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Items: 1 to 50 of 365

1.

Mechanisms of Nanonewton Mechanostability in a Protein Complex Revealed by Molecular Dynamics Simulations and Single-Molecule Force Spectroscopy.

Bernardi RC, Durner E, Schoeler C, Malinowska KH, Carvalho BG, Bayer EA, Luthey-Schulten Z, Gaub HE, Nash MA.

J Am Chem Soc. 2019 Sep 18;141(37):14752-14763. doi: 10.1021/jacs.9b06776. Epub 2019 Sep 9.

PMID:
31464132
2.
3.

Clozapine increased c-Fos protein expression in several brain subregions of socially isolated rats.

Stanisavljević A, Perić I, Bernardi RE, Gass P, Filipović D.

Brain Res Bull. 2019 Jul 9;152:35-44. doi: 10.1016/j.brainresbull.2019.07.005. [Epub ahead of print]

PMID:
31299320
4.

HIF-1α is overexpressed in leukemic cells from TP53-disrupted patients and is a promising therapeutic target in chronic lymphocytic leukemia.

Griggio V, Vitale C, Todaro M, Riganti C, Kopecka J, Salvetti C, Bomben R, Dal Bo M, Magliulo D, Rossi D, Pozzato G, Bonello L, Marchetti M, Omedè P, Kodipad AA, Laurenti L, Del Poeta G, Mauro FR, Bernardi R, Zenz T, Gattei V, Gaidano G, Foà R, Massaia M, Boccadoro M, Coscia M.

Haematologica. 2019 Jul 9. pii: haematol.2019.217430. doi: 10.3324/haematol.2019.217430. [Epub ahead of print]

5.

The Inhibition of RasGRF2, But Not RasGRF1, Alters Cocaine Reward in Mice.

Bernardi RE, Olevska A, Morella I, Fasano S, Santos E, Brambilla R, Spanagel R.

J Neurosci. 2019 Aug 7;39(32):6325-6338. doi: 10.1523/JNEUROSCI.1120-18.2019. Epub 2019 Jun 10.

PMID:
31182637
6.

A2A-D2 Heteromers on Striatal Astrocytes: Biochemical and Biophysical Evidence.

Pelassa S, Guidolin D, Venturini A, Averna M, Frumento G, Campanini L, Bernardi R, Cortelli P, Buonaura GC, Maura G, Agnati LF, Cervetto C, Marcoli M.

Int J Mol Sci. 2019 May 17;20(10). pii: E2457. doi: 10.3390/ijms20102457.

7.

Discerning between Two Tuscany (Italy) Ancient Apple cultivars, 'Rotella' and 'Casciana', through Polyphenolic Fingerprint and Molecular Markers.

Lo Piccolo E, Viviani A, Guidi L, Remorini D, Massai R, Bernardi R, Landi M.

Molecules. 2019 May 7;24(9). pii: E1758. doi: 10.3390/molecules24091758.

8.

Latent tuberculosis infection in patients with rheumatic diseases.

Anton C, Machado FD, Ramirez JMA, Bernardi RM, Palominos PE, Brenol CV, Mello FCQ, Silva DR.

J Bras Pneumol. 2019 Apr 25;45(2):e20190023. doi: 10.1590/1806-3713/e20190023. Review. English, Portuguese.

9.

UV-B exposure reduces the activity of several cell wall-dismantling enzymes and affects the expression of their biosynthetic genes in peach fruit (Prunus persica L., cv. Fairtime, melting phenotype).

Santin M, Giordani T, Cavallini A, Bernardi R, Castagna A, Hauser MT, Ranieri A.

Photochem Photobiol Sci. 2019 May 15;18(5):1280-1289. doi: 10.1039/c8pp00505b.

PMID:
30907896
10.

Effects of chlorogenic acid, epicatechin gallate, and quercetin on mucin expression and secretion in the Caco-2/HT29-MTX cell model.

Volstatova T, Marchica A, Hroncova Z, Bernardi R, Doskocil I, Havlik J.

Food Sci Nutr. 2019 Jan 31;7(2):492-498. doi: 10.1002/fsn3.818. eCollection 2019 Feb.

