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Macrophage-Derived IL1β and TNFα Regulate Arginine Metabolism in Neuroblastoma.

Fultang L, Gamble LD, Gneo L, Berry AM, Egan SA, De Bie F, Yogev O, Eden GL, Booth S, Brownhill S, Vardon A, McConville CM, Cheng PN, Norris MD, Etchevers HC, Murray J, Ziegler DS, Chesler L, Schmidt R, Burchill SA, Haber M, De Santo C, Mussai F.

Cancer Res. 2019 Feb 1;79(3):611-624. doi: 10.1158/0008-5472.CAN-18-2139. Epub 2018 Dec 13.


Comparative Analysis of the Nodule Transcriptomes of Ceanothus thyrsiflorus (Rhamnaceae, Rosales) and Datisca glomerata (Datiscaceae, Cucurbitales).

Salgado MG, van Velzen R, Nguyen TV, Battenberg K, Berry AM, Lundin D, Pawlowski K.

Front Plant Sci. 2018 Nov 14;9:1629. doi: 10.3389/fpls.2018.01629. eCollection 2018.


Distinctive Patterns of Flavonoid Biosynthesis in Roots and Nodules of Datisca glomerata and Medicago spp. Revealed by Metabolomic and Gene Expression Profiles.

Gifford I, Battenberg K, Vaniya A, Wilson A, Tian L, Fiehn O, Berry AM.

Front Plant Sci. 2018 Oct 10;9:1463. doi: 10.3389/fpls.2018.01463. eCollection 2018.


Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota.

Van Deynze A, Zamora P, Delaux PM, Heitmann C, Jayaraman D, Rajasekar S, Graham D, Maeda J, Gibson D, Schwartz KD, Berry AM, Bhatnagar S, Jospin G, Darling A, Jeannotte R, Lopez J, Weimer BC, Eisen JA, Shapiro HY, Ané JM, Bennett AB.

PLoS Biol. 2018 Aug 7;16(8):e2006352. doi: 10.1371/journal.pbio.2006352. eCollection 2018 Aug.


Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis.

Griesmann M, Chang Y, Liu X, Song Y, Haberer G, Crook MB, Billault-Penneteau B, Lauressergues D, Keller J, Imanishi L, Roswanjaya YP, Kohlen W, Pujic P, Battenberg K, Alloisio N, Liang Y, Hilhorst H, Salgado MG, Hocher V, Gherbi H, Svistoonoff S, Doyle JJ, He S, Xu Y, Xu S, Qu J, Gao Q, Fang X, Fu Y, Normand P, Berry AM, Wall LG, Ané JM, Pawlowski K, Xu X, Yang H, Spannagl M, Mayer KFX, Wong GK, Parniske M, Delaux PM, Cheng S.

Science. 2018 Jul 13;361(6398). pii: eaat1743. doi: 10.1126/science.aat1743. Epub 2018 May 24.


Proposal of 'Candidatus Frankia californiensis', the uncultured symbiont in nitrogen-fixing root nodules of a phylogenetically broad group of hosts endemic to western North America.

Normand P, Nguyen TV, Battenberg K, Berry AM, Heuvel BV, Fernandez MP, Pawlowski K.

Int J Syst Evol Microbiol. 2017 Oct;67(10):3706-3715. doi: 10.1099/ijsem.0.002147. Epub 2017 Sep 8.


OrthoReD: a rapid and accurate orthology prediction tool with low computational requirement.

Battenberg K, Lee EK, Chiu JC, Berry AM, Potter D.

BMC Bioinformatics. 2017 Jun 21;18(1):310. doi: 10.1186/s12859-017-1726-5.


The Influence of the Host Plant Is the Major Ecological Determinant of the Presence of Nitrogen-Fixing Root Nodule Symbiont Cluster II Frankia Species in Soil.

Battenberg K, Wren JA, Hillman J, Edwards J, Huang L, Berry AM.

Appl Environ Microbiol. 2016 Dec 15;83(1). pii: e02661-16. Print 2017 Jan 1.


An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodH.

