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Items: 1 to 50 of 357

1.

Atypical organizations and epistatic interactions of CRISPRs and cas clusters in genomes and their mobile genetic elements.

Bernheim A, Bikard D, Touchon M, Rocha EPC.

Nucleic Acids Res. 2019 Nov 20. pii: gkz1091. doi: 10.1093/nar/gkz1091. [Epub ahead of print]

PMID:
31745554
2.

The pan-immune system of bacteria: antiviral defence as a community resource.

Bernheim A, Sorek R.

Nat Rev Microbiol. 2019 Nov 6. doi: 10.1038/s41579-019-0278-2. [Epub ahead of print] Review.

PMID:
31695182
3.

Erratum to: Increasing Number and Volume of Cavitary Lesions on Chest Computed Tomography Are Associated With Prolonged Time to Culture Conversion in Pulmonary Tuberculosis.

Hernandez-Romieu AC, Little BP, Bernheim A, Schechter MC, Ray SM, Bizune D, Kempker R.

Open Forum Infect Dis. 2019 Oct 25;6(10):ofz443. doi: 10.1093/ofid/ofz443. eCollection 2019 Oct.

4.

Methods for the Analysis and Characterization of Defense Mechanisms Against Horizontal Gene Transfer: CRISPR Systems.

Calvo-Villamañán A, Bernheim A, Bikard D.

Methods Mol Biol. 2020;2075:235-249. doi: 10.1007/978-1-4939-9877-7_17.

PMID:
31584167
5.

Increasing Number and Volume of Cavitary Lesions on Chest Computed Tomography Are Associated With Prolonged Time to Culture Conversion in Pulmonary Tuberculosis.

Hernandez-Romieu AC, Little BP, Bernheim A, Schechter MC, Ray SM, Bizune D, Kempker R.

Open Forum Infect Dis. 2019 Jun 24;6(6):ofz232. doi: 10.1093/ofid/ofz232. eCollection 2019 Jun. Erratum in: Open Forum Infect Dis. 2019 Oct 25;6(10):ofz443.

6.

Introducing ILD-RADS: A Pilot Study of an Interstitial Lung Disease Standardized Reporting Template.

Berkowitz EA, Bernheim A, Little BP.

J Am Coll Radiol. 2019 Sep;16(9 Pt A):1169-1172. doi: 10.1016/j.jacr.2019.02.032. Epub 2019 May 6. No abstract available.

PMID:
31072773
7.

A matter of background: DNA repair pathways as a possible cause for the sparse distribution of CRISPR-Cas systems in bacteria.

Bernheim A, Bikard D, Touchon M, Rocha EPC.

Philos Trans R Soc Lond B Biol Sci. 2019 May 13;374(1772):20180088. doi: 10.1098/rstb.2018.0088.

8.

Genetic exchanges are more frequent in bacteria encoding capsules.

Rendueles O, de Sousa JAM, Bernheim A, Touchon M, Rocha EPC.

PLoS Genet. 2018 Dec 21;14(12):e1007862. doi: 10.1371/journal.pgen.1007862. eCollection 2018 Dec.

9.

Gender differences in patient and system delay for primary percutaneous coronary intervention: current trends in a Swiss ST-segment elevation myocardial infarction population.

Meyer MR, Bernheim AM, Kurz DJ, O'Sullivan CJ, Tüller D, Zbinden R, Rosemann T, Eberli FR.

Eur Heart J Acute Cardiovasc Care. 2019 Apr;8(3):283-290. doi: 10.1177/2048872618810410. Epub 2018 Nov 8.

PMID:
30406673
10.

Evaluation of Incidental Cardiac Masses on Computed Tomography Imaging: An Algorithmic Approach.

Bernheim A, Gore A, Goyal N.

J Thorac Imaging. 2019 Jan;34(1):W1-W9. doi: 10.1097/RTI.0000000000000371. Review.

PMID:
30376480
11.

Viruses cooperate to defeat bacteria.

Bernheim A, Sorek R.

Nature. 2018 Jul;559(7715):482-484. doi: 10.1038/d41586-018-05762-1. No abstract available.