11.

How an ancient, salt-tolerant fruit crop, Ficus carica L., copes with salinity: a transcriptome analysis.

Vangelisti A, Zambrano LS, Caruso G, Macheda D, Bernardi R, Usai G, Mascagni F, Giordani T, Gucci R, Cavallini A, Natali L.

Sci Rep. 2019 Feb 22;9(1):2561. doi: 10.1038/s41598-019-39114-4.

12.

Is Exploitation Competition Involved in a Multitrophic Strategy for the Biocontrol of Fusarium Head Blight?

Sarrocco S, Valenti F, Manfredini S, Esteban P, Bernardi R, Puntoni G, Baroncelli R, Haidukowski M, Moretti A, Vannacci G.

Phytopathology. 2019 Apr;109(4):560-570. doi: 10.1094/PHYTO-04-18-0123-R. Epub 2019 Feb 18.

PMID:
30775950
13.

Signalling molecules responsive to ozone-induced oxidative stress in Salvia officinalis.

Marchica A, Lorenzini G, Papini R, Bernardi R, Nali C, Pellegrini E.

Sci Total Environ. 2019 Mar 20;657:568-576. doi: 10.1016/j.scitotenv.2018.11.472. Epub 2018 Dec 2.

PMID:
30550919
14.

Direction Matters: Monovalent Streptavidin/Biotin Complex under Load.

Sedlak SM, Schendel LC, Melo MCR, Pippig DA, Luthey-Schulten Z, Gaub HE, Bernardi RC.

Nano Lett. 2019 Jun 12;19(6):3415-3421. doi: 10.1021/acs.nanolett.8b04045. Epub 2018 Oct 26.

PMID:
30346175
15.

HIF-α factors as potential therapeutic targets in leukemia.

Magliulo D, Bernardi R.

Expert Opin Ther Targets. 2018 Nov;22(11):917-928. doi: 10.1080/14728222.2018.1538357. Epub 2018 Oct 27. Review.

PMID:
30345855
16.

Non-syndromic Mitral Valve Dysplasia Mutation Changes the Force Resilience and Interaction of Human Filamin A.

Haataja TJK, Bernardi RC, Lecointe S, Capoulade R, Merot J, Pentikäinen U.

Structure. 2019 Jan 2;27(1):102-112.e4. doi: 10.1016/j.str.2018.09.007. Epub 2018 Oct 18.

PMID:
30344108
17.

Probing the mental representation of quantifiers.

Pezzelle S, Bernardi R, Piazza M.

Cognition. 2018 Dec;181:117-126. doi: 10.1016/j.cognition.2018.08.009. Epub 2018 Sep 1.

PMID:
30179744
18.

Lysine-Specific Demethylase 1A as a Promising Target in Acute Myeloid Leukemia.

Magliulo D, Bernardi R, Messina S.

Front Oncol. 2018 Jul 19;8:255. doi: 10.3389/fonc.2018.00255. eCollection 2018. Review.

19.

Correction: MYCN acts as a direct co-regulator of p53 in MYCN amplified neuroblastoma.

Agarwal S, Milazzo G, Rajapakshe K, Bernardi R, Chen Z, Eveline B, Koster J, Perini G, Coarfa C, Shohet JM.

Oncotarget. 2018 Jul 6;9(52):30024. doi: 10.18632/oncotarget.25776. eCollection 2018 Jul 6.

20.

Contextual fear conditioning modulates the gene expression over time.

Federighi G, Traina G, Bernardi R, Baldi E, Bucherelli C, Scuri R.

Arch Ital Biol. 2018 Jul 1;156(1-2):40-47. doi: 10.12871/00039829201814.

PMID:
30039834
21.

c-Fos marking of identified midbrain neurons coactive after nicotine administration in-vivo.

Baur K, Hach A, Bernardi RE, Spanagel R, Bading H, Bengtson CP.

J Comp Neurol. 2018 Sep 1;526(13):2019-2031. doi: 10.1002/cne.24471. Epub 2018 Aug 2.

PMID:
29888787
22.

MYCN acts as a direct co-regulator of p53 in MYCN amplified neuroblastoma.

