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Items: 18


Navigating the Functional Landscape of Transcription Factors via Non-Negative Tensor Factorization Analysis of MEDLINE Abstracts.

Roy S, Yun D, Madahian B, Berry MW, Deng LY, Goldowitz D, Homayouni R.

Front Bioeng Biotechnol. 2017 Aug 28;5:48. doi: 10.3389/fbioe.2017.00048. eCollection 2017.


Classification of T cell movement tracks allows for prediction of cell function.

Kelemen RK, He GF, Woo HL, Lane T, Rempe C, Wang J, Cockburn IA, Amino R, Ganusov VV, Berry MW.

Int J Comput Biol Drug Des. 2014;7(2-3):113-29. doi: 10.1504/IJCBDD.2014.061655. Epub 2014 May 28.


A single CT for attenuation correction of both rest and stress SPECT myocardial perfusion imaging: a retrospective feasibility study.

Ahlman MA, Nietert PJ, Wahlquist AE, Serguson JM, Berry MW, Suranyi P, Liu S, Spicer KM.

Int J Clin Exp Med. 2014 Jan 15;7(1):148-55. eCollection 2014.


PolyLens: software for map-based visualisation and analysis of genome-scale polymorphism data.

Berry MW, Gao T, Pathan R, Stuart GW.

Int J Comput Biol Drug Des. 2013;6(1-2):93-106. doi: 10.1504/IJCBDD.2013.052204. Epub 2013 Feb 21.


Assuring the quality of next-generation sequencing in clinical laboratory practice.

Gargis AS, Kalman L, Berry MW, Bick DP, Dimmock DP, Hambuch T, Lu F, Lyon E, Voelkerding KV, Zehnbauer BA, Agarwala R, Bennett SF, Chen B, Chin EL, Compton JG, Das S, Farkas DH, Ferber MJ, Funke BH, Furtado MR, Ganova-Raeva LM, Geigenm├╝ller U, Gunselman SJ, Hegde MR, Johnson PL, Kasarskis A, Kulkarni S, Lenk T, Liu CS, Manion M, Manolio TA, Mardis ER, Merker JD, Rajeevan MS, Reese MG, Rehm HL, Simen BB, Yeakley JM, Zook JM, Lubin IM.

Nat Biotechnol. 2012 Nov;30(11):1033-6. doi: 10.1038/nbt.2403. No abstract available.


A modern series of percutaneous intracavitary instillation of amphotericin B for the treatment of severe hemoptysis from pulmonary aspergilloma.

Kravitz JN, Berry MW, Schabel SI, Judson MA.

Chest. 2013 May;143(5):1414-1421. doi: 10.1378/chest.12-1784.


Latent Semantic Indexing of PubMed abstracts for identification of transcription factor candidates from microarray derived gene sets.

Roy S, Heinrich K, Phan V, Berry MW, Homayouni R.

BMC Bioinformatics. 2011 Oct 18;12 Suppl 10:S19. doi: 10.1186/1471-2105-12-S10-S19.


Functional cohesion of gene sets determined by latent semantic indexing of PubMed abstracts.

Xu L, Furlotte N, Lin Y, Heinrich K, Berry MW, George EO, Homayouni R.

PLoS One. 2011 Apr 14;6(4):e18851. doi: 10.1371/journal.pone.0018851.


Discovering gene functional relationships using FAUN (Feature Annotation Using Nonnegative matrix factorization).

Tjioe E, Berry MW, Homayouni R.

BMC Bioinformatics. 2010 Oct 7;11 Suppl 6:S14. doi: 10.1186/1471-2105-11-S6-S14.


Bioinformatic analysis reveals cRel as a regulator of a subset of interferon-stimulated genes.

Wei L, Fan M, Xu L, Heinrich K, Berry MW, Homayouni R, Pfeffer LM.

J Interferon Cytokine Res. 2008 Sep;28(9):541-51. doi: 10.1089/jir.2007.0136.


Retinoic acid prevents Chlamydia pneumoniae-induced foam cell development in a mouse model of atherosclerosis.

Jiang SJ, Campbell LA, Berry MW, Rosenfeld ME, Kuo CC.

Microbes Infect. 2008 Oct;10(12-13):1393-7. doi: 10.1016/j.micinf.2008.07.022. Epub 2008 Jul 17.


Gene tree labeling using nonnegative matrix factorization on biomedical literature.

Heinrich KE, Berry MW, Homayouni R.

Comput Intell Neurosci. 2008:276535. doi: 10.1155/2008/276535.


Identification and characterization of Chlamydia pneumoniae-specific proteins that activate tumor necrosis factor alpha production in RAW 264.7 murine macrophages.

Jiang SJ, Kuo CC, Berry MW, Lee AW, Campbell LA.

Infect Immun. 2008 Apr;76(4):1558-64. doi: 10.1128/IAI.01331-07. Epub 2008 Jan 28.


Gene clustering by latent semantic indexing of MEDLINE abstracts.

Homayouni R, Heinrich K, Wei L, Berry MW.

Bioinformatics. 2005 Jan 1;21(1):104-15. Epub 2004 Aug 12.


Work-site health promotion: the effects of a goal-setting program on nutrition-related behaviors.

Berry MW, Danish SJ, Rinke WJ, Smiciklas-Wright H.

J Am Diet Assoc. 1989 Jul;89(7):914-20, 923.


Integrating research into clinical practice: a model and call for action.

Rinke WJ, Berry MW.

J Am Diet Assoc. 1987 Feb;87(2):159-61. No abstract available.


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