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Items: 1 to 50 of 57

1.

Distinct patterns of hybridization across a suture zone in a coral reef fish (Dascyllus trimaculatus).

Salas E, Hobbs JA, Bernal MA, Simison WB, Berumen ML, Bernardi G, Rocha LA.

Ecol Evol. 2020 Feb 27;10(6):2813-2837. doi: 10.1002/ece3.6068. eCollection 2020 Mar.

2.

Species-specific molecular responses of wild coral reef fishes during a marine heatwave.

Bernal MA, Schunter C, Lehmann R, Lightfoot DJ, Allan BJM, Veilleux HD, Rummer JL, Munday PL, Ravasi T.

Sci Adv. 2020 Mar 18;6(12):eaay3423. doi: 10.1126/sciadv.aay3423. eCollection 2020 Mar.

3.

Assessment of Radio-Induced Damage in Endothelial Cells Irradiated with 40 kVp, 220 kVp, and 4 MV X-rays by Means of Micro and Nanodosimetric Calculations.

Tang N, Bueno M, Meylan S, Perrot Y, Tran HN, Freneau A, Dos Santos M, Vaurijoux A, Gruel G, Bernal MA, Bordage MC, Emfietzoglou D, Francis Z, Guatelli S, Ivanchenko V, Karamitros M, Kyriakou I, Shin WG, Incerti S, Villagrasa C.

Int J Mol Sci. 2019 Dec 9;20(24). pii: E6204. doi: 10.3390/ijms20246204.

4.

Determination of fast neutron RBE using a fully mechanistic computational model.

Zabihi A, Tello J, Incerti S, Francis Z, Forozani G, Semsarha F, Moslehi A, Bernal MA.

Appl Radiat Isot. 2020 Feb;156:108952. doi: 10.1016/j.apradiso.2019.108952. Epub 2019 Nov 2.

PMID:
31735447
5.

Computational approach to determine the relative biological effectiveness of fast neutrons using the Geant4-DNA toolkit and a DNA atomic model from the Protein Data Bank.

Zabihi A, Incerti S, Francis Z, Forozani G, Semsarha F, Moslehi A, Rezaeian P, Bernal MA.

Phys Rev E. 2019 May;99(5-1):052404. doi: 10.1103/PhysRevE.99.052404.

PMID:
31212425
6.

Evaluation of early radiation DNA damage in a fractal cell nucleus model using Geant4-DNA.

Sakata D, Lampe N, Karamitros M, Kyriakou I, Belov O, Bernal MA, Bolst D, Bordage MC, Breton V, Brown JMC, Francis Z, Ivanchenko V, Meylan S, Murakami K, Okada S, Petrovic I, Ristic-Fira A, Santin G, Sarramia D, Sasaki T, Shin WG, Tang N, Tran HN, Villagrasa C, Emfietzoglou D, Nieminen P, Guatelli S, Incerti S.

Phys Med. 2019 Jun;62:152-157. doi: 10.1016/j.ejmp.2019.04.010. Epub 2019 May 17.

PMID:
31109825
7.

Genomic, ecological, and morphological approaches to investigating species limits: A case study in modern taxonomy from Tropical Eastern Pacific surgeonfishes.

Ludt WB, Bernal MA, Kenworthy E, Salas E, Chakrabarty P.

Ecol Evol. 2019 Mar 5;9(7):4001-4012. doi: 10.1002/ece3.5029. eCollection 2019 Apr.

8.

Comparative transcriptomics of sympatric species of coral reef fishes (genus: Haemulon).

Bernal MA, Dixon GB, Matz MV, Rocha LA.

PeerJ. 2019 Mar 1;7:e6541. doi: 10.7717/peerj.6541. eCollection 2019.

9.

A New Standard DNA Damage (SDD) Data Format.