Agarwal S, Milazzo G, Rajapakshe K, Bernardi R, Chen Z, Barbieri E, Koster J, Perini G, Coarfa C, Shohet JM.

Oncotarget. 2018 Apr 17;9(29):20323-20338. doi: 10.18632/oncotarget.24859. eCollection 2018 Apr 17. Erratum in: Oncotarget. 2018 Jul 6;9(52):30024. Eveline, Barberi [corrected to Eveline, Barbieri].

23.

A retinoic acid-dependent stroma-leukemia crosstalk promotes chronic lymphocytic leukemia progression.

Farinello D, Wozińska M, Lenti E, Genovese L, Bianchessi S, Migliori E, Sacchetti N, di Lillo A, Bertilaccio MTS, de Lalla C, Valsecchi R, Gleave SB, Lligé D, Scielzo C, Mauri L, Ciampa MG, Scarfò L, Bernardi R, Lazarevic D, Gonzalez-Farre B, Bongiovanni L, Campo E, Cerutti A, Ponzoni M, Pattini L, Caligaris-Cappio F, Ghia P, Brendolan A.

Nat Commun. 2018 May 3;9(1):1787. doi: 10.1038/s41467-018-04150-7.

24.

Molecular mechanism of extreme mechanostability in a pathogen adhesin.

Milles LF, Schulten K, Gaub HE, Bernardi RC.

Science. 2018 Mar 30;359(6383):1527-1533. doi: 10.1126/science.aar2094.

25.

Impact of Clinical Simulation Training in Transplantation.

Marogna N, Bernardi R, Monti M, Costa G, Aguirre Mandau M, de Echave JL.

Transplant Proc. 2018 Mar;50(2):441-443. doi: 10.1016/j.transproceed.2017.12.041.

PMID:
29579823
26.

NAMD goes quantum: an integrative suite for hybrid simulations.

Melo MCR, Bernardi RC, Rudack T, Scheurer M, Riplinger C, Phillips JC, Maia JDC, Rocha GB, Ribeiro JV, Stone JE, Neese F, Schulten K, Luthey-Schulten Z.

Nat Methods. 2018 May;15(5):351-354. doi: 10.1038/nmeth.4638. Epub 2018 Mar 26.

27.

Profound Tissue Specificity in Proliferation Control Underlies Cancer Drivers and Aneuploidy Patterns.

Sack LM, Davoli T, Li MZ, Li Y, Xu Q, Naxerova K, Wooten EC, Bernardi RJ, Martin TD, Chen T, Leng Y, Liang AC, Scorsone KA, Westbrook TF, Wong KK, Elledge SJ.

Cell. 2018 Apr 5;173(2):499-514.e23. doi: 10.1016/j.cell.2018.02.037. Epub 2018 Mar 22.

28.

PyContact: Rapid, Customizable, and Visual Analysis of Noncovalent Interactions in MD Simulations.

Scheurer M, Rodenkirch P, Siggel M, Bernardi RC, Schulten K, Tajkhorshid E, Rudack T.

Biophys J. 2018 Feb 6;114(3):577-583. doi: 10.1016/j.bpj.2017.12.003.

29.

Fire forbids fifty-fifty forest.

van Nes EH, Staal A, Hantson S, Holmgren M, Pueyo S, Bernardi RE, Flores BM, Xu C, Scheffer M.

PLoS One. 2018 Jan 19;13(1):e0191027. doi: 10.1371/journal.pone.0191027. eCollection 2018.

30.

Transcriptome changes induced by arbuscular mycorrhizal fungi in sunflower (Helianthus annuus L.) roots.

Vangelisti A, Natali L, Bernardi R, Sbrana C, Turrini A, Hassani-Pak K, Hughes D, Cavallini A, Giovannetti M, Giordani T.

Sci Rep. 2018 Jan 8;8(1):4. doi: 10.1038/s41598-017-18445-0.

31.

Chronic Treatment with Fluoxetine or Clozapine of Socially Isolated Rats Prevents Subsector-Specific Reduction of Parvalbumin Immunoreactive Cells in the Hippocampus.

