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Items: 1 to 50 of 134

1.

BacTag - a pipeline for fast and accurate gene and allele typing in bacterial sequencing data based on database preprocessing.

Khachatryan L, Kraakman MEM, Bernards AT, Laros JFJ.

BMC Genomics. 2019 May 6;20(1):338. doi: 10.1186/s12864-019-5723-0.

2.

Time to positivity of blood cultures supports early re-evaluation of empiric broad-spectrum antimicrobial therapy.

Lambregts MMC, Bernards AT, van der Beek MT, Visser LG, de Boer MG.

PLoS One. 2019 Jan 2;14(1):e0208819. doi: 10.1371/journal.pone.0208819. eCollection 2019.

3.

Carriage of antibiotic-resistant Gram-negative bacteria after discontinuation of selective decontamination of the digestive tract (SDD) or selective oropharyngeal decontamination (SOD).

de Jonge E, de Wilde RBP, Juffermans NP, Oostdijk EAN, Bernards AT, van Essen EHR, Kuijper EJ, Visser CE, Kesecioglu J, Bonten MJM.

Crit Care. 2018 Sep 29;22(1):243. doi: 10.1186/s13054-018-2170-2.

4.

Re: 'Development of diagnostic prediction tools for bacteraemia caused by 3rd generation cephalosporin-resistant Enterobacteriaceae in suspected bacterial infections' by Rottier, et al.

Lambregts MMC, Bernards AT, Visser LG, de Boer MGJ.

Clin Microbiol Infect. 2018 Dec;24(12):1346-1348. doi: 10.1016/j.cmi.2018.07.019. Epub 2018 Aug 2. No abstract available.

PMID:
30077798
5.

Correction: p190 RhoGAP promotes contact inhibition in epithelial cells by repressing YAP activity.

Frank SR, Köllmann CP, Luong P, Galli GG, Zou L, Bernards A, Getz G, Calogero RA, Frödin M, Hansen SH.

J Cell Biol. 2018 Sep 3;217(9):3313. doi: 10.1083/JCB.20171005807172018c. Epub 2018 Jul 25. No abstract available.

6.

p190 RhoGAP promotes contact inhibition in epithelial cells by repressing YAP activity.

Frank SR, Köllmann CP, Luong P, Galli GG, Zou L, Bernards A, Getz G, Calogero RA, Frödin M, Hansen SH.

J Cell Biol. 2018 Sep 3;217(9):3183-3201. doi: 10.1083/jcb.201710058. Epub 2018 Jun 22. Erratum in: J Cell Biol. 2018 Jul 25;:.

7.

Distribution and clinical determinants of time-to-positivity of blood cultures in patients with neutropenia.

Lambregts MMC, Warreman EB, Bernards AT, Veelken H, von dem Borne PA, Dekkers OM, Visser LG, de Boer MG.

Eur J Haematol. 2018 Feb;100(2):206-214. doi: 10.1111/ejh.13001. Epub 2017 Dec 13.

PMID:
29171916
8.

Analysis of somatic microsatellite indels identifies driver events in human tumors.

Maruvka YE, Mouw KW, Karlic R, Parasuraman P, Kamburov A, Polak P, Haradhvala NJ, Hess JM, Rheinbay E, Brody Y, Koren A, Braunstein LZ, D'Andrea A, Lawrence MS, Bass A, Bernards A, Michor F, Getz G.

Nat Biotechnol. 2017 Oct;35(10):951-959. doi: 10.1038/nbt.3966. Epub 2017 Sep 11.

PMID:
28892075
9.

Dissecting hematopoietic and renal cell heterogeneity in adult zebrafish at single-cell resolution using RNA sequencing.

Tang Q, Iyer S, Lobbardi R, Moore JC, Chen H, Lareau C, Hebert C, Shaw ML, Neftel C, Suva ML, Ceol CJ, Bernards A, Aryee M, Pinello L, Drummond IA, Langenau DM.

