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Items: 1 to 50 of 153

1.

Toxoplasma gondii infection drives conversion of NK cells into ILC1-like cells.

Park E, Patel S, Wang Q, Andhey P, Zaitsev K, Porter S, Hershey M, Bern M, Plougastel-Douglas B, Collins P, Colonna M, Murphy KM, Oltz E, Artyomov M, Sibley LD, Yokoyama WM.

Elife. 2019 Aug 8;8. pii: e47605. doi: 10.7554/eLife.47605.

2.

Alphabet Projection of Spectra.

Kreitzberg PA, Bern M, Shu Q, Yang F, Serang O.

J Proteome Res. 2019 Sep 6;18(9):3268-3281. doi: 10.1021/acs.jproteome.9b00216. Epub 2019 Jul 29.

PMID:
31318211
3.

Network-based prediction of polygenic disease genes involved in cell motility.

Bern M, King A, Applewhite DA, Ritz A.

BMC Bioinformatics. 2019 Jun 20;20(Suppl 12):313. doi: 10.1186/s12859-019-2834-1.

4.

Native and Denaturing MS Protein Deconvolution for Biopharma: Monoclonal Antibodies and Antibody-Drug Conjugates to Polydisperse Membrane Proteins and Beyond.

Campuzano IDG, Robinson JH, Hui JO, Shi SD, Netirojjanakul C, Nshanian M, Egea PF, Lippens JL, Bagal D, Loo JA, Bern M.

Anal Chem. 2019 Aug 6;91(15):9472-9480. doi: 10.1021/acs.analchem.9b00062. Epub 2019 Jul 12.

PMID:
31194911
5.

Inducible down-regulation of MHC class I results in natural killer cell tolerance.

Bern MD, Parikh BA, Yang L, Beckman DL, Poursine-Laurent J, Yokoyama WM.

J Exp Med. 2019 Jan 7;216(1):99-116. doi: 10.1084/jem.20181076. Epub 2018 Dec 17.

6.

Viral MHCI inhibition evades tissue-resident memory T cell formation and responses.

Lauron EJ, Yang L, Harvey IB, Sojka DK, Williams GD, Paley MA, Bern MD, Park E, Victorino F, Boon ACM, Yokoyama WM.

J Exp Med. 2019 Jan 7;216(1):117-132. doi: 10.1084/jem.20181077. Epub 2018 Dec 17.

7.

Differential Quantitative Determination of Site-Specific Intact N-Glycopeptides in Serum Haptoglobin between Hepatocellular Carcinoma and Cirrhosis Using LC-EThcD-MS/MS.

Zhu J, Chen Z, Zhang J, An M, Wu J, Yu Q, Skilton SJ, Bern M, Ilker Sen K, Li L, Lubman DM.

J Proteome Res. 2019 Jan 4;18(1):359-371. doi: 10.1021/acs.jproteome.8b00654. Epub 2018 Oct 29.

PMID:
30370771
8.

Localization of Protein Complex Bound Ligands by Surface-Induced Dissociation High-Resolution Mass Spectrometry.

Busch F, VanAernum ZL, Ju Y, Yan J, Gilbert JD, Quintyn RS, Bern M, Wysocki VH.

Anal Chem. 2018 Nov 6;90(21):12796-12801. doi: 10.1021/acs.analchem.8b03263. Epub 2018 Oct 26.

PMID:
30299922
9.

Human and mouse albumin bind their respective neonatal Fc receptors differently.

Nilsen J, Bern M, Sand KMK, Grevys A, Dalhus B, Sandlie I, Andersen JT.

Sci Rep. 2018 Oct 2;8(1):14648. doi: 10.1038/s41598-018-32817-0.

10.

Identification of multiple proteoforms biomarkers on clinical samples by routine Top-Down approaches.

Vialaret J, Schmit PO, Lehmann S, Gabelle A, Wood J, Bern M, Paape R, Suckau D, Kruppa G, Hirtz C.

