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Items: 50

1.

BacTag - a pipeline for fast and accurate gene and allele typing in bacterial sequencing data based on database preprocessing.

Khachatryan L, Kraakman MEM, Bernards AT, Laros JFJ.

BMC Genomics. 2019 May 6;20(1):338. doi: 10.1186/s12864-019-5723-0.

2.

Time to positivity of blood cultures supports early re-evaluation of empiric broad-spectrum antimicrobial therapy.

Lambregts MMC, Bernards AT, van der Beek MT, Visser LG, de Boer MG.

PLoS One. 2019 Jan 2;14(1):e0208819. doi: 10.1371/journal.pone.0208819. eCollection 2019.

3.

Carriage of antibiotic-resistant Gram-negative bacteria after discontinuation of selective decontamination of the digestive tract (SDD) or selective oropharyngeal decontamination (SOD).

de Jonge E, de Wilde RBP, Juffermans NP, Oostdijk EAN, Bernards AT, van Essen EHR, Kuijper EJ, Visser CE, Kesecioglu J, Bonten MJM.

Crit Care. 2018 Sep 29;22(1):243. doi: 10.1186/s13054-018-2170-2.

4.

Re: 'Development of diagnostic prediction tools for bacteraemia caused by 3rd generation cephalosporin-resistant Enterobacteriaceae in suspected bacterial infections' by Rottier, et al.

Lambregts MMC, Bernards AT, Visser LG, de Boer MGJ.

Clin Microbiol Infect. 2018 Dec;24(12):1346-1348. doi: 10.1016/j.cmi.2018.07.019. Epub 2018 Aug 2. No abstract available.

PMID:
30077798
5.

Distribution and clinical determinants of time-to-positivity of blood cultures in patients with neutropenia.

Lambregts MMC, Warreman EB, Bernards AT, Veelken H, von dem Borne PA, Dekkers OM, Visser LG, de Boer MG.

Eur J Haematol. 2018 Feb;100(2):206-214. doi: 10.1111/ejh.13001. Epub 2017 Dec 13.

PMID:
29171916
6.

Notice of Retraction and Replacement: Oostdijk et al. Effects of Decontamination of the Oropharynx and Intestinal Tract on Antibiotic Resistance in ICUs: A Randomized Clinical Trial. JAMA. 2014;312(14):1429-1437.

Oostdijk EAN, Kesecioglu J, Schultz MJ, Visser CE, de Jonge E, van Essen EHR, Bernards AT, Purmer I, Brimicombe R, Bergmans D, van Tiel F, Bosch FH, Mascini E, van Griethuysen A, Bindels A, Jansz A, van Steveninck FAL, van der Zwet WC, Fijen JW, Thijsen S, de Jong R, Oudbier J, Raben A, van der Vorm E, Koeman M, Rothbarth P, Rijkeboer A, Gruteke P, Hart H, Peerbooms P, Winsser LJ, van Elsacker-Niele AW, Demmendaal K, Brandenburg A, de Smet AMGA, Bonten MJM.

JAMA. 2017 Apr 18;317(15):1583-1584. doi: 10.1001/jama.2017.1282. No abstract available.

PMID:
28418487
7.

Effects of decontamination of the oropharynx and intestinal tract on antibiotic resistance in ICUs: a randomized clinical trial.

Oostdijk EAN, Kesecioglu J, Schultz MJ, Visser CE, de Jonge E, van Essen EHR, Bernards AT, Purmer I, Brimicombe R, Bergmans D, van Tiel F, Bosch FH, Mascini E, van Griethuysen A, Bindels A, Jansz A, van Steveninck FAL, van der Zwet WC, Fijen JW, Thijsen S, de Jong R, Oudbier J, Raben A, van der Vorm E, Koeman M, Rothbarth P, Rijkeboer A, Gruteke P, Hart-Sweet H, Peerbooms P, Winsser LJ, van Elsacker-Niele AW, Demmendaal K, Brandenburg A, de Smet AMGA, Bonten MJM.