Filipović D, Stanisavljević A, Jasnić N, Bernardi RE, Inta D, Perić I, Gass P.

Neuroscience. 2018 Feb 10;371:384-394. doi: 10.1016/j.neuroscience.2017.12.020. Epub 2017 Dec 21.

PMID:
29275206
32.

Dissociable Role of Corticotropin Releasing Hormone Receptor Subtype 1 on Dopaminergic and D1 Dopaminoceptive Neurons in Cocaine Seeking Behavior.

Bernardi RE, Broccoli L, Hirth N, Justice NJ, Deussing JM, Hansson AC, Spanagel R.

Front Behav Neurosci. 2017 Nov 13;11:221. doi: 10.3389/fnbeh.2017.00221. eCollection 2017.

33.

Metabolic modulation of Ewing sarcoma cells inhibits tumor growth and stem cell properties.

Dasgupta A, Trucco M, Rainusso N, Bernardi RJ, Shuck R, Kurenbekova L, Loeb DM, Yustein JT.

Oncotarget. 2017 Aug 24;8(44):77292-77308. doi: 10.18632/oncotarget.20467. eCollection 2017 Sep 29.

34.

Combining in Vitro and in Silico Single-Molecule Force Spectroscopy to Characterize and Tune Cellulosomal Scaffoldin Mechanics.

Verdorfer T, Bernardi RC, Meinhold A, Ott W, Luthey-Schulten Z, Nash MA, Gaub HE.

J Am Chem Soc. 2017 Dec 13;139(49):17841-17852. doi: 10.1021/jacs.7b07574. Epub 2017 Nov 3.

35.

Intraspecific variation and influence of diet on the venom chemical profile of the Ectatomma brunneum Smith (Formicidae) ant evaluated by photoacoustic spectroscopy.

Bernardi RC, Firmino ELB, Mendonça A, Sguarizi-Antonio D, Pereira MC, da Cunha Andrade LH, Antonialli-Junior WF, Lima SM.

J Photochem Photobiol B. 2017 Oct;175:200-206. doi: 10.1016/j.jphotobiol.2017.09.004. Epub 2017 Sep 6.

PMID:
28910699
36.

Cultivar-specific transcriptome prediction and annotation in Ficus carica L.

Solorzano Zambrano L, Usai G, Vangelisti A, Mascagni F, Giordani T, Bernardi R, Cavallini A, Gucci R, Caruso G, D'Onofrio C, Quartacci MF, Picciarelli P, Conti B, Lucchi A, Natali L.

Genom Data. 2017 Jul 5;13:64-66. doi: 10.1016/j.gdata.2017.07.005. eCollection 2017 Sep.

37.

Physical Exercise Improves Total Antioxidant Capacity and Gene Expression in Rat Hippocampal Tissue.

Franzoni F, Federighi G, Fusi J, Agosta V, Cerri E, Banducci R, Petrocchi A, Bernardi R, Innocenti A, Pruneti C, Daniele S, Pellegrini S, Martini C, Scuri R, Galetta F.

Arch Ital Biol. 2017 Jul 1;155(1-2):1-10. doi: 10.12871/000398292017121.

PMID:
28715593
38.

Skeletal Dysplasia Mutations Effect on Human Filamins' Structure and Mechanosensing.

Seppälä J, Bernardi RC, Haataja TJK, Hellman M, Pentikäinen OT, Schulten K, Permi P, Ylänne J, Pentikäinen U.

Sci Rep. 2017 Jun 26;7(1):4218. doi: 10.1038/s41598-017-04441-x.

39.

Reactivating nuclear PTEN to treat CLL.

Bernardi R, Ghia P.

Oncotarget. 2017 May 30;8(22):35486-35487. doi: 10.18632/oncotarget.17543. No abstract available.

40.

Intravascular large B-cell lymphoma as a cause of terminal acute respiratory distress syndrome: atypical presentation of a rare disease.

Lazzari I, Galetti C, Corvalli G, Bernardi R, Gianotti G, Sagramoso C, Calogero P.

Aging Clin Exp Res. 2018 Jan;30(1):97-99. doi: 10.1007/s40520-017-0754-3. Epub 2017 Apr 25. No abstract available.