Data Brief. 2018 Mar 31;18:1013-1021. doi: 10.1016/j.dib.2018.03.114. eCollection 2018 Jun.

11.

Identification of Sialic Acid Linkages on Intact Glycopeptides via Differential Chemical Modification Using IntactGIG-HILIC.

Yang S, Wu WW, Shen RF, Bern M, Cipollo J.

J Am Soc Mass Spectrom. 2018 Jun;29(6):1273-1283. doi: 10.1007/s13361-018-1931-0. Epub 2018 Apr 12.

PMID:
29651731
12.

Extending Proteome Coverage by Combining MS/MS Methods and a Modified Bioinformatics Platform Adapted for Database Searching of Positive and Negative Polarity 193 nm Ultraviolet Photodissociation Mass Spectra.

Greer SM, Bern M, Becker C, Brodbelt JS.

J Proteome Res. 2018 Apr 6;17(4):1340-1347. doi: 10.1021/acs.jproteome.7b00673. Epub 2018 Mar 2.

PMID:
29480007
13.

A human endothelial cell-based recycling assay for screening of FcRn targeted molecules.

Grevys A, Nilsen J, Sand KMK, Daba MB, Øynebråten I, Bern M, McAdam MB, Foss S, Schlothauer T, Michaelsen TE, Christianson GJ, Roopenian DC, Blumberg RS, Sandlie I, Andersen JT.

Nat Commun. 2018 Feb 12;9(1):621. doi: 10.1038/s41467-018-03061-x.

14.

Parsimonious Charge Deconvolution for Native Mass Spectrometry.

Bern M, Caval T, Kil YJ, Tang W, Becker C, Carlson E, Kletter D, Sen KI, Galy N, Hagemans D, Franc V, Heck AJR.

J Proteome Res. 2018 Mar 2;17(3):1216-1226. doi: 10.1021/acs.jproteome.7b00839. Epub 2018 Feb 8.

15.
16.

Immunoreceptor tyrosine-based inhibitory motif-dependent functions of an MHC class I-specific NK cell receptor.

Bern MD, Beckman DL, Ebihara T, Taffner SM, Poursine-Laurent J, White JM, Yokoyama WM.

Proc Natl Acad Sci U S A. 2017 Oct 3;114(40):E8440-E8447. doi: 10.1073/pnas.1713064114. Epub 2017 Sep 18.

17.

A Life-Threatening Cause of Colitis.

Jaswani TS, Grider DJ, Bern MJ.

Gastroenterology. 2018 Jan;154(1):35-36. doi: 10.1053/j.gastro.2017.08.072. Epub 2017 Sep 14. No abstract available.

PMID:
28918915
18.

Analysis of Proteins, Protein Complexes, and Organellar Proteomes Using Sheathless Capillary Zone Electrophoresis - Native Mass Spectrometry.

Belov AM, Viner R, Santos MR, Horn DM, Bern M, Karger BL, Ivanov AR.

J Am Soc Mass Spectrom. 2017 Dec;28(12):2614-2634. doi: 10.1007/s13361-017-1781-1. Epub 2017 Sep 5.

19.

Towards a routine application of Top-Down approaches for label-free discovery workflows.

Schmit PO, Vialaret J, Wessels HJCT, van Gool AJ, Lehmann S, Gabelle A, Wood J, Bern M, Paape R, Suckau D, Kruppa G, Hirtz C.

J Proteomics. 2018 Mar 20;175:12-26. doi: 10.1016/j.jprot.2017.08.003. Epub 2017 Aug 30.

PMID:
28855124
20.

Expansion for the Brachylophosaurus canadensis Collagen I Sequence and Additional Evidence of the Preservation of Cretaceous Protein.

Schroeter ER, DeHart CJ, Cleland TP, Zheng W, Thomas PM, Kelleher NL, Bern M, Schweitzer MH.

J Proteome Res. 2017 Feb 3;16(2):920-932. doi: 10.1021/acs.jproteome.6b00873. Epub 2017 Jan 23.