Schuemann J, McNamara AL, Warmenhoven JW, Henthorn NT, Kirkby KJ, Merchant MJ, Ingram S, Paganetti H, Held KD, Ramos-Mendez J, Faddegon B, Perl J, Goodhead DT, Plante I, Rabus H, Nettelbeck H, Friedland W, Kundrát P, Ottolenghi A, Baiocco G, Barbieri S, Dingfelder M, Incerti S, Villagrasa C, Bueno M, Bernal MA, Guatelli S, Sakata D, Brown JMC, Francis Z, Kyriakou I, Lampe N, Ballarini F, Carante MP, Davídková M, Štěpán V, Jia X, Cucinotta FA, Schulte R, Stewart RD, Carlson DJ, Galer S, Kuncic Z, Lacombe S, Milligan J, Cho SH, Sawakuchi G, Inaniwa T, Sato T, Li W, Solov'yov AV, Surdutovich E, Durante M, Prise KM, McMahon SJ.

Radiat Res. 2019 Jan;191(1):76-92. doi: 10.1667/RR15209.1. Epub 2018 Nov 8.

10.

Phenotypic and molecular consequences of stepwise temperature increase across generations in a coral reef fish.

Bernal MA, Donelson JM, Veilleux HD, Ryu T, Munday PL, Ravasi T.

Mol Ecol. 2018 Nov;27(22):4516-4528. doi: 10.1111/mec.14884. Epub 2018 Oct 24.

PMID:
30267545
11.

Accounting for radiation-induced indirect damage on DNA with the Geant 4-DNA code.

de la Fuente Rosales L, Incerti S, Francis Z, Bernal MA.

Phys Med. 2018 Jul;51:108-116. doi: 10.1016/j.ejmp.2018.06.006. Epub 2018 Jun 19.

PMID:
29908994
12.

Geant4-DNA example applications for track structure simulations in liquid water: A report from the Geant4-DNA Project.

Incerti S, Kyriakou I, Bernal MA, Bordage MC, Francis Z, Guatelli S, Ivanchenko V, Karamitros M, Lampe N, Lee SB, Meylan S, Min CH, Shin WG, Nieminen P, Sakata D, Tang N, Villagrasa C, Tran HN, Brown JMC.

Med Phys. 2018 Jun 14. doi: 10.1002/mp.13048. [Epub ahead of print]

PMID:
29901835
13.

Targeted alpha therapy with 212Pb or 225Ac: Change in RBE from daughter migration.

Ackerman NL, de la Fuente Rosales L, Falzone N, Vallis KA, Bernal MA.

Phys Med. 2018 Jul;51:91-98. doi: 10.1016/j.ejmp.2018.05.020. Epub 2018 May 25.

PMID:
29807854
14.

Arsenic adsorption and plant availability in an agricultural soil irrigated with As-rich water: Effects of Fe-rich amendments and organic and inorganic fertilisers.

Arco-Lázaro E, Pardo T, Clemente R, Bernal MP.

J Environ Manage. 2018 Mar 1;209:262-272. doi: 10.1016/j.jenvman.2017.12.042. Epub 2018 Jan 4.

PMID:
29306143
15.

Dosimetric evaluation of radionuclides for VCAM-1-targeted radionuclide therapy of early brain metastases.

Falzone N, Ackerman NL, Rosales LF, Bernal MA, Liu X, Peeters SG, Soto MS, Corroyer-Dulmont A, Bernaudin M, Grimoin E, Touzani O, Sibson NR, Vallis KA.

Theranostics. 2018 Jan 1;8(1):292-303. doi: 10.7150/thno.22217. eCollection 2018.

16.

Numerical insight into the Dual Radiation Action Theory.

Tello JJ, Incerti S, Francis Z, Tran H, Bernal MA.

Phys Med. 2017 Nov;43:120-126. doi: 10.1016/j.ejmp.2017.10.022. Epub 2017 Nov 6.

PMID:
29195554
17.

TDDFT-Based Study on the Proton-DNA Collision.

Seraide R, Bernal MA, Brunetto G, de Giovannini U, Rubio A.

J Phys Chem B. 2017 Aug 3;121(30):7276-7283. doi: 10.1021/acs.jpcb.7b04934. Epub 2017 Jul 24.

