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Neutrophil Extracellular Traps Induce Tissue-Invasive Monocytes in Granulomatosis With Polyangiitis.

Akiyama M, Zeisbrich M, Ibrahim N, Ohtsuki S, Berry GJ, Hwang PH, Goronzy JJ, Weyand CM.

Front Immunol. 2019 Nov 13;10:2617. doi: 10.3389/fimmu.2019.02617. eCollection 2019.


Targeted deep sequencing of cell-free DNA in serous body cavity fluids with malignant, suspicious, and benign cytology.

Yang SR, Mooney KL, Libiran P, Jones CD, Joshi R, Lau HD, Stehr H, Berry GJ, Zehnder JL, Long SR, Kong CS, Kunder CA.

Cancer Cytopathol. 2020 Jan;128(1):43-56. doi: 10.1002/cncy.22205. Epub 2019 Nov 21.


Comparison of the Panther Fusion and BD MAX Group B Streptococcus (GBS) Assays for Detection of GBS in Prenatal Screening Specimens.

Berry GJ, Zhang F, Manji R, Juretschko S.

J Clin Microbiol. 2019 Oct 23;57(11). pii: e01034-19. doi: 10.1128/JCM.01034-19. Print 2019 Nov.


The DNA Repair Nuclease MRE11A Functions as a Mitochondrial Protector and Prevents T Cell Pyroptosis and Tissue Inflammation.

Li Y, Shen Y, Jin K, Wen Z, Cao W, Wu B, Wen R, Tian L, Berry GJ, Goronzy JJ, Weyand CM.

Cell Metab. 2019 Sep 3;30(3):477-492.e6. doi: 10.1016/j.cmet.2019.06.016. Epub 2019 Jul 18.


CD28 Signaling Controls Metabolic Fitness of Pathogenic T Cells in Medium and Large Vessel Vasculitis.

Zhang H, Watanabe R, Berry GJ, Nadler SG, Goronzy JJ, Weyand CM.

J Am Coll Cardiol. 2019 Apr 16;73(14):1811-1823. doi: 10.1016/j.jacc.2019.01.049.


Cytokines, growth factors and proteases in medium and large vessel vasculitis.

Weyand CM, Watanabe R, Zhang H, Akiyama M, Berry GJ, Goronzy JJ.

Clin Immunol. 2019 Sep;206:33-41. doi: 10.1016/j.clim.2019.02.007. Epub 2019 Feb 14.


Donor-derived cell-free DNA predicts allograft failure and mortality after lung transplantation.

Agbor-Enoh S, Wang Y, Tunc I, Jang MK, Davis A, De Vlaminck I, Luikart H, Shah PD, Timofte I, Brown AW, Marishta A, Bhatti K, Gorham S, Fideli U, Wylie J, Grimm D, Goodwin N, Yang Y, Patel K, Zhu J, Iacono A, Orens JB, Nathan SD, Marboe C, Berry GJ, Quake SR, Khush K, Valantine HA.

EBioMedicine. 2019 Feb;40:541-553. doi: 10.1016/j.ebiom.2018.12.029. Epub 2019 Jan 26.


Spectrum of chronic lung allograft pathology in a mouse minor-mismatched orthotopic lung transplant model.

Martinu T, Oishi H, Juvet SC, Cypel M, Liu M, Berry GJ, Hwang DM, Keshavjee S.

Am J Transplant. 2019 Jan;19(1):247-258. doi: 10.1111/ajt.15167. Epub 2018 Nov 29.


An Unexpected Colonic Mass.

Li AA, Cholankeril G, Berry GJ, Fernandez-Becker N.

Am J Gastroenterol. 2019 Jan;114(1):180-181. doi: 10.1038/s41395-018-0363-6. No abstract available.


Glucose metabolism controls disease-specific signatures of macrophage effector functions.

Watanabe R, Hilhorst M, Zhang H, Zeisbrich M, Berry GJ, Wallis BB, Harrison DG, Giacomini JC, Goronzy JJ, Weyand CM.