21.

Automated Antibody De Novo Sequencing and Its Utility in Biopharmaceutical Discovery.

Sen KI, Tang WH, Nayak S, Kil YJ, Bern M, Ozoglu B, Ueberheide B, Davis D, Becker C.

J Am Soc Mass Spectrom. 2017 May;28(5):803-810. doi: 10.1007/s13361-016-1580-0. Epub 2017 Jan 19.

22.

Characterizing Protein Glycosylation through On-Chip Glycan Modification and Probing.

Reatini BS, Ensink E, Liau B, Sinha JY, Powers TW, Partyka K, Bern M, Brand RE, Rudd PM, Kletter D, Drake R, Haab BB.

Anal Chem. 2016 Dec 6;88(23):11584-11592. Epub 2016 Nov 15.

23.

Glycoproteomics Reveals Decorin Peptides With Anti-Myostatin Activity in Human Atrial Fibrillation.

Barallobre-Barreiro J, Gupta SK, Zoccarato A, Kitazume-Taneike R, Fava M, Yin X, Werner T, Hirt MN, Zampetaki A, Viviano A, Chong M, Bern M, Kourliouros A, Domenech N, Willeit P, Shah AM, Jahangiri M, Schaefer L, Fischer JW, Iozzo RV, Viner R, Thum T, Heineke J, Kichler A, Otsu K, Mayr M.

Circulation. 2016 Sep 13;134(11):817-32. doi: 10.1161/CIRCULATIONAHA.115.016423. Epub 2016 Aug 24.

24.

Towards an automated analysis of bacterial peptidoglycan structure.

Bern M, Beniston R, Mesnage S.

Anal Bioanal Chem. 2017 Jan;409(2):551-560. doi: 10.1007/s00216-016-9857-5. Epub 2016 Aug 13.

25.

Toward Automated N-Glycopeptide Identification in Glycoproteomics.

Lee LY, Moh ES, Parker BL, Bern M, Packer NH, Thaysen-Andersen M.

J Proteome Res. 2016 Oct 7;15(10):3904-3915. Epub 2016 Sep 2.

PMID:
27519006
26.

Full-Featured Search Algorithm for Negative Electron-Transfer Dissociation.

Riley NM, Bern M, Westphall MS, Coon JJ.

J Proteome Res. 2016 Aug 5;15(8):2768-76. doi: 10.1021/acs.jproteome.6b00319. Epub 2016 Jul 22.

27.

De Novo Sequencing and Resurrection of a Human Astrovirus-Neutralizing Antibody.

Bogdanoff WA, Morgenstern D, Bern M, Ueberheide BM, Sanchez-Fauquier A, DuBois RM.

ACS Infect Dis. 2016 May 13;2(5):313-321. Epub 2016 Mar 14.

28.

TRIM21 Immune Signaling Is More Sensitive to Antibody Affinity Than Its Neutralization Activity.

Foss S, Watkinson RE, Grevys A, McAdam MB, Bern M, Høydahl LS, Dalhus B, Michaelsen TE, Sandlie I, James LC, Andersen JT.

J Immunol. 2016 Apr 15;196(8):3452-3459. doi: 10.4049/jimmunol.1502601. Epub 2016 Mar 9.

29.

Enhanced FcRn-dependent transepithelial delivery of IgG by Fc-engineering and polymerization.

Foss S, Grevys A, Sand KMK, Bern M, Blundell P, Michaelsen TE, Pleass RJ, Sandlie I, Andersen JT.

J Control Release. 2016 Feb 10;223:42-52. doi: 10.1016/j.jconrel.2015.12.033. Epub 2015 Dec 21.

PMID:
26718855
30.

Mass Spectrometry and Antibody-Based Characterization of Blood Vessels from Brachylophosaurus canadensis.

Cleland TP, Schroeter ER, Zamdborg L, Zheng W, Lee JE, Tran JC, Bern M, Duncan MB, Lebleu VS, Ahlf DR, Thomas PM, Kalluri R, Kelleher NL, Schweitzer MH.