PMID:
30038344
12.

Screening For Pulmonary Hypertension With Multidetector Computed Tomography Among Patients With Severe Aortic Stenosis Undergoing Transcatheter Aortic Valve Implantation.

O'Sullivan CJ, Montalbetti M, Zbinden R, Kurz DJ, Bernheim AM, Liew A, Meyer MR, Tüller D, Eberli FR.

Front Cardiovasc Med. 2018 Jun 5;5:63. doi: 10.3389/fcvm.2018.00063. eCollection 2018.

13.

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins.

Couvin D, Bernheim A, Toffano-Nioche C, Touchon M, Michalik J, Néron B, Rocha EPC, Vergnaud G, Gautheret D, Pourcel C.

Nucleic Acids Res. 2018 Jul 2;46(W1):W246-W251. doi: 10.1093/nar/gky425.

14.

Fluorodeoxyglucose positron emission tomography for detection of tumor recurrence following radiofrequency ablation in retrospective cohort of stage I lung cancer.

Wang Y, Lanuti M, Bernheim A, Shepard JO, Sharma A.

Int J Hyperthermia. 2018;35(1):1-8. doi: 10.1080/02656736.2018.1466369. Epub 2018 May 3.

PMID:
29719997
15.

A comparison of linezolid lung tissue concentrations among patients with drug-resistant tuberculosis.

Kempker RR, Heinrichs MT, Nikolaishvili K, Sabulua I, Bablishvili N, Gogishvili S, Avaliani Z, Little BP, Bernheim A, Derendorf H, Blumberg HM, Vashakidze S, Peloquin CA.

Eur Respir J. 2018 Feb 7;51(2). pii: 1702166. doi: 10.1183/13993003.02166-2017. Print 2018 Feb. No abstract available.

16.

Inhibition of NHEJ repair by type II-A CRISPR-Cas systems in bacteria.

Bernheim A, Calvo-Villamañán A, Basier C, Cui L, Rocha EPC, Touchon M, Bikard D.

Nat Commun. 2017 Dec 12;8(1):2094. doi: 10.1038/s41467-017-02350-1.

17.

Moxifloxacin target site concentrations in patients with pulmonary TB utilizing microdialysis: a clinical pharmacokinetic study.

Heinrichs MT, Vashakidze S, Nikolaishvili K, Sabulua I, Tukvadze N, Bablishvili N, Gogishvili S, Little BP, Bernheim A, Guarner J, Peloquin CA, Blumberg HM, Derendorf H, Kempker RR.

J Antimicrob Chemother. 2018 Feb 1;73(2):477-483. doi: 10.1093/jac/dkx421.

18.

Antagonism of mGlu2/3 receptors in the nucleus accumbens prevents oxytocin from reducing cued methamphetamine seeking in male and female rats.

Bernheim A, Leong KC, Berini C, Reichel CM.

Pharmacol Biochem Behav. 2017 Oct;161:13-21. doi: 10.1016/j.pbb.2017.08.012. Epub 2017 Sep 1.

19.

Intramural haematoma and delayed ischaemia of a non-target vessel following percutaneous coronary intervention: insights from optical coherence tomography.

O'Sullivan CJ, Bernheim AM, Eberli FR.

Acta Cardiol. 2018 Jun;73(3):305-306. doi: 10.1080/00015385.2017.1366613. Epub 2017 Aug 22. No abstract available.

PMID:
28826316
20.

Brief History of Lung Cancer Screening Including the National Lung Screening Trial.

Fintelmann FJ, Bernheim A, McLoud TC.

Semin Roentgenol. 2017 Jul;52(3):125-128. doi: 10.1053/j.ro.2017.06.006. Epub 2017 Jun 3. Review. No abstract available.

PMID:
28734392
21.

Lung Tissue Concentrations of Pyrazinamide among Patients with Drug-Resistant Pulmonary Tuberculosis.

Kempker RR, Heinrichs MT, Nikolaishvili K, Sabulua I, Bablishvili N, Gogishvili S, Avaliani Z, Tukvadze N, Little B, Bernheim A, Read TD, Guarner J, Derendorf H, Peloquin CA, Blumberg HM, Vashakidze S.