JAMA. 2014 Oct 8;312(14):1429-1437. doi: 10.1001/jama.2014.7247.

PMID:
25271544
8.

An integrated approach to control a prolonged outbreak of multidrug-resistant Pseudomonas aeruginosa in an intensive care unit.

Knoester M, de Boer MG, Maarleveld JJ, Claas EC, Bernards AT, de Jonge E, van Dissel JT, Veldkamp KE.

Clin Microbiol Infect. 2014 Apr;20(4):O207-15. doi: 10.1111/1469-0691.12372. Epub 2013 Oct 25.

9.

Dutch guidelines for physiotherapy in patients with stress urinary incontinence: an update.

Bernards AT, Berghmans BC, Slieker-Ten Hove MC, Staal JB, de Bie RA, Hendriks EJ.

Int Urogynecol J. 2014 Feb;25(2):171-9. doi: 10.1007/s00192-013-2219-3. Epub 2013 Oct 1. Review.

10.

Exploring the contribution of efflux on the resistance to fluoroquinolones in clinical isolates of Escherichia coli.

Paltansing S, Tengeler AC, Kraakman ME, Claas EC, Bernards AT.

Microb Drug Resist. 2013 Dec;19(6):469-76. doi: 10.1089/mdr.2013.0058. Epub 2013 Aug 2.

PMID:
23909485
11.

Extended-spectrum β-lactamase-producing enterobacteriaceae among travelers from the Netherlands.

Paltansing S, Vlot JA, Kraakman ME, Mesman R, Bruijning ML, Bernards AT, Visser LG, Veldkamp KE.

Emerg Infect Dis. 2013 Aug;19(8):1206-13. doi: 10.3201/eid.1908.130257.

12.

No human transmission of Mycobacterium malmoense in a perfect storm setting.

Hoefsloot W, Boeree MJ, van Nieuwkoop C, Bernards AT, Savelkoul PH, van Ingen J, van Soolingen D.

Eur Respir J. 2012 Dec;40(6):1576-8. doi: 10.1183/09031936.00096312. No abstract available.

13.

Characterization of fluoroquinolone and cephalosporin resistance mechanisms in Enterobacteriaceae isolated in a Dutch teaching hospital reveals the presence of an Escherichia coli ST131 clone with a specific mutation in parE.

Paltansing S, Kraakman ME, Ras JM, Wessels E, Bernards AT.

J Antimicrob Chemother. 2013 Jan;68(1):40-5. doi: 10.1093/jac/dks365. Epub 2012 Sep 18.

PMID:
22991424
14.

Evaluation of several biochemical and molecular techniques for identification of Streptococcus pneumoniae and Streptococcus pseudopneumoniae and their detection in respiratory samples.

Wessels E, Schelfaut JJ, Bernards AT, Claas EC.

J Clin Microbiol. 2012 Apr;50(4):1171-7. doi: 10.1128/JCM.06609-11. Epub 2012 Jan 25.

15.

Selective digestive tract decontamination and selective oropharyngeal decontamination and antibiotic resistance in patients in intensive-care units: an open-label, clustered group-randomised, crossover study.

de Smet AM, Kluytmans JA, Blok HE, Mascini EM, Benus RF, Bernards AT, Kuijper EJ, Leverstein-van Hall MA, Jansz AR, de Jongh BM, van Asselt GJ, Frenay IH, Thijsen SF, Conijn SN, Kaan JA, Arends JP, Sturm PD, Bootsma MC, Bonten MJ.

Lancet Infect Dis. 2011 May;11(5):372-80. doi: 10.1016/S1473-3099(11)70035-4. Epub 2011 Mar 21.

PMID:
21420908
16.

Endemic and epidemic acinetobacter species in a university hospital: an 8-year survey.

van den Broek PJ, van der Reijden TJ, van Strijen E, Helmig-Schurter AV, Bernards AT, Dijkshoorn L.