PMID:
28679206
18.

Introgression and selection shaped the evolutionary history of sympatric sister-species of coral reef fishes (genus: Haemulon).

Bernal MA, Gaither MR, Simison WB, Rocha LA.

Mol Ecol. 2017 Jan;26(2):639-652. doi: 10.1111/mec.13937. Epub 2016 Dec 25.

PMID:
27873385
19.

Impact of photon cross section uncertainties on Monte Carlo-determined depth-dose distributions.

Aguirre E, David M, deAlmeida CE, Bernal MA.

Phys Med. 2016 Sep;32(9):1065-71. doi: 10.1016/j.ejmp.2016.08.002. Epub 2016 Aug 5.

PMID:
27501874
20.

Track structure modeling in liquid water: A review of the Geant4-DNA very low energy extension of the Geant4 Monte Carlo simulation toolkit.

Bernal MA, Bordage MC, Brown JMC, Davídková M, Delage E, El Bitar Z, Enger SA, Francis Z, Guatelli S, Ivanchenko VN, Karamitros M, Kyriakou I, Maigne L, Meylan S, Murakami K, Okada S, Payno H, Perrot Y, Petrovic I, Pham QT, Ristic-Fira A, Sasaki T, Štěpán V, Tran HN, Villagrasa C, Incerti S.

Phys Med. 2015 Dec;31(8):861-874. doi: 10.1016/j.ejmp.2015.10.087. Epub 2015 Dec 1. Review.

PMID:
26653251
21.

Two deep evolutionary lineages in the circumtropical glasseye Heteropriacanthus cruentatus (Teleostei, Priacanthidae) with admixture in the south-western Indian Ocean.

Gaither MR, Bernal MA, Fernandez-Silva I, Mwale M, Jones SA, Rocha C, Rocha LA.

J Fish Biol. 2015 Sep;87(3):715-27. doi: 10.1111/jfb.12754.

PMID:
26333139
22.

The Influence of DNA Configuration on the Direct Strand Break Yield.

Bernal MA, deAlmeida CE, Incerti S, Champion C, Ivanchenko V, Francis Z.

Comput Math Methods Med. 2015;2015:417501. doi: 10.1155/2015/417501. Epub 2015 Jun 1.

23.

Population Structure and Seasonal Migration of the Spotted Eagle Ray, Aetobatus narinari.

Sellas AB, Bassos-Hull K, Pérez-Jiménez JC, Angulo-Valdés JA, Bernal MA, Hueter RE.

J Hered. 2015 May-Jun;106(3):266-75. doi: 10.1093/jhered/esv011. Epub 2015 Mar 30.

PMID:
25825312
24.

Genomic signatures of geographic isolation and natural selection in coral reef fishes.

Gaither MR, Bernal MA, Coleman RR, Bowen BW, Jones SA, Simison WB, Rocha LA.

Mol Ecol. 2015 Apr;24(7):1543-57. doi: 10.1111/mec.13129.

PMID:
25753379
25.

Long-term sperm storage in the brownbanded bamboo shark Chiloscyllium punctatum.

Bernal MA, Sinai NL, Rocha C, Gaither MR, Dunker F, Rocha LA.

J Fish Biol. 2015 Mar;86(3):1171-6. doi: 10.1111/jfb.12606. Epub 2014 Dec 28.

PMID:
25545440
26.

A feasibility study of Fricke dosimetry as an absorbed dose to water standard for 192Ir HDR sources.

deAlmeida CE, Ochoa R, Lima MC, David MG, Pires EJ, Peixoto JG, Salata C, Bernal MA.

PLoS One. 2014 Dec 18;9(12):e115155. doi: 10.1371/journal.pone.0115155. eCollection 2014.

27.

On the consistency of Monte Carlo track structure DNA damage simulations.

Pater P, Seuntjens J, El Naqa I, Bernal MA.

Med Phys. 2014 Dec;41(12):121708. doi: 10.1118/1.4901555.

PMID:
25471955
28.

