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Items: 36

1.

Minimal Interspecies Interaction Adjustment (MIIA): Inference of Neighbor-Dependent Interactions in Microbial Communities.

Song HS, Lee JY, Haruta S, Nelson WC, Lee DY, Lindemann SR, Fredrickson JK, Bernstein HC.

Front Microbiol. 2019 Jun 11;10:1264. doi: 10.3389/fmicb.2019.01264. eCollection 2019.

2.

EcoFABs: advancing microbiome science through standardized fabricated ecosystems.

Zengler K, Hofmockel K, Baliga NS, Behie SW, Bernstein HC, Brown JB, Dinneny JR, Floge SA, Forry SP, Hess M, Jackson SA, Jansson C, Lindemann SR, Pett-Ridge J, Maranas C, Venturelli OS, Wallenstein MD, Shank EA, Northen TR.

Nat Methods. 2019 Jul;16(7):567-571. doi: 10.1038/s41592-019-0465-0. No abstract available.

3.

Reconciling Ecological and Engineering Design Principles for Building Microbiomes.

Bernstein HC.

mSystems. 2019 May 28;4(3). pii: e00106-19. doi: 10.1128/mSystems.00106-19.

4.

Selection, Succession, and Stabilization of Soil Microbial Consortia.

Zegeye EK, Brislawn CJ, Farris Y, Fansler SJ, Hofmockel KS, Jansson JK, Wright AT, Graham EB, Naylor D, McClure RS, Bernstein HC.

mSystems. 2019 May 14;4(4). pii: e00055-19. doi: 10.1128/mSystems.00055-19.

5.

Selection, Succession, and Stabilization of Soil Microbial Consortia.

Zegeye EK, Brislawn CJ, Farris Y, Fansler SJ, Hofmockel KS, Jansson JK, Wright AT, Graham EB, Naylor D, McClure RS, Bernstein HC.

mSystems. 2019 May 14;4(4). pii: e00055-19. doi: 10.1128/mSystems.00055-19. eCollection 2019 Jul-Aug.

6.

Forfeiting the priority effect: turnover defines biofilm community succession.

Brislawn CJ, Graham EB, Dana K, Ihardt P, Fansler SJ, Chrisler WB, Cliff JB, Stegen JC, Moran JJ, Bernstein HC.

ISME J. 2019 Jul;13(7):1865-1877. doi: 10.1038/s41396-019-0396-x. Epub 2019 Mar 18.

PMID:
30886318
7.

Species-specific transcriptomic network inference of interspecies interactions.

McClure RS, Overall CC, Hill EA, Song HS, Charania M, Bernstein HC, McDermott JE, Beliaev AS.

ISME J. 2018 Aug;12(8):2011-2023. doi: 10.1038/s41396-018-0145-6. Epub 2018 May 24.

8.

Phenotypic responses to interspecies competition and commensalism in a naturally-derived microbial co-culture.

Khan N, Maezato Y, McClure RS, Brislawn CJ, Mobberley JM, Isern N, Chrisler WB, Markillie LM, Barney BM, Song HS, Nelson WC, Bernstein HC.

Sci Rep. 2018 Jan 10;8(1):297. doi: 10.1038/s41598-017-18630-1.

9.

Primary and heterotrophic productivity relate to multikingdom diversity in a hypersaline mat.

Bernstein HC, Brislawn CJ, Dana K, Flores-Wentz T, Cory AB, Fansler SJ, Fredrickson JK, Moran JJ.

FEMS Microbiol Ecol. 2017 Oct 1;93(10). doi: 10.1093/femsec/fix121.

10.

Organismal and spatial partitioning of energy and macronutrient transformations within a hypersaline mat.

Mobberley JM, Lindemann SR, Bernstein HC, Moran JJ, Renslow RS, Babauta J, Hu D, Beyenal H, Nelson WC.

FEMS Microbiol Ecol. 2017 Apr 1;93(4). doi: 10.1093/femsec/fix028.

11.

Indirect Interspecies Regulation: Transcriptional and Physiological Responses of a Cyanobacterium to Heterotrophic Partnership.

Bernstein HC, McClure RS, Thiel V, Sadler NC, Kim YM, Chrisler WB, Hill EA, Bryant DA, Romine MF, Jansson JK, Fredrickson JK, Beliaev AS.

mSystems. 2017 Mar 7;2(2). pii: e00181-16. doi: 10.1128/mSystems.00181-16. eCollection 2017 Mar-Apr.

12.

A flexible microbial co-culture platform for simultaneous utilization of methane and carbon dioxide from gas feedstocks.