J Clin Microbiol. 2009 Nov;47(11):3593-9. doi: 10.1128/JCM.00967-09. Epub 2009 Sep 30.

17.

Decontamination of the digestive tract and oropharynx: hospital acquired infections after discharge from the intensive care unit.

de Smet AM, Hopmans TE, Minderhoud AL, Blok HE, Gossink-Franssen A, Bernards AT, Bonten MJ.

Intensive Care Med. 2009 Sep;35(9):1609-13. doi: 10.1007/s00134-009-1554-9. Epub 2009 Jun 24.

18.

Prognostic indicators of poor short-term outcome of physiotherapy intervention in women with stress urinary incontinence.

Hendriks EJ, Kessels AG, de Vet HC, Bernards AT, de Bie RA.

Neurourol Urodyn. 2010 Mar;29(3):336-43. doi: 10.1002/nau.20752.

PMID:
19475574
19.

Do maggots have an influence on bacterial growth? A study on the susceptibility of strains of six different bacterial species to maggots of Lucilia sericata and their excretions/secretions.

Cazander G, van Veen KE, Bernards AT, Jukema GN.

J Tissue Viability. 2009 Aug;18(3):80-7. doi: 10.1016/j.jtv.2009.02.005. Epub 2009 Apr 9.

PMID:
19362001
20.

Negative pressure wound treatment with polyvinyl alcohol foam and polyhexanide antiseptic solution instillation in posttraumatic osteomyelitis.

Timmers MS, Graafland N, Bernards AT, Nelissen RG, van Dissel JT, Jukema GN.

Wound Repair Regen. 2009 Mar-Apr;17(2):278-86. doi: 10.1111/j.1524-475X.2009.00458.x.

PMID:
19320897
21.

Decontamination of the digestive tract and oropharynx in ICU patients.

de Smet AM, Kluytmans JA, Cooper BS, Mascini EM, Benus RF, van der Werf TS, van der Hoeven JG, Pickkers P, Bogaers-Hofman D, van der Meer NJ, Bernards AT, Kuijper EJ, Joore JC, Leverstein-van Hall MA, Bindels AJ, Jansz AR, Wesselink RM, de Jongh BM, Dennesen PJ, van Asselt GJ, te Velde LF, Frenay IH, Kaasjager K, Bosch FH, van Iterson M, Thijsen SF, Kluge GH, Pauw W, de Vries JW, Kaan JA, Arends JP, Aarts LP, Sturm PD, Harinck HI, Voss A, Uijtendaal EV, Blok HE, Thieme Groen ES, Pouw ME, Kalkman CJ, Bonten MJ.

N Engl J Med. 2009 Jan 1;360(1):20-31. doi: 10.1056/NEJMoa0800394.

22.

The influence of maggot excretions on PAO1 biofilm formation on different biomaterials.

Cazander G, van Veen KE, Bouwman LH, Bernards AT, Jukema GN.

Clin Orthop Relat Res. 2009 Feb;467(2):536-45. doi: 10.1007/s11999-008-0555-2. Epub 2008 Oct 16.

23.

Can Escherichia coli be used as an indicator organism for transmission events in hospitals?

van den Broek PJ, Bernards AT, van der Reijden TJ, van Strijen B, Dijkshoorn L.

Eur J Clin Microbiol Infect Dis. 2009 Feb;28(2):169-73. doi: 10.1007/s10096-008-0597-0. Epub 2008 Aug 6.

PMID:
18682996
24.

Multifactorial origin of high incidence of Serratia marcescens in a cardio-thoracic ICU: analysis of risk factors and epidemiological characteristics.

de Boer MG, Brunsveld-Reinders AH, Salomons EM, Dijkshoorn L, Bernards AT, van den Berg PC, van den Broek PJ.