Carbon ion fragmentation effects on the nanometric level behind the Bragg peak depth.

Francis Z, Seif E, Incerti S, Champion C, Karamitros M, Bernal MA, Ivanchenko VN, Mantero A, Tran HN, El Bitar Z.

Phys Med Biol. 2014 Dec 21;59(24):7691-702. doi: 10.1088/0031-9155/59/24/7691.

PMID:
25415376
29.

A rock engraving made by Neanderthals in Gibraltar.

Rodríguez-Vidal J, d'Errico F, Giles Pacheco F, Blasco R, Rosell J, Jennings RP, Queffelec A, Finlayson G, Fa DA, Gutiérrez López JM, Carrión JS, Negro JJ, Finlayson S, Cáceres LM, Bernal MA, Fernández Jiménez S, Finlayson C.

Proc Natl Acad Sci U S A. 2014 Sep 16;111(37):13301-6. doi: 10.1073/pnas.1411529111. Epub 2014 Sep 2.

30.

Emergent patterns of population genetic structure for a coral reef community.

Selkoe KA, Gaggiotti OE, Bowen BW, Toonen RJ; ToBo Laboratory.

Mol Ecol. 2014 Jun;23(12):3064-79. doi: 10.1111/mec.12804.

PMID:
24866831
31.

From Zinnia to Arabidopsis: approaching the involvement of peroxidases in lignification.

Novo-Uzal E, Fernández-Pérez F, Herrero J, Gutiérrez J, Gómez-Ros LV, Bernal MÁ, Díaz J, Cuello J, Pomar F, Pedreño MÁ.

J Exp Bot. 2013 Sep;64(12):3499-518. doi: 10.1093/jxb/ert221. Review.

PMID:
23956408
32.

Variation in lithic technological strategies among the Neanderthals of Gibraltar.

Shipton C, Clarkson C, Bernal MA, Boivin N, Finlayson C, Finlayson G, Fa D, Pacheco FG, Petraglia M.

PLoS One. 2013 Jun 6;8(6):e65185. doi: 10.1371/journal.pone.0065185. Print 2013.

33.

Living in the past: phylogeography and population histories of Indo-Pacific wrasses (genus Halichoeres) in shallow lagoons versus outer reef slopes.

Ludt WB, Bernal MA, Bowen BW, Rocha LA.

PLoS One. 2012;7(6):e38042. doi: 10.1371/journal.pone.0038042. Epub 2012 Jun 6.

34.

Evaluation of the mean energy deposit during the impact of charged particles on liquid water.

Bernal MA.

Phys Med Biol. 2012 Apr 7;57(7):1745-57. doi: 10.1088/0031-9155/57/7/1745. Epub 2012 Mar 9.

PMID:
22407219
35.

Monte Carlo simulation of energy-deposit clustering for ions of the same LET in liquid water.

Francis Z, Incerti S, Ivanchenko V, Champion C, Karamitros M, Bernal MA, El Bitar Z.

Phys Med Biol. 2012 Jan 7;57(1):209-24. doi: 10.1088/0031-9155/57/1/209.

PMID:
22156022
36.

Estimation of the RBE of mammography-quality beams using a combination of a Monte Carlo code with a B-DNA geometrical model.

Bernal MA, deAlmeida CE, David M, Pires E.

Phys Med Biol. 2011 Dec 7;56(23):7393-403. doi: 10.1088/0031-9155/56/23/004. Epub 2011 Nov 4.

PMID:
22056816
37.

Experimental and Monte Carlo-simulated spectra of standard mammography-quality beams.

David MG, Pires EJ, Bernal MA, Peixoto JG, Dealmeida CE.

Br J Radiol. 2012 May;85(1013):629-35. doi: 10.1259/bjr/73088072. Epub 2011 Oct 18.

38.

The roots of diversity: below ground species richness and rooting distributions in a tropical forest revealed by DNA barcodes and inverse modeling.

Jones FA, Erickson DL, Bernal MA, Bermingham E, Kress WJ, Herre EA, Muller-Landau HC, Turner BL.