J Exp Med. 2017 Oct 2;214(10):2875-2887. doi: 10.1084/jem.20170976. Epub 2017 Sep 6.

10.

Recurrent and functional regulatory mutations in breast cancer.

Rheinbay E, Parasuraman P, Grimsby J, Tiao G, Engreitz JM, Kim J, Lawrence MS, Taylor-Weiner A, Rodriguez-Cuevas S, Rosenberg M, Hess J, Stewart C, Maruvka YE, Stojanov P, Cortes ML, Seepo S, Cibulskis C, Tracy A, Pugh TJ, Lee J, Zheng Z, Ellisen LW, Iafrate AJ, Boehm JS, Gabriel SB, Meyerson M, Golub TR, Baselga J, Hidalgo-Miranda A, Shioda T, Bernards A, Lander ES, Getz G.

Nature. 2017 Jul 6;547(7661):55-60. doi: 10.1038/nature22992. Epub 2017 Jun 28.

11.

Notice of Retraction and Replacement: Oostdijk et al. Effects of Decontamination of the Oropharynx and Intestinal Tract on Antibiotic Resistance in ICUs: A Randomized Clinical Trial. JAMA. 2014;312(14):1429-1437.

Oostdijk EAN, Kesecioglu J, Schultz MJ, Visser CE, de Jonge E, van Essen EHR, Bernards AT, Purmer I, Brimicombe R, Bergmans D, van Tiel F, Bosch FH, Mascini E, van Griethuysen A, Bindels A, Jansz A, van Steveninck FAL, van der Zwet WC, Fijen JW, Thijsen S, de Jong R, Oudbier J, Raben A, van der Vorm E, Koeman M, Rothbarth P, Rijkeboer A, Gruteke P, Hart H, Peerbooms P, Winsser LJ, van Elsacker-Niele AW, Demmendaal K, Brandenburg A, de Smet AMGA, Bonten MJM.

JAMA. 2017 Apr 18;317(15):1583-1584. doi: 10.1001/jama.2017.1282. No abstract available.

PMID:
28418487
12.

Interaction of p190A RhoGAP with eIF3A and Other Translation Preinitiation Factors Suggests a Role in Protein Biosynthesis.

Parasuraman P, Mulligan P, Walker JA, Li B, Boukhali M, Haas W, Bernards A.

J Biol Chem. 2017 Feb 17;292(7):2679-2689. doi: 10.1074/jbc.M116.769216. Epub 2016 Dec 22.

13.

Disposition and metabolism of TAK-438 (vonoprazan fumarate), a novel potassium-competitive acid blocker, in rats and dogs.

Kogame A, Takeuchi T, Nonaka M, Yamasaki H, Kawaguchi N, Bernards A, Tagawa Y, Morohashi A, Kondo T, Moriwaki T, Asahi S.

Xenobiotica. 2017 Mar;47(3):255-266. doi: 10.1080/00498254.2016.1182667. Epub 2016 May 26.

PMID:
27225050
14.

Genome-wide identification of microRNAs regulating cholesterol and triglyceride homeostasis.

Wagschal A, Najafi-Shoushtari SH, Wang L, Goedeke L, Sinha S, deLemos AS, Black JC, Ramírez CM, Li Y, Tewhey R, Hatoum I, Shah N, Lu Y, Kristo F, Psychogios N, Vrbanac V, Lu YC, Hla T, de Cabo R, Tsang JS, Schadt E, Sabeti PC, Kathiresan S, Cohen DE, Whetstine J, Chung RT, Fernández-Hernando C, Kaplan LM, Bernards A, Gerszten RE, Näär AM.

Nat Med. 2015 Nov;21(11):1290-7. doi: 10.1038/nm.3980. Epub 2015 Oct 26.

15.

Effects of decontamination of the oropharynx and intestinal tract on antibiotic resistance in ICUs: a randomized clinical trial.