Nguyen TV, Wibberg D, Battenberg K, Blom J, Vanden Heuvel B, Berry AM, Kalinowski J, Pawlowski K.

BMC Genomics. 2016 Oct 12;17(1):796.


Potential mechanisms underlying ectodermal differentiation of Wharton's jelly mesenchymal stem cells.

Jadalannagari S, Berry AM, Hopkins RA, Bhavsar D, Aljitawi OS.

Biochem Biophys Res Commun. 2016 Sep 16;478(2):831-7. doi: 10.1016/j.bbrc.2016.08.033. Epub 2016 Aug 5.


Candidatus Frankia Datiscae Dg1, the Actinobacterial Microsymbiont of Datisca glomerata, Expresses the Canonical nod Genes nodABC in Symbiosis with Its Host Plant.

Persson T, Battenberg K, Demina IV, Vigil-Stenman T, Vanden Heuvel B, Pujic P, Facciotti MT, Wilbanks EG, O'Brien A, Fournier P, Cruz Hernandez MA, Mendoza Herrera A, Médigue C, Normand P, Pawlowski K, Berry AM.

PLoS One. 2015 May 28;10(5):e0127630. doi: 10.1371/journal.pone.0127630. eCollection 2015.


Gut microbiome in sudden infant death syndrome (SIDS) differs from that in healthy comparison babies and offers an explanation for the risk factor of prone position.

Highet AR, Berry AM, Bettelheim KA, Goldwater PN.

Int J Med Microbiol. 2014 Jul;304(5-6):735-41. doi: 10.1016/j.ijmm.2014.05.007. Epub 2014 May 29.


In vivo magnetic resonance spectroscopy detection of combined glutamate-glutamine in healthy upper cervical cord at 3 T.

Solanky BS, Abdel-Aziz K, Yiannakas MC, Berry AM, Ciccarelli O, Wheeler-Kingshott CA.

NMR Biomed. 2013 Mar;26(3):357-66. doi: 10.1002/nbm.2867. Epub 2012 Dec 28.


Genome sequence of "Candidatus Frankia datiscae" Dg1, the uncultured microsymbiont from nitrogen-fixing root nodules of the dicot Datisca glomerata.

Persson T, Benson DR, Normand P, Vanden Heuvel B, Pujic P, Chertkov O, Teshima H, Bruce DC, Detter C, Tapia R, Han S, Han J, Woyke T, Pitluck S, Pennacchio L, Nolan M, Ivanova N, Pati A, Land ML, Pawlowski K, Berry AM.

J Bacteriol. 2011 Dec;193(24):7017-8. doi: 10.1128/JB.06208-11.


Consensus based clinical guideline for oral hygiene in the critically ill.

Berry AM, Davidson PM, Nicholson L, Pasqualotto C, Rolls K.

Intensive Crit Care Nurs. 2011 Aug;27(4):180-5. doi: 10.1016/j.iccn.2011.04.005.


Effects of phenolic monomers on growth of Acidothermus cellulolyticus.

Joh LD, Rezaei F, Barabote RD, Parales JV, Parales RE, Berry AM, Vandergheynst JS.

Biotechnol Prog. 2011 Jan-Feb;27(1):23-31. doi: 10.1002/btpr.525. Epub 2010 Dec 22.


Effects of three approaches to standardized oral hygiene to reduce bacterial colonization and ventilator associated pneumonia in mechanically ventilated patients: a randomised control trial.

Berry AM, Davidson PM, Masters J, Rolls K, Ollerton R.

Int J Nurs Stud. 2011 Jun;48(6):681-8. doi: 10.1016/j.ijnurstu.2010.11.004. Epub 2010 Dec 24.


Xyn10A, a thermostable endoxylanase from Acidothermus cellulolyticus 11B.

Barabote RD, Parales JV, Guo YY, Labavitch JM, Parales RE, Berry AM.

Appl Environ Microbiol. 2010 Nov;76(21):7363-6. doi: 10.1128/AEM.01326-10. Epub 2010 Sep 17.