PLoS One. 2011;6(9):e24506. doi: 10.1371/journal.pone.0024506. Epub 2011 Sep 19.

39.

The invariance of the total direct DNA strand break yield.

Bernal MA, deAlmeida CE, Sampaio C, Incerti S, Champion C, Nieminen P.

Med Phys. 2011 Jul;38(7):4147-53.

PMID:
21859016
40.

Comparison of GEANT4 very low energy cross section models with experimental data in water.

Incerti S, Ivanchenko A, Karamitros M, Mantero A, Moretto P, Tran HN, Mascialino B, Champion C, Ivanchenko VN, Bernal MA, Francis Z, Villagrasa C, Baldacchin G, Guèye P, Capra R, Nieminen P, Zacharatou C.

Med Phys. 2010 Sep;37(9):4692-708.

PMID:
20964188
41.

Erratum: "An investigation on the capabilities of the PENELOPE MC code in nanodosimetry" [Med. Phys. 36, 620-625 (2009)].

Bernal MA, Liendo JA.

Med Phys. 2010 Aug;37(8):4520. doi: 10.1118/1.3460317. No abstract available.

PMID:
28524314
42.

An investigation on the capabilities of the PENELOPE MC code in nanodosimetry.

Bernal MA, Liendo JA.

Med Phys. 2009 Feb;36(2):620-5. Erratum in: Med Phys. 2010 Aug;37(8):4520. Med Phys. 2010 Aug;37(8):4520.

PMID:
19292002
43.

[Basic physical principles of ultrasonography, anatomy of the musculoskeletal system and ecographic artifacts].

Vargas A, Amescua-Guerra LM, Bernal MA, Pineda C.

Acta Ortop Mex. 2008 Nov-Dec;22(6):361-73. Review. Spanish.

44.

The presence of sinapyl lignin in Ginkgo biloba cell cultures changes our views of the evolution of lignin biosynthesis.

Uzal EN, Gómez Ros LV, Pomar F, Bernal MA, Paradela A, Albar JP, Ros Barceló A.

Physiol Plant. 2009 Feb;135(2):196-213. doi: 10.1111/j.1399-3054.2008.01185.x. Epub 2008 Nov 26.

PMID:
19055540
45.

Adaptive recurrent neural control for nonlinear system tracking.

Sanchez EN, Bernal MA.

IEEE Trans Syst Man Cybern B Cybern. 2000;30(6):886-9. doi: 10.1109/3477.891150.

PMID:
18252419
46.

Recycling of nutrients from organic wastes and treatment options. RAMIRAN'04.

Bernal MA, Moral R, Houot S.

Bioresour Technol. 2007 Dec;98(17):3181-3. Epub 2007 Apr 23. No abstract available.

PMID:
17452100
47.

Structural motifs of syringyl peroxidases are conserved during angiosperm evolution.

Gómez Ros LV, Aznar-Asensio GJ, Hernandez JA, Bernal MA, Núñez-Flores MJ, Cuello J, Ros Barceló A.

J Agric Food Chem. 2007 May 16;55(10):4131-8. Epub 2007 Apr 18.

PMID:
17439232
48.

Capsaicinoids in vegetative organs of Capsicum annuum L. in relation to fruiting.

Estrada B, Bernal MA, Díaz J, Pomar F, Merino F.

J Agric Food Chem. 2002 Feb 27;50(5):1188-91.

PMID:
11853502
49.

Urinary excretion of trace elements in humans after sodium 2,3-dimercaptopropane-1-sulfonate challenge test.

Torres-Alanís O, Garza-Ocañas L, Bernal MA, Piñeyro-López A.

J Toxicol Clin Toxicol. 2000;38(7):697-700.

PMID:
11192456
50.

Fruit development in Capsicum annuum: changes in capsaicin, lignin, free phenolics, and peroxidase patterns.

Estrada B, Bernal MA, Díaz J, Pomar F, Merino F.

J Agric Food Chem. 2000 Dec;48(12):6234-9.

PMID:
11141281

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