Oostdijk EAN, Kesecioglu J, Schultz MJ, Visser CE, de Jonge E, van Essen EHR, Bernards AT, Purmer I, Brimicombe R, Bergmans D, van Tiel F, Bosch FH, Mascini E, van Griethuysen A, Bindels A, Jansz A, van Steveninck FAL, van der Zwet WC, Fijen JW, Thijsen S, de Jong R, Oudbier J, Raben A, van der Vorm E, Koeman M, Rothbarth P, Rijkeboer A, Gruteke P, Hart-Sweet H, Peerbooms P, Winsser LJ, van Elsacker-Niele AW, Demmendaal K, Brandenburg A, de Smet AMGA, Bonten MJM.

JAMA. 2014 Oct 8;312(14):1429-1437. doi: 10.1001/jama.2014.7247.

PMID:
25271544
16.

Increased expression levels of chromosomal AmpC β-lactamase in clinical Escherichia coli isolates and their effect on susceptibility to extended-spectrum cephalosporins.

Paltansing S, Kraakman M, van Boxtel R, Kors I, Wessels E, Goessens W, Tommassen J, Bernards A.

Microb Drug Resist. 2015 Feb;21(1):7-16. doi: 10.1089/mdr.2014.0108. Epub 2014 Sep 4.

PMID:
25188329
17.

A Drosophila screen identifies neurofibromatosis-1 genetic modifiers involved in systemic and synaptic growth.

Walker JA, Bernards A.

Rare Dis. 2014 Feb 25;2:e28341. doi: 10.4161/rdis.28341. eCollection 2014.

18.

An integrated approach to control a prolonged outbreak of multidrug-resistant Pseudomonas aeruginosa in an intensive care unit.

Knoester M, de Boer MG, Maarleveld JJ, Claas EC, Bernards AT, de Jonge E, van Dissel JT, Veldkamp KE.

Clin Microbiol Infect. 2014 Apr;20(4):O207-15. doi: 10.1111/1469-0691.12372. Epub 2013 Oct 25.

19.

CTF meeting 2012: Translation of the basic understanding of the biology and genetics of NF1, NF2, and schwannomatosis toward the development of effective therapies.

Widemann BC, Acosta MT, Ammoun S, Belzberg AJ, Bernards A, Blakeley J, Bretscher A, Cichowski K, Clapp DW, Dombi E, Evans GD, Ferner R, Fernandez-Valle C, Fisher MJ, Giovannini M, Gutmann DH, Hanemann CO, Hennigan R, Huson S, Ingram D, Kissil J, Korf BR, Legius E, Packer RJ, McClatchey AI, McCormick F, North K, Pehrsson M, Plotkin SR, Ramesh V, Ratner N, Schirmer S, Sherman L, Schorry E, Stevenson D, Stewart DR, Ullrich N, Bakker AC, Morrison H.

Am J Med Genet A. 2014 Mar;164A(3):563-78. doi: 10.1002/ajmg.a.36312. Epub 2014 Jan 17.

20.

Genetic and functional studies implicate synaptic overgrowth and ring gland cAMP/PKA signaling defects in the Drosophila melanogaster neurofibromatosis-1 growth deficiency.

Walker JA, Gouzi JY, Long JB, Huang S, Maher RC, Xia H, Khalil K, Ray A, Van Vactor D, Bernards R, Bernards A.

PLoS Genet. 2013 Nov;9(11):e1003958. doi: 10.1371/journal.pgen.1003958. Epub 2013 Nov 21.

21.

Dutch guidelines for physiotherapy in patients with stress urinary incontinence: an update.

Bernards AT, Berghmans BC, Slieker-Ten Hove MC, Staal JB, de Bie RA, Hendriks EJ.

Int Urogynecol J. 2014 Feb;25(2):171-9. doi: 10.1007/s00192-013-2219-3. Epub 2013 Oct 1. Review.

22.

Exploring the contribution of efflux on the resistance to fluoroquinolones in clinical isolates of Escherichia coli.

Paltansing S, Tengeler AC, Kraakman ME, Claas EC, Bernards AT.