Antimicrob Agents Chemother. 2017 May 24;61(6). pii: e00226-17. doi: 10.1128/AAC.00226-17. Print 2017 Jun.

22.

Heart failure with mid-range ejection fraction: a distinct clinical entity? Insights from the Trial of Intensified versus standard Medical therapy in Elderly patients with Congestive Heart Failure (TIME-CHF).

Rickenbacher P, Kaufmann BA, Maeder MT, Bernheim A, Goetschalckx K, Pfister O, Pfisterer M, Brunner-La Rocca HP; TIME-CHF Investigators.

Eur J Heart Fail. 2017 Dec;19(12):1586-1596. doi: 10.1002/ejhf.798. Epub 2017 Mar 15.

23.

A Review of Clinical and Imaging Findings in Eosinophilic Lung Diseases.

Bernheim A, McLoud T.

AJR Am J Roentgenol. 2017 May;208(5):1002-1010. doi: 10.2214/AJR.16.17315. Epub 2017 Feb 22. Review.

PMID:
28225641
24.

[Why so rare if so essentiel: the determinants of the sparse distribution of CRISPR-Cas systems in bacterial genomes].

Bernheim A.

Biol Aujourdhui. 2017;211(4):255-264. doi: 10.1051/jbio/2018005. Epub 2018 Jun 29. Review. French.

PMID:
29956652
25.

Efficacy and safety of transcatheter closure in adults with large or small atrial septal defects.

Meyer MR, Kurz DJ, Bernheim AM, Kretschmar O, Eberli FR.

Springerplus. 2016 Oct 21;5(1):1841. eCollection 2016.

26.

Genetic and life-history traits associated with the distribution of prophages in bacteria.

Touchon M, Bernheim A, Rocha EP.

ISME J. 2016 Nov;10(11):2744-2754. doi: 10.1038/ismej.2016.47. Epub 2016 Mar 25.

27.

The Dubious Value of Coronary Calcium Scoring on Lung Cancer Screening CT.

Bernheim A, Auffermann WF, Stillman AE.

J Am Coll Radiol. 2017 Mar;14(3):343-344. doi: 10.1016/j.jacr.2016.08.011. Epub 2016 Oct 4. No abstract available.

PMID:
27717578
28.

A Eukaryotic-like Serine/Threonine Kinase Protects Staphylococci against Phages.

Depardieu F, Didier JP, Bernheim A, Sherlock A, Molina H, Duclos B, Bikard D.

Cell Host Microbe. 2016 Oct 12;20(4):471-481. doi: 10.1016/j.chom.2016.08.010. Epub 2016 Sep 22.

29.

Chronic methamphetamine self-administration disrupts cortical control of cognition.

Bernheim A, See RE, Reichel CM.

Neurosci Biobehav Rev. 2016 Oct;69:36-48. doi: 10.1016/j.neubiorev.2016.07.020. Epub 2016 Jul 20. Review.

30.

Paradoxical embolism via a sinus venosus atrial septal defect causing an inferior ST-segment elevation myocardial infarction in a 23-year-old woman.

O'Sullivan CJ, Magarzo JG, Bernheim AM, Robert Eberli F.

BMJ Case Rep. 2016 Apr 29;2016. pii: bcr2016215184. doi: 10.1136/bcr-2016-215184.

31.

Phage-mediated Delivery of Targeted sRNA Constructs to Knock Down Gene Expression in E. coli.

Bernheim AG, Libis VK, Lindner AB, Wintermute EH.

J Vis Exp. 2016 Mar 20;(109). doi: 10.3791/53618.

32.

The 10 Pillars of Lung Cancer Screening: Rationale and Logistics of a Lung Cancer Screening Program.

Fintelmann FJ, Bernheim A, Digumarthy SR, Lennes IT, Kalra MK, Gilman MD, Sharma A, Flores EJ, Muse VV, Shepard JA.

Radiographics. 2015 Nov-Dec;35(7):1893-908. doi: 10.1148/rg.2015150079. Epub 2015 Oct 23. Review.