J Infect. 2008 Jun;56(6):446-53. doi: 10.1016/j.jinf.2008.04.001. Epub 2008 May 29.

PMID:
18511122
25.

[Community-acquired Staphylococcus aureus pneumonia following influenza and the choice of empirical antibiotic treatment].

van Nieuwkoop C, Bernards AT, Compier EA, Kraemer CV, Visser LG.

Ned Tijdschr Geneeskd. 2008 Apr 5;152(14):822-6. Dutch.

PMID:
18491826
26.

Dissemination of Bacillus cereus in a paediatric intensive care unit traced to insufficient disinfection of reusable ventilator air-flow sensors.

Kalpoe JS, Hogenbirk K, van Maarseveen NM, Gesink-Van der Veer BJ, Kraakman ME, Maarleveld JJ, van der Reyden TJ, Dijkshoorn L, Bernards AT.

J Hosp Infect. 2008 Apr;68(4):341-7. doi: 10.1016/j.jhin.2008.01.017. Epub 2008 Mar 21.

PMID:
18358564
27.

Mycobacterium chelonae keratitis in a patient with Sjögren's syndrome.

Van Der Beek MT, Bernards AT, Lapid-Gortzak R.

Eur J Ophthalmol. 2008 Mar-Apr;18(2):294-6.

PMID:
18320526
28.

The minimal important change of the PRAFAB questionnaire in women with stress urinary incontinence: results from a prospective cohort study.

Hendriks EJ, Bernards AT, de Bie RA, de Vet HC.

Neurourol Urodyn. 2008;27(5):379-87. doi: 10.1002/nau.20554.

PMID:
18288703
29.

Factorial validity and internal consistency of the PRAFAB questionnaire in women with stress urinary incontinence.

Hendriks EJ, Bernards AT, Staal JB, de Vet HC, de Bie RA.

BMC Urol. 2008 Jan 24;8:1. doi: 10.1186/1471-2490-8-1.

30.

Molecular typing of a suspected cluster of Nocardia farcinica infections by use of randomly amplified polymorphic DNA, pulsed-field gel electrophoresis, and amplified fragment length polymorphism analyses.

Kalpoe JS, Templeton KE, Horrevorts AM, Endtz HP, Kuijper EJ, Bernards AT, Klaassen CH.

J Clin Microbiol. 2007 Dec;45(12):4048-50. Epub 2007 Oct 3.

31.
32.

Genotypic diversity and antibiotic susceptibility of Acinetobacter baumannii isolates in a Bulgarian hospital.

Dobrewski R, Savov E, Bernards AT, van den Barselaar M, Nordmann P, van den Broek PJ, Dijkshoorn L.

Clin Microbiol Infect. 2006 Nov;12(11):1135-7.

33.

Epidemiology of multiple Acinetobacter outbreaks in The Netherlands during the period 1999-2001.

van den Broek PJ, Arends J, Bernards AT, De Brauwer E, Mascini EM, van der Reijden TJ, Spanjaard L, Thewessen EA, van der Zee A, van Zeijl JH, Dijkshoorn L.

Clin Microbiol Infect. 2006 Sep;12(9):837-43.

34.

[Maggot therapy for treatment of severe infections in trauma surgery: "back to the future!"].

Jukema GN, Steenvoorde P, Wong CY, Bernards AT, van Dissel JT.

Zentralbl Chir. 2006 Apr;131 Suppl 1:S75-8. German.

PMID:
16575650
35.

Prevalence of Acinetobacter baumannii and other Acinetobacter spp. in faecal samples from non-hospitalised individuals.

Dijkshoorn L, van Aken E, Shunburne L, van der Reijden TJ, Bernards AT, Nemec A, Towner KJ.

Clin Microbiol Infect. 2005 Apr;11(4):329-32.

36.

Persistent Acinetobacter baumannii? Look inside your medical equipment.

Bernards AT, Harinck HI, Dijkshoorn L, van der Reijden TJ, van den Broek PJ.