Microb Drug Resist. 2013 Dec;19(6):469-76. doi: 10.1089/mdr.2013.0058. Epub 2013 Aug 2.

PMID:
23909485
23.

Extended-spectrum β-lactamase-producing enterobacteriaceae among travelers from the Netherlands.

Paltansing S, Vlot JA, Kraakman ME, Mesman R, Bruijning ML, Bernards AT, Visser LG, Veldkamp KE.

Emerg Infect Dis. 2013 Aug;19(8):1206-13. doi: 10.3201/eid.1908.130257.

24.

Electrical stimulation with non-implanted electrodes for urinary incontinence in men.

Berghmans B, Hendriks E, Bernards A, de Bie R, Omar MI.

Cochrane Database Syst Rev. 2013 Jun 6;(6):CD001202. doi: 10.1002/14651858.CD001202.pub5. Review.

PMID:
23740763
25.

No human transmission of Mycobacterium malmoense in a perfect storm setting.

Hoefsloot W, Boeree MJ, van Nieuwkoop C, Bernards AT, Savelkoul PH, van Ingen J, van Soolingen D.

Eur Respir J. 2012 Dec;40(6):1576-8. doi: 10.1183/09031936.00096312. No abstract available.

26.

Characterization of fluoroquinolone and cephalosporin resistance mechanisms in Enterobacteriaceae isolated in a Dutch teaching hospital reveals the presence of an Escherichia coli ST131 clone with a specific mutation in parE.

Paltansing S, Kraakman ME, Ras JM, Wessels E, Bernards AT.

J Antimicrob Chemother. 2013 Jan;68(1):40-5. doi: 10.1093/jac/dks365. Epub 2012 Sep 18.

PMID:
22991424
27.

Notch signaling expands a pre-malignant pool of T-cell acute lymphoblastic leukemia clones without affecting leukemia-propagating cell frequency.

Blackburn JS, Liu S, Raiser DM, Martinez SA, Feng H, Meeker ND, Gentry J, Neuberg D, Look AT, Ramaswamy S, Bernards A, Trede NS, Langenau DM.

Leukemia. 2012 Sep;26(9):2069-78. doi: 10.1038/leu.2012.116. Epub 2012 Apr 27.

28.

Evaluation of several biochemical and molecular techniques for identification of Streptococcus pneumoniae and Streptococcus pseudopneumoniae and their detection in respiratory samples.

Wessels E, Schelfaut JJ, Bernards AT, Claas EC.

J Clin Microbiol. 2012 Apr;50(4):1171-7. doi: 10.1128/JCM.06609-11. Epub 2012 Jan 25.

29.

The receptor tyrosine kinase Alk controls neurofibromin functions in Drosophila growth and learning.

Gouzi JY, Moressis A, Walker JA, Apostolopoulou AA, Palmer RH, Bernards A, Skoulakis EM.

PLoS Genet. 2011 Sep;7(9):e1002281. doi: 10.1371/journal.pgen.1002281. Epub 2011 Sep 15.

30.

Selective digestive tract decontamination and selective oropharyngeal decontamination and antibiotic resistance in patients in intensive-care units: an open-label, clustered group-randomised, crossover study.

de Smet AM, Kluytmans JA, Blok HE, Mascini EM, Benus RF, Bernards AT, Kuijper EJ, Leverstein-van Hall MA, Jansz AR, de Jongh BM, van Asselt GJ, Frenay IH, Thijsen SF, Conijn SN, Kaan JA, Arends JP, Sturm PD, Bootsma MC, Bonten MJ.

Lancet Infect Dis. 2011 May;11(5):372-80. doi: 10.1016/S1473-3099(11)70035-4. Epub 2011 Mar 21.

PMID:
21420908
31.

Back to the future: proceedings from the 2010 NF Conference.