PMID:
26495797
33.

Improved outcomes of elderly patients treated with drug-eluting versus bare metal stents in large coronary arteries: results from the BAsel Stent Kosten-Effektivitäts Trial PROspective Validation Examination randomized trial.

Kurz DJ, Bernheim AM, Tüller D, Zbinden R, Jeger R, Kaiser C, Galatius S, Hansen KW, Alber H, Pfisterer M, Eberli FR.

Am Heart J. 2015 Oct;170(4):787-795.e1. doi: 10.1016/j.ahj.2015.07.009. Epub 2015 Jul 17.

PMID:
26386803
34.

[Cardiovascular assessment and management before non-cardiac surgery].

Schwarz S, Bernheim AM.

Praxis (Bern 1994). 2015 May 6;104(10):503-9. doi: 10.1024/1661-8157/a002000. German.

PMID:
26098052
35.

Improvement in left ventricular ejection fraction and reverse remodeling in elderly heart failure patients on intense NT-proBNP-guided therapy.

Kaufmann BA, Goetschalckx K, Min SY, Maeder MT, Bucher U, Nietlispach F, Bernheim AM, Pfisterer ME, Brunner-La Rocca HP; TIME-CHF investigators.

Int J Cardiol. 2015 Jul 15;191:286-93. doi: 10.1016/j.ijcard.2015.04.282. Epub 2015 May 2.

PMID:
25981371
36.

Guidelines for cytogenetic investigations in tumours.

Hastings RJ, Bown N, Tibiletti MG, Debiec-Rychter M, Vanni R, Espinet B, van Roy N, Roberts P, van den Berg-de-Ruiter E, Bernheim A, Schoumans J, Chatters S, Zemanova Z, Stevens-Kroef M, Simons A, Heim S, Salido M, Ylstra B, Betts DR; Tumour Best Practice meeting; Eurogentest.

Eur J Hum Genet. 2016 Jan;24(1):6-13. doi: 10.1038/ejhg.2015.35. Epub 2015 Mar 25. No abstract available.

37.

Comparison of prasugrel and clopidogrel-treated patients with acute coronary syndrome undergoing percutaneous coronary intervention: A propensity score-matched analysis of the Acute Myocardial Infarction in Switzerland (AMIS)-Plus Registry.

Kurz DJ, Radovanovic D, Seifert B, Bernheim AM, Roffi M, Pedrazzini G, Windecker S, Erne P, Eberli FR.

Eur Heart J Acute Cardiovasc Care. 2016 Feb;5(1):13-22. doi: 10.1177/2048872614566946. Epub 2015 Jan 22.

PMID:
25614494
38.

Authors' reply.

Studer Bruengger AA, Kaufmann BA, Bernheim AM.

J Am Soc Echocardiogr. 2015 Mar;28(3):377. doi: 10.1016/j.echo.2014.12.010. Epub 2015 Jan 15. No abstract available.

PMID:
25600035
39.

Silencing of antibiotic resistance in E. coli with engineered phage bearing small regulatory RNAs.

Libis VK, Bernheim AG, Basier C, Jaramillo-Riveri S, Deyell M, Aghoghogbe I, Atanaskovic I, Bencherif AC, Benony M, Koutsoubelis N, Löchner AC, Marinkovic ZS, Zahra S, Zegman Y, Lindner AB, Wintermute EH.

ACS Synth Biol. 2014 Dec 19;3(12):1003-6. doi: 10.1021/sb500033d.

PMID:
25524110
40.

Radiology of cardiac devices and their complications.

Dipoce J, Bernheim A, Spindola-Franco H.

Br J Radiol. 2015 Feb;88(1046):20140540. doi: 10.1259/bjr.20140540. Epub 2014 Nov 20. Review.

41.

In situ characterization of mycobacterial growth inhibition by lytic enzymes expressed in vectorized E. coli.

Atanaskovic I, Bencherif AC, Deyell M, Jaramillo-Riveri S, Benony M, Bernheim AG, Libis VK, Koutsoubelis N, Zegman Y, Löchner AC, Basier C, Aghoghogbe I, Marinkovic ZS, Zahra S, Toulouze M, Lindner AB, Wintermute EH.