PMID:
28444517
41.

A common ground in clinical discussion groups: Intersubjective resonance and implicit operational theories.

Bernardi R.

Int J Psychoanal. 2017 Oct;98(5):1291-1309. doi: 10.1111/1745-8315.12633. Epub 2017 Mar 20.

PMID:
28317133
42.

PML promotes metastasis of triple-negative breast cancer through transcriptional regulation of HIF1A target genes.

Ponente M, Campanini L, Cuttano R, Piunti A, Delledonne GA, Coltella N, Valsecchi R, Villa A, Cavallaro U, Pattini L, Doglioni C, Bernardi R.

JCI Insight. 2017 Feb 23;2(4):e87380. doi: 10.1172/jci.insight.87380.

43.

Differential Roles for L-Type Calcium Channel Subtypes in Alcohol Dependence.

Uhrig S, Vandael D, Marcantoni A, Dedic N, Bilbao A, Vogt MA, Hirth N, Broccoli L, Bernardi RE, Schönig K, Gass P, Bartsch D, Spanagel R, Deussing JM, Sommer WH, Carbone E, Hansson AC.

Neuropsychopharmacology. 2017 Apr;42(5):1058-1069. doi: 10.1038/npp.2016.266. Epub 2016 Dec 1.

44.

24-Hydroxycholesterol participates in pancreatic neuroendocrine tumor development.

Soncini M, Corna G, Moresco M, Coltella N, Restuccia U, Maggioni D, Raccosta L, Lin CY, Invernizzi F, Crocchiolo R, Doglioni C, Traversari C, Bachi A, Bernardi R, Bordignon C, Gustafsson JÅ, Russo V.

Proc Natl Acad Sci U S A. 2016 Oct 11;113(41):E6219-E6227. Epub 2016 Sep 26.

45.

Impairment of cocaine-mediated behaviours in mice by clinically relevant Ras-ERK inhibitors.

Papale A, Morella IM, Indrigo MT, Bernardi RE, Marrone L, Marchisella F, Brancale A, Spanagel R, Brambilla R, Fasano S.

Elife. 2016 Aug 24;5. pii: e17111. doi: 10.7554/eLife.17111.

46.

A gene-by-sex interaction for nicotine reward: evidence from humanized mice and epidemiology.

Bernardi RE, Zohsel K, Hirth N, Treutlein J, Heilig M, Laucht M, Spanagel R, Sommer WH.

Transl Psychiatry. 2016 Jul 26;6(7):e861. doi: 10.1038/tp.2016.132.

47.

Hypoxia inducible factor-1α regulates a pro-invasive phenotype in acute monocytic leukemia.

Migliavacca J, Percio S, Valsecchi R, Ferrero E, Spinelli A, Ponzoni M, Tresoldi C, Pattini L, Bernardi R, Coltella N.

Oncotarget. 2016 Aug 16;7(33):53540-53557. doi: 10.18632/oncotarget.10660.

48.

QwikMD - Integrative Molecular Dynamics Toolkit for Novices and Experts.

Ribeiro JV, Bernardi RC, Rudack T, Stone JE, Phillips JC, Freddolino PL, Schulten K.

Sci Rep. 2016 May 24;6:26536. doi: 10.1038/srep26536.

49.

Rhizophagus intraradices or its associated bacteria affect gene expression of key enzymes involved in the rosmarinic acid biosynthetic pathway of basil.

Battini F, Bernardi R, Turrini A, Agnolucci M, Giovannetti M.

Mycorrhiza. 2016 Oct;26(7):699-707. doi: 10.1007/s00572-016-0707-2. Epub 2016 May 14.

PMID:
27179537
50.

Computational Methodologies for Real-Space Structural Refinement of Large Macromolecular Complexes.

Goh BC, Hadden JA, Bernardi RC, Singharoy A, McGreevy R, Rudack T, Cassidy CK, Schulten K.

Annu Rev Biophys. 2016 Jul 5;45:253-78. doi: 10.1146/annurev-biophys-062215-011113. Epub 2016 May 2. Review.

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