A method for measuring the cross sectional area of the anterior portion of the optic nerve in vivo using a fast 3D MRI sequence.

Yiannakas MC, Wheeler-Kingshott CA, Berry AM, Chappell K, Henderson A, Kolappan M, Miller DH, Tozer DJ.

J Magn Reson Imaging. 2010 Jun;31(6):1486-91. doi: 10.1002/jmri.22202.


Switchgrass leaching requirements for solid-state fermentation by Acidothermus cellulolyticus.

VanderGheynst JS, Rezaei F, Dooley TM, Berry AM.

Biotechnol Prog. 2010 May-Jun;26(3):622-6. doi: 10.1002/btpr.366.


Morbidity of open retroperitoneal lymph node dissection for testicular cancer: contemporary perioperative data.

Williams SB, McDermott DW, Winston D, Bahnson E, Berry AM, Steele GS, Richie JP.

BJU Int. 2010 Apr;105(7):918-21. doi: 10.1111/j.1464-410X.2009.08888.x. Epub 2009 Aug 28.


Novel hypothesis for unexplained sudden unexpected death in infancy (SUDI).

Highet AR, Berry AM, Goldwater PN.

Arch Dis Child. 2009 Nov;94(11):841-3. doi: 10.1136/adc.2009.158352. Epub 2009 May 3. Review.


Retroperitoneal lymph node dissection in patients with high risk testicular cancer.

Williams SB, McDermott DW, Dock W, Bahnson E, Berry AM, Steele GS, Richie JP.

J Urol. 2009 May;181(5):2097-101; discussion 2101-2. doi: 10.1016/j.juro.2009.01.026. Epub 2009 Mar 14.


Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations.

Barabote RD, Xie G, Leu DH, Normand P, Necsulea A, Daubin V, Médigue C, Adney WS, Xu XC, Lapidus A, Parales RE, Detter C, Pujic P, Bruce D, Lavire C, Challacombe JF, Brettin TS, Berry AM.

Genome Res. 2009 Jun;19(6):1033-43. doi: 10.1101/gr.084848.108. Epub 2009 Mar 6.


Surgical apgar outcome score: perioperative risk assessment for radical cystectomy.

Prasad SM, Ferreria M, Berry AM, Lipsitz SR, Richie JP, Gawande AA, Hu JC.

J Urol. 2009 Mar;181(3):1046-52; discussion 1052-3. doi: 10.1016/j.juro.2008.10.165. Epub 2009 Jan 15.


Robotic urethrovesical anastomosis: combining running and interrupted sutures.

Berry AM, Korkes F, Ferreira M, Hu JC.

J Endourol. 2008 Sep;22(9):2127-9. doi: 10.1089/end.2008.0099. No abstract available.


On the nature of fur evolution: a phylogenetic approach in Actinobacteria.

Santos CL, Vieira J, Tavares F, Benson DR, Tisa LS, Berry AM, Moradas-Ferreira P, Normand P.

BMC Evol Biol. 2008 Jun 25;8:185. doi: 10.1186/1471-2148-8-185.


Fractured penis: a review.

Sawh SL, O'Leary MP, Ferreira MD, Berry AM, Maharaj D.

Int J Impot Res. 2008 Jul-Aug;20(4):366-9. doi: 10.1038/ijir.2008.12. Epub 2008 Apr 17. Review.


Systematic literature review of oral hygiene practices for intensive care patients receiving mechanical ventilation.

Berry AM, Davidson PM, Masters J, Rolls K.

Am J Crit Care. 2007 Nov;16(6):552-62; quiz 563. Review.


Truncated hemoglobins in actinorhizal nodules of Datisca glomerata.

Pawlowski K, Jacobsen KR, Alloisio N, Ford Denison R, Klein M, Tjepkema JD, Winzer T, Sirrenberg A, Guan C, Berry AM.

Plant Biol (Stuttg). 2007 Nov;9(6):776-85. Epub 2007 Aug 7.


Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography.

