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Using the difference in actual and expected calf live-weight relative to its dam live-weight as a statistic for inter- and intra-herd benchmarking and genetic evaluations.

McHugh N, Evans RD, Berry DP.

J Anim Sci. 2019 Oct 19. pii: skz331. doi: 10.1093/jas/skz331. [Epub ahead of print]


Population structure and breed composition prediction in a multi-breed sheep population using genome-wide single nucleotide polymorphism genotypes.

O'Brien AC, Purfield DC, Judge MM, Long C, Fair S, Berry DP.

Animal. 2019 Oct 15:1-11. doi: 10.1017/S1751731119002398. [Epub ahead of print]


Feed efficiency and carcass metrics in growing cattle1.

Kelly DN, Murphy C, Sleator RD, Judge MM, Conroy SB, Berry DP.

J Anim Sci. 2019 Nov 4;97(11):4405-4417. doi: 10.1093/jas/skz316.


Associations between colostrum management, passive immunity, calf-related hygiene practices, and rates of mortality in preweaning dairy calves.

Barry J, Bokkers EAM, Berry DP, de Boer IJM, McClure J, Kennedy E.

J Dairy Sci. 2019 Nov;102(11):10266-10276. doi: 10.3168/jds.2019-16815. Epub 2019 Sep 11.


A breeding index to rank beef bulls for use on dairy females to maximize profit.

Berry DP, Amer PR, Evans RD, Byrne T, Cromie AR, Hely F.

J Dairy Sci. 2019 Nov;102(11):10056-10072. doi: 10.3168/jds.2019-16912. Epub 2019 Sep 5.


Hepatic Resection Following Selective Internal Radiation Therapy for Colorectal Cancer Metastases in the FOXFIRE Clinical Trial: Clinical Outcomes and Distribution of Microspheres.

Winter H, Rassam J, Virdee PS, Goldin R, Pitcheshwar P, Weaver K, Primrose J, Berry DP, Wasan HS, Sharma RA.

Cancers (Basel). 2019 Aug 12;11(8). pii: E1155. doi: 10.3390/cancers11081155.


A large interactive visual database of copy number variants discovered in taurine cattle.

Kommadath A, Grant JR, Krivushin K, Butty AM, Baes CF, Carthy TR, Berry DP, Stothard P.

Gigascience. 2019 Jun 1;8(6). pii: giz073. doi: 10.1093/gigascience/giz073.


A mating advice system in dairy cattle incorporating genomic information.

Carthy TR, McCarthy J, Berry DP.

J Dairy Sci. 2019 Sep;102(9):8210-8220. doi: 10.3168/jds.2019-16283. Epub 2019 Jun 20.


Porcine Feed Efficiency-Associated Intestinal Microbiota and Physiological Traits: Finding Consistent Cross-Locational Biomarkers for Residual Feed Intake.

McCormack UM, Curião T, Metzler-Zebeli BU, Magowan E, Berry DP, Reyer H, Prieto ML, Buzoianu SG, Harrison M, Rebeiz N, Crispie F, Cotter PD, O'Sullivan O, Gardiner GE, Lawlor PG.

mSystems. 2019 Jun 18;4(4). pii: e00324-18. doi: 10.1128/mSystems.00324-18.


Linear classification scores in beef cattle as predictors of genetic merit for individual carcass primal cut yields1.

Berry DP, Pabiou T, Fanning R, Evans RD, Judge MM.

J Anim Sci. 2019 May 30;97(6):2329-2341. doi: 10.1093/jas/skz138.


Potential exists to change, through breeding, the yield of individual primal carcass cuts in cattle without increasing overall carcass weight1.

Judge MM, Pabiou T, Murphy J, Conroy SB, Hegarty PJ, Berry DP.

J Anim Sci. 2019 Jul 2;97(7):2769-2779. doi: 10.1093/jas/skz152.


Genome-wide association study of endo-parasite phenotypes using imputed whole-genome sequence data in dairy and beef cattle.

Twomey AJ, Berry DP, Evans RD, Doherty ML, Graham DA, Purfield DC.

Genet Sel Evol. 2019 Apr 18;51(1):15. doi: 10.1186/s12711-019-0457-7.


How herd best linear unbiased estimates affect the progress achievable from gains in additive and nonadditive genetic merit.

Dunne FL, McParland S, Kelleher MM, Walsh SW, Berry DP.