ACS Synth Biol. 2014 Dec 19;3(12):932-4. doi: 10.1021/sb500039z. Epub 2014 Dec 11.

PMID:
25408994
42.

Genome-wide microarray expression and genomic alterations by array-CGH analysis in neuroblastoma stem-like cells.

Ordóñez R, Gallo-Oller G, Martínez-Soto S, Legarra S, Pata-Merci N, Guegan J, Danglot G, Bernheim A, Meléndez B, Rey JA, Castresana JS.

PLoS One. 2014 Nov 13;9(11):e113105. doi: 10.1371/journal.pone.0113105. eCollection 2014.

43.

Diastolic stress echocardiography in the young: a study in nonathletic and endurance-trained healthy subjects.

Studer Bruengger AA, Kaufmann BA, Buser M, Hoffmann M, Bader F, Bernheim AM.

J Am Soc Echocardiogr. 2014 Oct;27(10):1053-9. doi: 10.1016/j.echo.2014.06.016. Epub 2014 Jul 30.

PMID:
25087079
44.

[Anonymous sperm donation does not increase the risk for unions between relatives nor the incidence of autosomal recessive diseases due to consanguinity].

Serre JL, Leutenegger AL, Bernheim A, Fellous M, Rouen A, Kunstmann JM, Hyon C, Siffroi JP.

Gynecol Obstet Fertil. 2014 Apr;42(4):200-4. doi: 10.1016/j.gyobfe.2014.02.005. Epub 2014 Mar 26. French. No abstract available.

PMID:
24679600
45.

No chromosome arm unturned: in memory of Roland Berger 1934-2012.

Harrison CJ, Rowley JD, Van den Berghe H, Bernheim A, Martineau M, Gautier M, Le Coniat-Busson M, Romana S, Dastugue N, Hagemeijer A, Jonveaux P, Nguyen-Khac F, Bernard OA.

Leukemia. 2014 Feb;28(2):464-9: discussion 469. doi: 10.1038/leu.2013.340. No abstract available.

PMID:
24496283
46.

Interaction between pulmonary hypertension and diastolic dysfunction in an elderly heart failure population.

van Empel VP, Kaufmann BA, Bernheim AM, Goetschalckx K, Min SY, Muzzarelli S, Pfisterer ME, Kiencke S, Maeder MT, Brunner-La Rocca HP.

J Card Fail. 2014 Feb;20(2):98-104. doi: 10.1016/j.cardfail.2013.12.010. Epub 2013 Dec 18.

PMID:
24361805
47.

Controversies about the enhanced vulnerability of the adolescent brain to develop addiction.

Bernheim A, Halfon O, Boutrel B.

Front Pharmacol. 2013 Nov 28;4:118. doi: 10.3389/fphar.2013.00118. Review.

48.

Does anonymous sperm donation increase the risk for unions between relatives and the incidence of autosomal recessive diseases due to consanguinity?

Serre JL, Leutenegger AL, Bernheim A, Fellous M, Rouen A, Siffroi JP.

Hum Reprod. 2014 Mar;29(3):394-9. doi: 10.1093/humrep/det452. Epub 2013 Dec 16.

PMID:
24345578
49.

Right ventricle best predicts the race performance in amateur ironman athletes.

Bernheim AM, Attenhofer Jost CH, Zuber M, Pfyffer M, Seifert B, De Pasquale G, Linka A, Faeh-Gunz A, Medeiros-Domingo A, Knechtle B.

Med Sci Sports Exerc. 2013 Aug;45(8):1593-9. doi: 10.1249/MSS.0b013e31828ba558.

PMID:
23470299
50.

[From karyotype to genome wide selection (GWS) sequencing in Burkitt lymphoma].

Bernheim A, Toujani S, Dessen P.

Ann Pathol. 2012 Nov;32(5 Suppl):S46-7. doi: 10.1016/j.annpat.2012.09.193. Epub 2012 Oct 12. French. No abstract available.

PMID:
23127938

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