JCI Insight. 2018 Oct 18;3(20). pii: 123047. doi: 10.1172/jci.insight.123047.


MMP (Matrix Metalloprotease)-9-Producing Monocytes Enable T Cells to Invade the Vessel Wall and Cause Vasculitis.

Watanabe R, Maeda T, Zhang H, Berry GJ, Zeisbrich M, Brockett R, Greenstein AE, Tian L, Goronzy JJ, Weyand CM.

Circ Res. 2018 Aug 31;123(6):700-715. doi: 10.1161/CIRCRESAHA.118.313206.


Acute Limited Intimal Tears of the Thoracic Aorta.

Chin AS, Willemink MJ, Kino A, Hinostroza V, Sailer AM, Fischbein MP, Mitchell RS, Berry GJ, Miller DC, Fleischmann D.

J Am Coll Cardiol. 2018 Jun 19;71(24):2773-2785. doi: 10.1016/j.jacc.2018.03.531.


Pathological antibody-mediated rejection in pediatric heart transplant recipients: Immunologic risk factors, hemodynamic significance, and outcomes.

Hollander SA, Peng DM, Mills M, Berry GJ, Fedrigo M, McElhinney DB, Almond CS, Rosenthal DN.

Pediatr Transplant. 2018 Aug;22(5):e13197. doi: 10.1111/petr.13197. Epub 2018 May 4.


Gastrointestinal Tract Vasculopathy: Clinicopathology and Description of a Possible "New Entity" With Protean Features.

Louie CY, DiMaio MA, Charville GW, Berry GJ, Longacre TA.

Am J Surg Pathol. 2018 Jul;42(7):866-876. doi: 10.1097/PAS.0000000000001060.


Late manifestation of alloantibody-associated injury and clinical pulmonary antibody-mediated rejection: Evidence from cell-free DNA analysis.

Agbor-Enoh S, Jackson AM, Tunc I, Berry GJ, Cochrane A, Grimm D, Davis A, Shah P, Brown AW, Wang Y, Timofte I, Shah P, Gorham S, Wylie J, Goodwin N, Jang MK, Marishta A, Bhatti K, Fideli U, Yang Y, Luikart H, Cao Z, Pirooznia M, Zhu J, Marboe C, Iacono A, Nathan SD, Orens J, Valantine HA, Khush K.

J Heart Lung Transplant. 2018 Jul;37(7):925-932. doi: 10.1016/j.healun.2018.01.1305. Epub 2018 Jan 31.


Comparison of the Alere i Strep A Test and the BD Veritor System in the Detection of Group A Streptococcus and the Hypothetical Impact of Results on Antibiotic Utilization.

Berry GJ, Miller CR, Prats MM, Marquez C, Oladipo OO, Loeffelholz MJ, Petersen JR.

J Clin Microbiol. 2018 Feb 22;56(3). pii: e01310-17. doi: 10.1128/JCM.01310-17. Print 2018 Mar.


Comprehensive Genomic Profiling of Malignant Effusions in Patients with Metastatic Lung Adenocarcinoma.

Yang SR, Lin CY, Stehr H, Long SR, Kong CS, Berry GJ, Zehnder JL, Kunder CA.

J Mol Diagn. 2018 Mar;20(2):184-194. doi: 10.1016/j.jmoldx.2017.10.007. Epub 2017 Dec 19.


Inhibition of JAK-STAT Signaling Suppresses Pathogenic Immune Responses in Medium and Large Vessel Vasculitis.

Zhang H, Watanabe R, Berry GJ, Tian L, Goronzy JJ, Weyand CM.

Circulation. 2018 May 1;137(18):1934-1948. doi: 10.1161/CIRCULATIONAHA.117.030423. Epub 2017 Dec 18.


Association of Omics Features with Histopathology Patterns in Lung Adenocarcinoma.

Yu KH, Berry GJ, Rubin DL, Ré C, Altman RB, Snyder M.

Cell Syst. 2017 Dec 27;5(6):620-627.e3. doi: 10.1016/j.cels.2017.10.014. Epub 2017 Nov 15.