Hill EA, Chrisler WB, Beliaev AS, Bernstein HC.

Bioresour Technol. 2017 Mar;228:250-256. doi: 10.1016/j.biortech.2016.12.111. Epub 2017 Jan 3.

13.

Trade-offs between microbiome diversity and productivity in a stratified microbial mat.

Bernstein HC, Brislawn C, Renslow RS, Dana K, Morton B, Lindemann SR, Song HS, Atci E, Beyenal H, Fredrickson JK, Jansson JK, Moran JJ.

ISME J. 2017 Feb;11(2):405-414. doi: 10.1038/ismej.2016.133. Epub 2016 Nov 1.

14.

Dinitrogenase-Driven Photobiological Hydrogen Production Combats Oxidative Stress in Cyanothece sp. Strain ATCC 51142.

Sadler NC, Bernstein HC, Melnicki MR, Charania MA, Hill EA, Anderson LN, Monroe ME, Smith RD, Beliaev AS, Wright AT.

Appl Environ Microbiol. 2016 Nov 21;82(24):7227-7235. Print 2016 Dec 15.

15.

Unlocking the Constraints of Cyanobacterial Productivity: Acclimations Enabling Ultrafast Growth.

Bernstein HC, McClure RS, Hill EA, Markillie LM, Chrisler WB, Romine MF, McDermott JE, Posewitz MC, Bryant DA, Konopka AE, Fredrickson JK, Beliaev AS.

MBio. 2016 Jul 26;7(4). pii: e00949-16. doi: 10.1128/mBio.00949-16.

16.

Microbial Community Metabolic Modeling: A Community Data-Driven Network Reconstruction.

Henry CS, Bernstein HC, Weisenhorn P, Taylor RC, Lee JY, Zucker J, Song HS.

J Cell Physiol. 2016 Nov;231(11):2339-45. doi: 10.1002/jcp.25428. Epub 2016 Jun 2.

17.

Engineering microbial consortia for controllable outputs.

Lindemann SR, Bernstein HC, Song HS, Fredrickson JK, Fields MW, Shou W, Johnson DR, Beliaev AS.

ISME J. 2016 Sep;10(9):2077-84. doi: 10.1038/ismej.2016.26. Epub 2016 Mar 11.

18.

Assembly and Succession of Iron Oxide Microbial Mat Communities in Acidic Geothermal Springs.

Beam JP, Bernstein HC, Jay ZJ, Kozubal MA, Jennings Rd, Tringe SG, Inskeep WP.

Front Microbiol. 2016 Feb 15;7:25. doi: 10.3389/fmicb.2016.00025. eCollection 2016.

19.

Microsensor and transcriptomic signatures of oxygen depletion in biofilms associated with chronic wounds.

James GA, Ge Zhao A, Usui M, Underwood RA, Nguyen H, Beyenal H, deLancey Pulcini E, Agostinho Hunt A, Bernstein HC, Fleckman P, Olerud J, Williamson KS, Franklin MJ, Stewart PS.

Wound Repair Regen. 2016 Mar;24(2):373-83. doi: 10.1111/wrr.12401. Epub 2016 Feb 16.

20.

Multi-Omic Dynamics Associate Oxygenic Photosynthesis with Nitrogenase-Mediated H2 Production in Cyanothece sp. ATCC 51142.

Bernstein HC, Charania MA, McClure RS, Sadler NC, Melnicki MR, Hill EA, Markillie LM, Nicora CD, Wright AT, Romine MF, Beliaev AS.

Sci Rep. 2015 Nov 3;5:16004. doi: 10.1038/srep16004.

21.

Integrated in silico Analyses of Regulatory and Metabolic Networks of Synechococcus sp. PCC 7002 Reveal Relationships between Gene Centrality and Essentiality.

Song HS, McClure RS, Bernstein HC, Overall CC, Hill EA, Beliaev AS.

Life (Basel). 2015 Mar 27;5(2):1127-40. doi: 10.3390/life5021127.

22.

Effect of mono- and dichromatic light quality on growth rates and photosynthetic performance of Synechococcus sp. PCC 7002.

Bernstein HC, Konopka A, Melnicki MR, Hill EA, Kucek LA, Zhang S, Shen G, Bryant DA, Beliaev AS.

Front Microbiol. 2014 Sep 19;5:488. doi: 10.3389/fmicb.2014.00488. eCollection 2014.

23.

Spatially tracking (13) C-labelled substrate (bicarbonate) accumulation in microbial communities using laser ablation isotope ratio mass spectrometry.

