, Sczyrba A, Stepanauskas R, Grossart HP, Woyke T, Warnecke F, Malmstrom R, Bertilsson S, McMahon KD.

ISME J. 2014 Dec;8(12):2503-16. doi: 10.1038/ismej.2014.135. Epub 2014 Aug 5.


Trait-based approaches for understanding microbial biodiversity and ecosystem functioning.

Krause S, Le Roux X, Niklaus PA, Van Bodegom PM, Lennon JT, Bertilsson S, Grossart HP, Philippot L, Bodelier PL.

Front Microbiol. 2014 May 27;5:251. doi: 10.3389/fmicb.2014.00251. eCollection 2014. Review.

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