Infect Control Hosp Epidemiol. 2004 Nov;25(11):1002-4.

PMID:
15566039
37.

[Linezolid, an agent from a new class of antibiotics].

Kuijper EJ, Schippers EF, Bernards AT.

Ned Tijdschr Geneeskd. 2004 Aug 7;148(32):1577-81. Review. Dutch.

PMID:
15382556
38.

Amputation-sparing treatment by nature: "surgical" maggots revisited.

Jukema GN, Menon AG, Bernards AT, Steenvoorde P, Taheri Rastegar A, van Dissel JT.

Clin Infect Dis. 2002 Dec 15;35(12):1566-71. Epub 2002 Dec 2.

PMID:
12471580
39.

Microbial contamination of cord blood stem cells.

Honohan A, Olthuis H, Bernards AT, van Beckhoven JM, Brand A.

Vox Sang. 2002 Jan;82(1):32-8.

PMID:
11856465
40.

Quantity versus quality of hand hygiene.

van den Broek PJ, Verbakel-Salomons EM, Bernards AT.

J Hosp Infect. 2001 Dec;49(4):297-8. No abstract available.

PMID:
11740882
41.

Acinetobacter junii causes life-threatening sepsis in preterm infants.

de Beaufort AJ, Bernards AT, Dijkshoorn L, van Boven CP.

Acta Paediatr. 1999 Jul;88(7):772-5.

PMID:
10447139
42.

Risk factors for acquisition of Serratia marcescens in a surgical intensive care unit.

van der Sar-van der Brugge S, Arend SM, Bernards AT, Berbee GA, Westendorp RG, Feuth JD, van den Broek PJ.

J Hosp Infect. 1999 Apr;41(4):291-9.

PMID:
10392335
43.

Methicillin-resistant Staphylococcus aureus and Acinetobacter baumannii: an unexpected difference in epidemiologic behavior.

Bernards AT, Frénay HM, Lim BT, Hendriks WD, Dijkshoorn L, van Boven CP.

Am J Infect Control. 1998 Dec;26(6):544-51.

PMID:
9836836
44.
45.

Acinetobacter species identification by using tRNA spacer fingerprinting.

Ehrenstein B, Bernards AT, Dijkshoorn L, Gerner-Smidt P, Towner KJ, Bouvet PJ, Daschner FD, Grundmann H.

J Clin Microbiol. 1996 Oct;34(10):2414-20.

46.

Evaluation of the ability of a commercial system to identify Acinetobacter genomic species.

Bernards AT, van der Toorn J, van Boven CP, Dijkshoorn L.

Eur J Clin Microbiol Infect Dis. 1996 Apr;15(4):303-8.

PMID:
8781881
47.

Diagnosis of Helicobacter pylori infection by specific gastric mucosal IgA and IgG pylori antibodies.

Veenendaal RA, Götz JM, Schroijen V, Kurban F, Bernards AT, Veselic M, Peña AS, Lamers CB.

J Clin Pathol. 1995 Nov;48(11):990-3.

48.

Phenotypic characterisation of Acinetobacter strains of 13 DNA-DNA hybridisation groups by means of the biolog system.

Bernards AT, Dijkshoorn L, Van der Toorn J, Bochner BR, Van Boven CP.

J Med Microbiol. 1995 Feb;42(2):113-9.

PMID:
7869346
49.

The pain threshold in juvenile chronic arthritis.

Hogeweg JA, Kuis W, Huygen AC, de Jong-de vos van Steenwijk C, Bernards AT, Oostendorp RA, Helders PJ.

Br J Rheumatol. 1995 Jan;34(1):61-7.

PMID:
7881842
50.

Algometry. Measuring pain threshold, method and characteristics in healthy subjects.

Hogeweg JA, Langereis MJ, Bernards AT, Faber JA, Helders PJ.

Scand J Rehabil Med. 1992;24(2):99-103.

PMID:
1604268

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