Moran JJ, Doll CG, Bernstein HC, Renslow RS, Cory AB, Hutchison JR, Lindemann SR, Fredrickson JK.

Environ Microbiol Rep. 2014 Dec;6(6):786-91. doi: 10.1111/1758-2229.12211. Epub 2014 Oct 27.

PMID:
25155264
24.

Design, construction, and characterization methodologies for synthetic microbial consortia.

Bernstein HC, Carlson RP.

Methods Mol Biol. 2014;1151:49-68. doi: 10.1007/978-1-4939-0554-6_4.

PMID:
24838878
25.

Inference of interactions in cyanobacterial-heterotrophic co-cultures via transcriptome sequencing.

Beliaev AS, Romine MF, Serres M, Bernstein HC, Linggi BE, Markillie LM, Isern NG, Chrisler WB, Kucek LA, Hill EA, Pinchuk GE, Bryant DA, Wiley HS, Fredrickson JK, Konopka A.

ISME J. 2014 Nov;8(11):2243-55. doi: 10.1038/ismej.2014.69. Epub 2014 Apr 29.

26.

Direct measurement and characterization of active photosynthesis zones inside wastewater remediating and biofuel producing microalgal biofilms.

Bernstein HC, Kesaano M, Moll K, Smith T, Gerlach R, Carlson RP, Miller CD, Peyton BM, Cooksey KE, Gardner RD, Sims RC.

Bioresour Technol. 2014 Mar;156:206-15. doi: 10.1016/j.biortech.2014.01.001. Epub 2014 Jan 10.

PMID:
24508901
27.

Differentiation of microbial species and strains in coculture biofilms by multivariate analysis of laser desorption postionization mass spectra.

Bhardwaj C, Cui Y, Hofstetter T, Liu SY, Bernstein HC, Carlson RP, Ahmed M, Hanley L.

Analyst. 2013 Nov 21;138(22):6844-51. doi: 10.1039/c3an01389h.

28.

In situ analysis of oxygen consumption and diffusive transport in high-temperature acidic iron-oxide microbial mats.

Bernstein HC, Beam JP, Kozubal MA, Carlson RP, Inskeep WP.

Environ Microbiol. 2013 Aug;15(8):2360-70. doi: 10.1111/1462-2920.12109. Epub 2013 Mar 21.

PMID:
23516993
29.

Iron induces bimodal population development by Escherichia coli.

DePas WH, Hufnagel DA, Lee JS, Blanco LP, Bernstein HC, Fisher ST, James GA, Stewart PS, Chapman MR.

Proc Natl Acad Sci U S A. 2013 Feb 12;110(7):2629-34. doi: 10.1073/pnas.1218703110. Epub 2013 Jan 28.

30.

Laser desorption VUV postionization MS imaging of a cocultured biofilm.

Bhardwaj C, Moore JF, Cui Y, Gasper GL, Bernstein HC, Carlson RP, Hanley L.

Anal Bioanal Chem. 2013 Sep;405(22):6969-77. doi: 10.1007/s00216-012-6454-0. Epub 2012 Oct 6.

31.

Microbial Consortia Engineering for Cellular Factories: in vitro to in silico systems.

Bernstein HC, Carlson RP.

Comput Struct Biotechnol J. 2012 Dec 1;3:e201210017. doi: 10.5936/csbj.201210017. eCollection 2012. Review.

32.

Synthetic Escherichia coli consortia engineered for syntrophy demonstrate enhanced biomass productivity.

Bernstein HC, Paulson SD, Carlson RP.

J Biotechnol. 2012 Jan;157(1):159-66. doi: 10.1016/j.jbiotec.2011.10.001. Epub 2011 Oct 12.

33.

Infertility among the ancients.

BERNSTEIN A, BERNSTEIN HC.

J Int Coll Surg. 1956 May;25(5):656-61. No abstract available.

PMID:
13319802
34.

Metastasis to the heart from carcinoma of the breast; report of a case.

BERNSTEIN A, BERNSTEIN HC, ELIASER M.

J Int Coll Surg. 1955 Oct;24(4 Part 1):393-9. No abstract available.

PMID:
13271783
35.

Medicine in the Talmud.

BERNSTEIN A, BERNSTEIN HC.

Calif Med. 1951 Apr;74(4):267-8. No abstract available.

36.

Report of two cases of primary ovarian pregnancy with review of literature.

BERNSTEIN A, BERNSTEIN HC.

West J Surg Obstet Gynecol. 1948 Dec;56(12):627-33. No abstract available.

PMID:
18102785

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