J Dairy Sci. 2019 Jun;102(6):5295-5304. doi: 10.3168/jds.2018-16119. Epub 2019 Apr 10.


Candidate genes associated with the heritable humoral response to Mycobacterium avium ssp. paratuberculosis in dairy cows have factors in common with gastrointestinal diseases in humans.

McGovern SP, Purfield DC, Ring SC, Carthy TR, Graham DA, Berry DP.

J Dairy Sci. 2019 May;102(5):4249-4263. doi: 10.3168/jds.2018-15906. Epub 2019 Mar 7.


Dressing percentage and the differential between live weight and carcass weight in cattle are influenced by both genetic and non-genetic factors1.

Coyne JM, Evans RD, Berry DP.

J Anim Sci. 2019 Apr 3;97(4):1501-1512. doi: 10.1093/jas/skz056.


Variance components for bovine tuberculosis infection and multi-breed genome-wide association analysis using imputed whole genome sequence data.

Ring SC, Purfield DC, Good M, Breslin P, Ryan E, Blom A, Evans RD, Doherty ML, Bradley DG, Berry DP.

PLoS One. 2019 Feb 14;14(2):e0212067. doi: 10.1371/journal.pone.0212067. eCollection 2019.


High imputation accuracy from informative low-to-medium density single nucleotide polymorphism genotypes is achievable in sheep1.

O'Brien AC, Judge MM, Fair S, Berry DP.

J Anim Sci. 2019 Apr 3;97(4):1550-1567. doi: 10.1093/jas/skz043.


Review: New considerations to refine breeding objectives of dairy cows for increasing robustness and sustainability of grass-based milk production systems.

Roche JR, Berry DP, Delaby L, Dillon PG, Horan B, Macdonald KA, Neal M.

Animal. 2018 Dec;12(s2):s350-s362. doi: 10.1017/S1751731118002471. Epub 2018 Nov 13. Review.


Genetic parameters for variability in the birth of persistently infected cattle following likely in utero exposure to bovine viral diarrhea virus.

Ring SC, Graham DA, Kelleher MM, Doherty ML, Berry DP.

J Anim Sci. 2019 Feb 1;97(2):559-568. doi: 10.1093/jas/sky430.


Genetics of bull semen characteristics in a multi-breed cattle population.

Berry DP, Eivers B, Dunne G, McParland S.

Theriogenology. 2019 Jan 1;123:202-208. doi: 10.1016/j.theriogenology.2018.10.006. Epub 2018 Oct 5.


Carcass characteristics of cattle differing in Jersey proportion.

Berry DP, Judge MJ, Evans RD, Buckley F, Cromie AR.

J Dairy Sci. 2018 Dec;101(12):11052-11060. doi: 10.3168/jds.2018-14992. Epub 2018 Sep 27.


Characterization of copy number variants in a large multibreed population of beef and dairy cattle using high-density single nucleotide polymorphism genotype data.

Rafter P, Purfield DC, Berry DP, Parnell AC, Gormley IC, Kearney JF, Coffey MP, Carthy TR.

J Anim Sci. 2018 Sep 29;96(10):4112-4124. doi: 10.1093/jas/sky302.


Genetic selection for hoof health traits and cow mobility scores can accelerate the rate of genetic gain in producer-scored lameness in dairy cows.

Ring SC, Twomey AJ, Byrne N, Kelleher MM, Pabiou T, Doherty ML, Berry DP.

J Dairy Sci. 2018 Nov;101(11):10034-10047. doi: 10.3168/jds.2018-15009. Epub 2018 Sep 13.


Mean difference in live-weight per incremental difference in body condition score estimated in multiple sheep breeds and crossbreds.

McHugh N, McGovern F, Creighton P, Pabiou T, McDermott K, Wall E, Berry DP.

Animal. 2019 Mar;13(3):549-553. doi: 10.1017/S1751731118002148. Epub 2018 Aug 17.


An association analysis of sow parity, live-weight and back-fat depth as indicators of sow productivity.

Lavery A, Lawlor PG, Magowan E, Miller HM, O'Driscoll K, Berry DP.

Animal. 2019 Mar;13(3):622-630. doi: 10.1017/S1751731118001799. Epub 2018 Jul 18.


Genetic (co)variances between milk mineral concentration and chemical composition in lactating Holstein-Friesian dairy cows.