Anaplastic Lymphoma Kinase Testing: IHC vs. FISH vs. NGS.

Niu X, Chuang JC, Berry GJ, Wakelee HA.

Curr Treat Options Oncol. 2017 Nov 16;18(12):71. doi: 10.1007/s11864-017-0513-x. Review.


Primary mammary analogue secretory carcinoma of the lung: a case report.

Huang T, McHugh JB, Berry GJ, Myers JL.

Hum Pathol. 2018 Apr;74:109-113. doi: 10.1016/j.humpath.2017.10.027. Epub 2017 Nov 2.


Refractory Giant Cell Arteritis Complicated by Vision Loss From Optic Atrophy and Maculopathy Associated With Pachymeningitis.

Uribe JA, Aggarwal I, Witthayaweerasak J, Liao YJ, Berry GJ, Sab UK, Weyand CM.

J Neuroophthalmol. 2018 Mar;38(1):17-23. doi: 10.1097/WNO.0000000000000566. Review.


Features and Outcomes of Methamphetamine-associated Pulmonary Arterial Hypertension.

Zamanian RT, Hedlin H, Greuenwald P, Wilson DM, Segal JI, Jorden M, Kudelko K, Liu J, Hsi A, Rupp A, Sweatt AJ, Tuder R, Berry GJ, Rabinovitch M, Doyle RL, de Jesus Perez V, Kawut SM.

Am J Respir Crit Care Med. 2018 Mar 15;197(6):788-800. doi: 10.1164/rccm.201705-0943OC.


The immunoinhibitory PD-1/PD-L1 pathway in inflammatory blood vessel disease.

Weyand CM, Berry GJ, Goronzy JJ.

J Leukoc Biol. 2018 Mar;103(3):565-575. doi: 10.1189/jlb.3MA0717-283. Epub 2017 Dec 29. Review.


Pulmonary Adenocarcinoma with Enteric Differentiation Presenting with Bronchorrhea.

Prakobkit R, Churk-Nam Auyeung W, Xu L, Berry GJ.

J Thorac Oncol. 2017 Aug;12(8):e120-e123. doi: 10.1016/j.jtho.2017.04.005. No abstract available.


Non-Small Cell Lung Cancer Radiogenomics Map Identifies Relationships between Molecular and Imaging Phenotypes with Prognostic Implications.

Zhou M, Leung A, Echegaray S, Gentles A, Shrager JB, Jensen KC, Berry GJ, Plevritis SK, Rubin DL, Napel S, Gevaert O.

Radiology. 2018 Jan;286(1):307-315. doi: 10.1148/radiol.2017161845. Epub 2017 Jul 20.


Pyruvate controls the checkpoint inhibitor PD-L1 and suppresses T cell immunity.

Watanabe R, Shirai T, Namkoong H, Zhang H, Berry GJ, Wallis BB, Schaefgen B, Harrison DG, Tremmel JA, Giacomini JC, Goronzy JJ, Weyand CM.

J Clin Invest. 2017 Jun 30;127(7):2725-2738. doi: 10.1172/JCI92167. Epub 2017 Jun 12.


Spectral Doppler Waveforms for Diagnosis of Appendicitis: Potential Utility of Point Peak Systolic Velocity and Resistive Index Values.

Shin LK, Jeffrey RB, Berry GJ, Olcott EW.

Radiology. 2017 Dec;285(3):990-998. doi: 10.1148/radiol.2017162251. Epub 2017 Jun 5.


Predictive radiogenomics modeling of EGFR mutation status in lung cancer.

Gevaert O, Echegaray S, Khuong A, Hoang CD, Shrager JB, Jensen KC, Berry GJ, Guo HH, Lau C, Plevritis SK, Rubin DL, Napel S, Leung AN.

Sci Rep. 2017 Jan 31;7:41674. doi: 10.1038/srep41674.


Immunoinhibitory checkpoint deficiency in medium and large vessel vasculitis.