Huson SM, Acosta MT, Belzberg AJ, Bernards A, Chernoff J, Cichowski K, Gareth Evans D, Ferner RE, Giovannini M, Korf BR, Listernick R, North KN, Packer RJ, Parada LF, Peltonen J, Ramesh V, Reilly KM, Risner JW, Schorry EK, Upadhyaya M, Viskochil DH, Zhu Y, Hunter-Schaedle K, Giancotti FG.

Am J Med Genet A. 2011 Feb;155A(2):307-21. doi: 10.1002/ajmg.a.33804. Epub 2010 Dec 22.

32.

[Fatal pneumonia caused by carbapenem resistant Klebsiella pneumoniae].

van Apeldoorn M, Lettinga K, Bernards A, Paltansing S, alNaiemi N, Kalpoe J.

Ned Tijdschr Geneeskd. 2010;154(45):A2526. Dutch.

PMID:
21118587
33.

[Nocardiosis, an important opportunistic infection].

Hoogeveen M, Brouwer RE, Bernards AS, Soetekouw R.

Ned Tijdschr Geneeskd. 2010;154:A1177. Dutch.

PMID:
20170559
34.

Endemic and epidemic acinetobacter species in a university hospital: an 8-year survey.

van den Broek PJ, van der Reijden TJ, van Strijen E, Helmig-Schurter AV, Bernards AT, Dijkshoorn L.

J Clin Microbiol. 2009 Nov;47(11):3593-9. doi: 10.1128/JCM.00967-09. Epub 2009 Sep 30.

35.

Decontamination of the digestive tract and oropharynx: hospital acquired infections after discharge from the intensive care unit.

de Smet AM, Hopmans TE, Minderhoud AL, Blok HE, Gossink-Franssen A, Bernards AT, Bonten MJ.

Intensive Care Med. 2009 Sep;35(9):1609-13. doi: 10.1007/s00134-009-1554-9. Epub 2009 Jun 24.

36.

Prognostic indicators of poor short-term outcome of physiotherapy intervention in women with stress urinary incontinence.

Hendriks EJ, Kessels AG, de Vet HC, Bernards AT, de Bie RA.

Neurourol Urodyn. 2010 Mar;29(3):336-43. doi: 10.1002/nau.20752.

PMID:
19475574
37.

Do maggots have an influence on bacterial growth? A study on the susceptibility of strains of six different bacterial species to maggots of Lucilia sericata and their excretions/secretions.

Cazander G, van Veen KE, Bernards AT, Jukema GN.

J Tissue Viability. 2009 Aug;18(3):80-7. doi: 10.1016/j.jtv.2009.02.005. Epub 2009 Apr 9.

PMID:
19362001
38.

Negative pressure wound treatment with polyvinyl alcohol foam and polyhexanide antiseptic solution instillation in posttraumatic osteomyelitis.

Timmers MS, Graafland N, Bernards AT, Nelissen RG, van Dissel JT, Jukema GN.

Wound Repair Regen. 2009 Mar-Apr;17(2):278-86. doi: 10.1111/j.1524-475X.2009.00458.x.

PMID:
19320897
39.

Decontamination of the digestive tract and oropharynx in ICU patients.

de Smet AM, Kluytmans JA, Cooper BS, Mascini EM, Benus RF, van der Werf TS, van der Hoeven JG, Pickkers P, Bogaers-Hofman D, van der Meer NJ, Bernards AT, Kuijper EJ, Joore JC, Leverstein-van Hall MA, Bindels AJ, Jansz AR, Wesselink RM, de Jongh BM, Dennesen PJ, van Asselt GJ, te Velde LF, Frenay IH, Kaasjager K, Bosch FH, van Iterson M, Thijsen SF, Kluge GH, Pauw W, de Vries JW, Kaan JA, Arends JP, Aarts LP, Sturm PD, Harinck HI, Voss A, Uijtendaal EV, Blok HE, Thieme Groen ES, Pouw ME, Kalkman CJ, Bonten MJ.

N Engl J Med. 2009 Jan 1;360(1):20-31. doi: 10.1056/NEJMoa0800394.

40.