Visentin G, Niero G, Berry DP, Costa A, Cassandro M, De Marchi M, Penasa M.

Animal. 2019 Mar;13(3):477-486. doi: 10.1017/S1751731118001507. Epub 2018 Jul 6.


Characterization of best linear unbiased estimates generated from national genetic evaluations of reproductive performance, survival, and milk yield in dairy cows.

Dunne FL, Kelleher MM, Walsh SW, Berry DP.

J Dairy Sci. 2018 Aug;101(8):7625-7637. doi: 10.3168/jds.2018-14529. Epub 2018 May 16.


Genetic variability in the humoral immune response to bovine herpesvirus-1 infection in dairy cattle and genetic correlations with performance traits.

Ring SC, Graham DA, Sayers RG, Byrne N, Kelleher MM, Doherty ML, Berry DP.

J Dairy Sci. 2018 Jul;101(7):6190-6204. doi: 10.3168/jds.2018-14481. Epub 2018 Apr 26.


Genetic covariance components within and among linear type traits differ among contrasting beef cattle breeds.

Doyle JL, Berry DP, Walsh SW, Veerkamp RF, Evans RD, Carthy TR.

J Anim Sci. 2018 May 4;96(5):1628-1639. doi: 10.1093/jas/sky076.


A novel measure of ewe efficiency for breeding and benchmarking purposes.

McHugh N, Pabiou T, McDermott K, Wall E, Berry DP.

J Anim Sci. 2018 Jun 4;96(6):2051-2059. doi: 10.1093/jas/sky143.


Little genetic variability in resilience among cattle exists for a range of performance traits across herds in Ireland differing in Fasciola hepatica prevalence.

Twomey AJ, Graham DA, Doherty ML, Blom A, Berry DP.

J Anim Sci. 2018 Jun 4;96(6):2099-2112. doi: 10.1093/jas/sky108.


Heritability estimates of meat sensory characteristics are a function of the number of panellists and their inter-correlations.

Judge MM, Conroy S, Pabiou T, Cromie AR, Berry DP.

Meat Sci. 2018 Jul;141:91-93. doi: 10.1016/j.meatsci.2018.03.023. Epub 2018 Mar 27.


Milk mid-infrared spectral data as a tool to predict feed intake in lactating Norwegian Red dairy cows.

Wallén SE, Prestløkken E, Meuwissen THE, McParland S, Berry DP.

J Dairy Sci. 2018 Jul;101(7):6232-6243. doi: 10.3168/jds.2017-13874. Epub 2018 Mar 28.


Aneuploidy in dizygotic twin sheep detected using genome-wide single nucleotide polymorphism data from two commonly used commercial vendors.

Berry DP, O'Brien A, O'Donovan J, McHugh N, Wall E, Randles S, McDermott K, O'Connor RE, Patil MA, Ho J, Kennedy A, Byrne N, Purfield DC.

Animal. 2018 Dec;12(12):2462-2469. doi: 10.1017/S1751731118000204. Epub 2018 Mar 15.


Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals.

Bouwman AC, Daetwyler HD, Chamberlain AJ, Ponce CH, Sargolzaei M, Schenkel FS, Sahana G, Govignon-Gion A, Boitard S, Dolezal M, Pausch H, Brøndum RF, Bowman PJ, Thomsen B, Guldbrandtsen B, Lund MS, Servin B, Garrick DJ, Reecy J, Vilkki J, Bagnato A, Wang M, Hoff JL, Schnabel RD, Taylor JF, Vinkhuyzen AAE, Panitz F, Bendixen C, Holm LE, Gredler B, Hozé C, Boussaha M, Sanchez MP, Rocha D, Capitan A, Tribout T, Barbat A, Croiseau P, Drögemüller C, Jagannathan V, Vander Jagt C, Crowley JJ, Bieber A, Purfield DC, Berry DP, Emmerling R, Götz KU, Frischknecht M, Russ I, Sölkner J, Van Tassell CP, Fries R, Stothard P, Veerkamp RF, Boichard D, Goddard ME, Hayes BJ.

Nat Genet. 2018 Mar;50(3):362-367. doi: 10.1038/s41588-018-0056-5. Epub 2018 Feb 19.


Risk factors associated with animal mortality in pasture-based, seasonal-calving dairy and beef herds.

Ring SC, McCarthy J, Kelleher MM, Doherty ML, Berry DP.