Zhang H, Watanabe R, Berry GJ, Vaglio A, Liao YJ, Warrington KJ, Goronzy JJ, Weyand CM.

Proc Natl Acad Sci U S A. 2017 Feb 7;114(6):E970-E979. doi: 10.1073/pnas.1616848114. Epub 2017 Jan 23.


The XIIIth Banff Conference on Allograft Pathology: The Banff 2015 Heart Meeting Report: Improving Antibody-Mediated Rejection Diagnostics: Strengths, Unmet Needs, and Future Directions.

Bruneval P, Angelini A, Miller D, Potena L, Loupy A, Zeevi A, Reed EF, Dragun D, Reinsmoen N, Smith RN, West L, Tebutt S, Thum T, Haas M, Mengel M, Revelo P, Fedrigo M, Duong Van Huyen JP, Berry GJ.

Am J Transplant. 2017 Jan;17(1):42-53. doi: 10.1111/ajt.14112. Epub 2016 Dec 12.


Use of Treponemal Screening Assay Strength of Signal to Avoid Unnecessary Confirmatory Testing.

Berry GJ, Loeffelholz MJ.

Sex Transm Dis. 2016 Dec;43(12):737-740.


Predicting non-small cell lung cancer prognosis by fully automated microscopic pathology image features.

Yu KH, Zhang C, Berry GJ, Altman RB, Ré C, Rubin DL, Snyder M.

Nat Commun. 2016 Aug 16;7:12474. doi: 10.1038/ncomms12474.


Design and rationale of a prospective, multi-institutional registry for patients with sinonasal malignancy.

Beswick DM, Holsinger FC, Kaplan MJ, Fischbein NJ, Hara W, Colevas AD, Le QT, Berry GJ, Hwang PH.

Laryngoscope. 2016 Sep;126(9):1977-80. doi: 10.1002/lary.25996. Epub 2016 Jun 10.


Antibody-mediated rejection of the lung: A consensus report of the International Society for Heart and Lung Transplantation.

Levine DJ, Glanville AR, Aboyoun C, Belperio J, Benden C, Berry GJ, Hachem R, Hayes D Jr, Neil D, Reinsmoen NL, Snyder LD, Sweet S, Tyan D, Verleden G, Westall G, Yusen RD, Zamora M, Zeevi A.

J Heart Lung Transplant. 2016 Apr;35(4):397-406. doi: 10.1016/j.healun.2016.01.1223. Epub 2016 Feb 10. Review.


Banff study of pathologic changes in lung allograft biopsy specimens with donor-specific antibodies.

Wallace WD, Li N, Andersen CB, Arrossi AV, Askar M, Berry GJ, DeNicola MM, Neil DA, Pavlisko EN, Reed EF, Remmelink M, Weigt SS, Weynand B, Zhang JQ, Budev MM, Farver CF.

J Heart Lung Transplant. 2016 Jan;35(1):40-8. doi: 10.1016/j.healun.2015.08.021. Epub 2015 Sep 25.


Identifying type 1 diabetes candidate genes by DNA microarray analysis of islet-specific CD4 + T cells.

Berry GJ, Frielle C, Brucklacher RM, Salzberg AC, Waldner H.

Genom Data. 2015 Jun 14;5:184-8. doi: 10.1016/j.gdata.2015.05.041. eCollection 2015 Sep.


Idelalisib-associated Enterocolitis: Clinicopathologic Features and Distinction From Other Enterocolitides.

Louie CY, DiMaio MA, Matsukuma KE, Coutre SE, Berry GJ, Longacre TA.

Am J Surg Pathol. 2015 Dec;39(12):1653-60. doi: 10.1097/PAS.0000000000000525.


Inflammatory Pseudotumors of the Skull Base: Meta-Analysis.

Alyono JC, Shi Y, Berry GJ, Recht LD, Harsh GR 4th, Jackler RK, Corrales CE.

Otol Neurotol. 2015 Sep;36(8):1432-8. doi: 10.1097/MAO.0000000000000818.


