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Items: 14

1.

Dissecting HIV Virulence: Heritability of Setpoint Viral Load, CD4+ T-Cell Decline, and Per-Parasite Pathogenicity.

Bertels F, Marzel A, Leventhal G, Mitov V, Fellay J, Günthard HF, Böni J, Yerly S, Klimkait T, Aubert V, Battegay M, Rauch A, Cavassini M, Calmy A, Bernasconi E, Schmid P, Scherrer AU, Müller V, Bonhoeffer S, Kouyos R, Regoes RR; Swiss HIV Cohort Study.

Mol Biol Evol. 2018 Jan 1;35(1):27-37. doi: 10.1093/molbev/msx246.

2.

Identification and Characterization of Domesticated Bacterial Transposases.

Bertels F, Gallie J, Rainey PB.

Genome Biol Evol. 2017 Aug 1;9(8):2110-2121. doi: 10.1093/gbe/evx146.

3.

Recombination of Virulence Genes in Divergent Acidovorax avenae Strains That Infect a Common Host.

Zeng Q, Wang J, Bertels F, Giordano PR, Chilvers MI, Huntley RB, Vargas JM, Sundin GW, Jacobs JL, Yang CH.

Mol Plant Microbe Interact. 2017 Oct;30(10):813-828. doi: 10.1094/MPMI-06-17-0151-R. Epub 2017 Aug 28.

PMID:
28682158
4.

Discovering Complete Quasispecies in Bacterial Genomes.

Bertels F, Gokhale CS, Traulsen A.

Genetics. 2017 Aug;206(4):2149-2157. doi: 10.1534/genetics.117.201160. Epub 2017 Jun 19.

5.

Bistability in a metabolic network underpins the de novo evolution of colony switching in Pseudomonas fluorescens.

Gallie J, Libby E, Bertels F, Remigi P, Jendresen CB, Ferguson GC, Desprat N, Buffing MF, Sauer U, Beaumont HJ, Martinussen J, Kilstrup M, Rainey PB.

PLoS Biol. 2015 Mar 12;13(3):e1002109. doi: 10.1371/journal.pbio.1002109. eCollection 2015 Mar.

6.

Metabolic cross-feeding via intercellular nanotubes among bacteria.

Pande S, Shitut S, Freund L, Westermann M, Bertels F, Colesie C, Bischofs IB, Kost C.

Nat Commun. 2015 Feb 23;6:6238. doi: 10.1038/ncomms7238.

PMID:
25703793
7.

Automated reconstruction of whole-genome phylogenies from short-sequence reads.

Bertels F, Silander OK, Pachkov M, Rainey PB, van Nimwegen E.

Mol Biol Evol. 2014 May;31(5):1077-88. doi: 10.1093/molbev/msu088. Epub 2014 Mar 5.

8.
9.

Genomic analysis of the Kiwifruit pathogen Pseudomonas syringae pv. actinidiae provides insight into the origins of an emergent plant disease.

McCann HC, Rikkerink EH, Bertels F, Fiers M, Lu A, Rees-George J, Andersen MT, Gleave AP, Haubold B, Wohlers MW, Guttman DS, Wang PW, Straub C, Vanneste JL, Rainey PB, Templeton MD.

PLoS Pathog. 2013;9(7):e1003503. doi: 10.1371/journal.ppat.1003503. Epub 2013 Jul 25. Erratum in: PLoS Pathog. 2013;9(9). doi:10.1371/annotation/af157ddc-200a-4105-b243-3f01251cc677. Vanneste, Joel [corrected to Vanneste, Joel L].

10.

Design and characterization of auxotrophy-based amino acid biosensors.

Bertels F, Merker H, Kost C.

PLoS One. 2012;7(7):e41349. doi: 10.1371/journal.pone.0041349. Epub 2012 Jul 19.

11.

Curiosities of REPINs and RAYTs.

Bertels F, Rainey PB.

Mob Genet Elements. 2011 Nov 1;1(4):262-268.

12.

Within-genome evolution of REPINs: a new family of miniature mobile DNA in bacteria.

Bertels F, Rainey PB.

PLoS Genet. 2011 Jun;7(6):e1002132. doi: 10.1371/journal.pgen.1002132. Epub 2011 Jun 16.

13.

Global identification of yeast chromosome interactions using Genome conformation capture.

Rodley CD, Bertels F, Jones B, O'Sullivan JM.

Fungal Genet Biol. 2009 Nov;46(11):879-86. doi: 10.1016/j.fgb.2009.07.006. Epub 2009 Jul 21.

PMID:
19628047
14.

The perils of plenty: what are we going to do with all these genes?

Rodrigo A, Bertels F, Heled J, Noder R, Shearman H, Tsai P.

Philos Trans R Soc Lond B Biol Sci. 2008 Dec 27;363(1512):3893-902. doi: 10.1098/rstb.2008.0173.

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