Loss of the Ras regulator RASAL1: another route to Ras activation in colorectal cancer.

Bernards A, Settleman J.

Gastroenterology. 2009 Jan;136(1):46-8. doi: 10.1053/j.gastro.2008.11.024. Epub 2008 Nov 28. No abstract available.

PMID:
19041648
41.

Risk factors and time delay associated with cardiac device infections: Leiden device registry.

Lekkerkerker JC, van Nieuwkoop C, Trines SA, van der Bom JG, Bernards A, van de Velde ET, Bootsma M, Zeppenfeld K, Jukema JW, Borleffs JW, Schalij MJ, van Erven L.

Heart. 2009 May;95(9):715-20. doi: 10.1136/hrt.2008.151985. Epub 2008 Nov 26.

PMID:
19036758
42.

The influence of maggot excretions on PAO1 biofilm formation on different biomaterials.

Cazander G, van Veen KE, Bouwman LH, Bernards AT, Jukema GN.

Clin Orthop Relat Res. 2009 Feb;467(2):536-45. doi: 10.1007/s11999-008-0555-2. Epub 2008 Oct 16.

43.

Can Escherichia coli be used as an indicator organism for transmission events in hospitals?

van den Broek PJ, Bernards AT, van der Reijden TJ, van Strijen B, Dijkshoorn L.

Eur J Clin Microbiol Infect Dis. 2009 Feb;28(2):169-73. doi: 10.1007/s10096-008-0597-0. Epub 2008 Aug 6.

PMID:
18682996
44.

Multifactorial origin of high incidence of Serratia marcescens in a cardio-thoracic ICU: analysis of risk factors and epidemiological characteristics.

de Boer MG, Brunsveld-Reinders AH, Salomons EM, Dijkshoorn L, Bernards AT, van den Berg PC, van den Broek PJ.

J Infect. 2008 Jun;56(6):446-53. doi: 10.1016/j.jinf.2008.04.001. Epub 2008 May 29.

PMID:
18511122
45.

[Community-acquired Staphylococcus aureus pneumonia following influenza and the choice of empirical antibiotic treatment].

van Nieuwkoop C, Bernards AT, Compier EA, Kraemer CV, Visser LG.

Ned Tijdschr Geneeskd. 2008 Apr 5;152(14):822-6. Dutch.

PMID:
18491826
46.

Dissemination of Bacillus cereus in a paediatric intensive care unit traced to insufficient disinfection of reusable ventilator air-flow sensors.

Kalpoe JS, Hogenbirk K, van Maarseveen NM, Gesink-Van der Veer BJ, Kraakman ME, Maarleveld JJ, van der Reyden TJ, Dijkshoorn L, Bernards AT.

J Hosp Infect. 2008 Apr;68(4):341-7. doi: 10.1016/j.jhin.2008.01.017. Epub 2008 Mar 21.

PMID:
18358564
47.

Mycobacterium chelonae keratitis in a patient with Sjögren's syndrome.

Van Der Beek MT, Bernards AT, Lapid-Gortzak R.

Eur J Ophthalmol. 2008 Mar-Apr;18(2):294-6.

PMID:
18320526
48.

The minimal important change of the PRAFAB questionnaire in women with stress urinary incontinence: results from a prospective cohort study.

Hendriks EJ, Bernards AT, de Bie RA, de Vet HC.

Neurourol Urodyn. 2008;27(5):379-87. doi: 10.1002/nau.20554.

PMID:
18288703
49.

GEFs in growth factor signaling.

Bernards A, Settleman J.

Growth Factors. 2007 Oct;25(5):355-61. doi: 10.1080/08977190701830375. Review.

PMID:
18236214
50.

Factorial validity and internal consistency of the PRAFAB questionnaire in women with stress urinary incontinence.

Hendriks EJ, Bernards AT, Staal JB, de Vet HC, de Bie RA.

BMC Urol. 2008 Jan 24;8:1. doi: 10.1186/1471-2490-8-1.

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