An Investigation into Laboratory Misidentification of a Bloodstream Klebsiella variicola Infection.

Berry GJ, Loeffelholz MJ, Williams-Bouyer N.

J Clin Microbiol. 2015 Aug;53(8):2793-4. doi: 10.1128/JCM.00841-15. Epub 2015 Jun 10. No abstract available.


Genome-wide transcriptional analyses of islet-specific CD4+ T cells identify Idd9 genes controlling diabetogenic T cell function.

Berry GJ, Frielle C, Luu T, Salzberg AC, Rainbow DB, Wicker LS, Waldner H.

J Immunol. 2015 Mar 15;194(6):2654-63. doi: 10.4049/jimmunol.1401288. Epub 2015 Feb 11.


A critical role for the mTORC2 pathway in lung fibrosis.

Chang W, Wei K, Ho L, Berry GJ, Jacobs SS, Chang CH, Rosen GD.

PLoS One. 2014 Aug 27;9(8):e106155. doi: 10.1371/journal.pone.0106155. eCollection 2014.


Hodgkin lymphoma following adalimumab for the treatment of Crohn's disease in an adolescent.

Rodriguez AA, Kerner J, Luna-Fineman S, Berry GJ.

Dig Dis Sci. 2014 Oct;59(10):2403-5. doi: 10.1007/s10620-014-3191-6. No abstract available.


The type 1 diabetes resistance locus B10 Idd9.3 mediates impaired B-cell lymphopoiesis and implicates microRNA-34a in diabetes protection.

Berry GJ, Budgeon LR, Cooper TK, Christensen ND, Waldner H.

Eur J Immunol. 2014 Jun;44(6):1716-27. doi: 10.1002/eji.201344116. Epub 2014 Apr 29.


Molecular assessment of surgical-resection margins of gastric cancer by mass-spectrometric imaging.

Eberlin LS, Tibshirani RJ, Zhang J, Longacre TA, Berry GJ, Bingham DB, Norton JA, Zare RN, Poultsides GA.

Proc Natl Acad Sci U S A. 2014 Feb 18;111(7):2436-41. doi: 10.1073/pnas.1400274111. Epub 2014 Feb 3.


The 2013 International Society for Heart and Lung Transplantation Working Formulation for the standardization of nomenclature in the pathologic diagnosis of antibody-mediated rejection in heart transplantation.

Berry GJ, Burke MM, Andersen C, Bruneval P, Fedrigo M, Fishbein MC, Goddard M, Hammond EH, Leone O, Marboe C, Miller D, Neil D, Rassl D, Revelo MP, Rice A, Rene Rodriguez E, Stewart S, Tan CD, Winters GL, West L, Mehra MR, Angelini A.

J Heart Lung Transplant. 2013 Dec;32(12):1147-62. doi: 10.1016/j.healun.2013.08.011.


Endothelial fate mapping in mice with pulmonary hypertension.

Qiao L, Nishimura T, Shi L, Sessions D, Thrasher A, Trudell JR, Berry GJ, Pearl RG, Kao PN.

Circulation. 2014 Feb 11;129(6):692-703. doi: 10.1161/CIRCULATIONAHA.113.003734. Epub 2013 Nov 7.


Orthotopic heart transplantation in two infants with histiocytoid cardiomyopathy and left ventricular non-compaction.

Siehr SL, Bernstein D, Yeh J, Berry GJ, Rosenthal DN, Hollander SA.

Pediatr Transplant. 2013 Nov;17(7):E165-7. doi: 10.1111/petr.12141.


Classic biphasic pulmonary blastoma demonstrated by 18F-FDG PET/CT.

Keu KV, Berry GJ, Quon A.

Clin Nucl Med. 2014 Apr;39(4):346-8. doi: 10.1097/RLU.0b013e31828e987c.


Antibody-mediated rejection of the cardiac allograft: where do we stand in 2012?

Berry GJ.

Curr Opin Organ Transplant. 2012 Jun;17(3):303-8. doi: 10.1097/MOT.0b013e328353660f. Review.


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