J Anim Sci. 2018 Feb 15;96(1):35-55. doi: 10.1093/jas/skx072.


Genetic correlations between endo-parasite phenotypes and economically important traits in dairy and beef cattle.

Twomey AJ, Carroll RI, Doherty ML, Byrne N, Graham DA, Sayers RG, Blom A, Berry DP.

J Anim Sci. 2018 Mar 6;96(2):407-421. doi: 10.1093/jas/sky008.


Symposium review: Breeding a better cow-Will she be adaptable?

Berry DP.

J Dairy Sci. 2018 Apr;101(4):3665-3685. doi: 10.3168/jds.2017-13309. Epub 2017 Dec 8. Review.


Isolating the cow-specific part of residual energy intake in lactating dairy cows using random regressions.

Fischer A, Friggens NC, Berry DP, Faverdin P.

Animal. 2018 Jul;12(7):1396-1404. doi: 10.1017/S1751731117003214. Epub 2017 Dec 11.


The effect of non-steroidal anti-inflammatory drugs on severity of acute pancreatitis and pancreatic necrosis.

Baxter KA, Pucher PH, Berry DP, Elberm H, Abu-Hilal M, Marangoni G, Hamady Z.

Ann R Coll Surg Engl. 2018 Mar;100(3):199-202. doi: 10.1308/rcsann.2017.0205. Epub 2017 Nov 28.


Characteristics of feed efficiency within and across lactation in dairy cows and the effect of genetic selection.

Hurley AM, Lopez-Villalobos N, McParland S, Lewis E, Kennedy E, O'Donovan M, Burke JL, Berry DP.

J Dairy Sci. 2018 Feb;101(2):1267-1280. doi: 10.3168/jds.2017-12841. Epub 2017 Nov 23.


A 100-Year Review: A century of change in temperate grazing dairy systems.

Roche JR, Berry DP, Bryant AM, Burke CR, Butler ST, Dillon PG, Donaghy DJ, Horan B, Macdonald KA, Macmillan KL.

J Dairy Sci. 2017 Dec;100(12):10189-10233. doi: 10.3168/jds.2017-13182. Review.


Rapid Communication: Large exploitable genetic variability exists to shorten age at slaughter in cattle.

Berry DP, Cromie AR, Judge MM.

J Anim Sci. 2017 Oct;95(10):4526-4532. doi: 10.2527/jas2017.2016.


Genetic co-variance functions for live weight, feed intake, and efficiency measures in growing pigs.

Coyne JM, Berry DP, Matilainen K, Sevon-Aimonen ML, Mantysaari EA, Juga J, Serenius T, McHugh N.

J Anim Sci. 2017 Sep;95(9):3822-3832. doi: 10.2527/jas2017.1408.


Nationwide prospective audit of pancreatic surgery: design, accuracy, and outcomes of the Dutch Pancreatic Cancer Audit.

van Rijssen LB, Koerkamp BG, Zwart MJ, Bonsing BA, Bosscha K, van Dam RM, van Eijck CH, Gerhards MF, van der Harst E, de Hingh IH, de Jong KP, Kazemier G, Klaase J, van Laarhoven CJ, Molenaar IQ, Patijn GA, Rupert CG, van Santvoort HC, Scheepers JJ, van der Schelling GP, Busch OR, Besselink MG; Dutch Pancreatic Cancer Group.

HPB (Oxford). 2017 Oct;19(10):919-926. doi: 10.1016/j.hpb.2017.06.010. Epub 2017 Jul 26.


Feed efficiency metrics in growing pigs.

Calderón Díaz JA, Berry DP, Rebeiz N, Metzler-Zebeli BU, Magowan E, Gardiner GE, Lawlor PG.

J Anim Sci. 2017 Jul;95(7):3037-3046. doi: 10.2527/jas.2017.1554.


Impact of alternative definitions of contemporary groups on genetic evaluations of traits recorded at lambing.

McHugh N, Pabiou T, Wall E, McDermott K, Berry DP.

J Anim Sci. 2017 May;95(5):1926-1938. doi: 10.2527/jas.2016.1344.


Imputation of non-genotyped sheep from the genotypes of their mates and resulting progeny.

Berry DP, McHugh N, Randles S, Wall E, McDermott K, Sargolzaei M, O'Brien AC.

Animal. 2018 Feb;12(2):191-198. doi: 10.1017/S1751731117001653. Epub 2017 Jul 17.


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