Normand P, Lapierre P, Tisa LS, Gogarten JP, Alloisio N, Bagnarol E, Bassi CA, Berry AM, Bickhart DM, Choisne N, Couloux A, Cournoyer B, Cruveiller S, Daubin V, Demange N, Francino MP, Goltsman E, Huang Y, Kopp OR, Labarre L, Lapidus A, Lavire C, Marechal J, Martinez M, Mastronunzio JE, Mullin BC, Niemann J, Pujic P, Rawnsley T, Rouy Z, Schenowitz C, Sellstedt A, Tavares F, Tomkins JP, Vallenet D, Valverde C, Wall LG, Wang Y, Medigue C, Benson DR.

Genome Res. 2007 Jan;17(1):7-15. Epub 2006 Dec 6.


Molecular basis of cellular localization of poly C binding protein 1 in neuronal cells.

Berry AM, Flock KE, Loh HH, Ko JL.

Biochem Biophys Res Commun. 2006 Nov 3;349(4):1378-86. Epub 2006 Sep 12.


Beyond comfort: oral hygiene as a critical nursing activity in the intensive care unit.

Berry AM, Davidson PM.

Intensive Crit Care Nurs. 2006 Dec;22(6):318-28. Epub 2006 Jun 27. Review.


Vascular endothelial growth factor: a therapeutic target for tumors of the Ewing's sarcoma family.

Dalal S, Berry AM, Cullinane CJ, Mangham DC, Grimer R, Lewis IJ, Johnston C, Laurence V, Burchill SA.

Clin Cancer Res. 2005 Mar 15;11(6):2364-78.


Novel expression pattern of cytosolic Gln synthetase in nitrogen-fixing root nodules of the actinorhizal host, Datisca glomerata.

Berry AM, Murphy TM, Okubara PA, Jacobsen KR, Swensen SM, Pawlowski K.

Plant Physiol. 2004 Jul;135(3):1849-62. Epub 2004 Jul 9.


Distinct patterns of symbiosis-related gene expression in actinorhizal nodules from different plant families.

Pawlowski K, Swensen S, Guan C, Hadri AE, Berry AM, Bisseling T.

Mol Plant Microbe Interact. 2003 Sep;16(9):796-807.


Hopanoid lipids in Frankia: identification of squalene-hopene cyclase gene sequences.

Dobritsa SV, Potter D, Gookin TE, Berry AM.

Can J Microbiol. 2001 Jun;47(6):535-40.


High hopanoid/total lipids ratio in Frankia mycelia is not related to the nitrogen status.

Nalin R, Putra SR, Domenach AM, Rohmer M, Gourbiere F, Berry AM.

Microbiology. 2000 Nov;146 ( Pt 11):3013-9.


Genetic characterization of vanG, a novel vancomycin resistance locus of Enterococcus faecalis.

McKessar SJ, Berry AM, Bell JM, Turnidge JD, Paton JC.

Antimicrob Agents Chemother. 2000 Nov;44(11):3224-8.


Dg93, a nodule-abundant mRNA of Datisca glomerata with homology to a soybean early nodulin gene.

Okubara PA, Fujishige NA, Hirsch AM, Berry AM.

Plant Physiol. 2000 Apr;122(4):1073-9.


Symbiotic root nodules of the actinorhizal plant Datisca glomerata express Rubisco activase mRNA.

Okubara PA, Pawlowski K, Murphy TM, Berry AM.

Plant Physiol. 1999 Jun;120(2):411-20.


Penicillin tolerance in Streptococcus pneumoniae, autolysis and the Psa ATP-binding cassette (ABC) manganese permease.

Claverys JP, Granadel C, Berry AM, Paton JC.

Mol Microbiol. 1999 May;32(4):881-3. No abstract available.


Expression, purification and preliminary X-ray crystallographic analysis of PsaA, a putative metal-transporter protein of Streptococcus pneumoniae.

Pilling PA, Lawrence MC, Berry AM, Ogunniyi AD, Lock RA, Paton JC.

Acta Crystallogr D Biol Crystallogr. 1998 Nov 1;54(Pt 6 Pt 2):1464-6.


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