J Proteome Res. 2015 Dec 4;14(12):5252-62. doi: 10.1021/acs.jproteome.5b00675. Epub 2015 Nov 23.

31.

Low dose compared to variable dose Warfarin and to Fondaparinux as prophylaxis for thromboembolism after elective hip or knee replacement surgery; a randomized, prospective study.

Bern MM, Hazel D, Deeran E, Richmond JR, Ward DM, Spitz DJ, Mattingly DA, Bono JV, Berezin RH, Hou L, Miley GB, Bierbaum BE.

Thromb J. 2015 Oct 7;13:32. doi: 10.1186/s12959-015-0062-0. eCollection 2015.

32.

Definitive Characterization of CA 19-9 in Resectable Pancreatic Cancer Using a Reference Set of Serum and Plasma Specimens.

Haab BB, Huang Y, Balasenthil S, Partyka K, Tang H, Anderson M, Allen P, Sasson A, Zeh H, Kaul K, Kletter D, Ge S, Bern M, Kwon R, Blasutig I, Srivastava S, Frazier ML, Sen S, Hollingsworth MA, Rinaudo JA, Killary AM, Brand RE.

PLoS One. 2015 Oct 2;10(10):e0139049. doi: 10.1371/journal.pone.0139049. eCollection 2015.

33.

Runx3 specifies lineage commitment of innate lymphoid cells.

Ebihara T, Song C, Ryu SH, Plougastel-Douglas B, Yang L, Levanon D, Groner Y, Bern MD, Stappenbeck TS, Colonna M, Egawa T, Yokoyama WM.

Nat Immunol. 2015 Nov;16(11):1124-33. doi: 10.1038/ni.3272. Epub 2015 Sep 28.

34.

Extended O-GlcNAc on HLA Class-I-Bound Peptides.

Marino F, Bern M, Mommen GPM, Leney AC, van Gaans-van den Brink JAM, Bonvin AMJJ, Becker C, van Els CACM, Heck AJR.

J Am Chem Soc. 2015 Sep 2;137(34):10922-10925. doi: 10.1021/jacs.5b06586. Epub 2015 Aug 19.

35.

The role of albumin receptors in regulation of albumin homeostasis: Implications for drug delivery.

Bern M, Sand KM, Nilsen J, Sandlie I, Andersen JT.

J Control Release. 2015 Aug 10;211:144-62. doi: 10.1016/j.jconrel.2015.06.006. Epub 2015 Jun 6. Review.

PMID:
26055641
36.

Benchmark study of automatic annotation of MALDI-TOF N-glycan profiles.

Brito AE, Kletter D, Singhal M, Bern M.

J Proteomics. 2015 Nov 3;129:71-77. doi: 10.1016/j.jprot.2015.05.028. Epub 2015 Jun 3.

37.

Effects of anticoagulation on markers of activation of clotting following major orthopedic surgery.

Bern MM, Hazel D, Reilly DT, Adcock DM, Hou L.

Int J Lab Hematol. 2015 Oct;37(5):673-9. doi: 10.1111/ijlh.12384. Epub 2015 May 15.

38.

Upregulation of glycans containing 3' fucose in a subset of pancreatic cancers uncovered using fusion-tagged lectins.

Singh S, Pal K, Yadav J, Tang H, Partyka K, Kletter D, Hsueh P, Ensink E, Kc B, Hostetter G, Xu HE, Bern M, Smith DF, Mehta AS, Brand R, Melcher K, Haab BB.

J Proteome Res. 2015 Jun 5;14(6):2594-605. doi: 10.1021/acs.jproteome.5b00142. Epub 2015 May 12.

39.

Fc Engineering of Human IgG1 for Altered Binding to the Neonatal Fc Receptor Affects Fc Effector Functions.

Grevys A, Bern M, Foss S, Bratlie DB, Moen A, Gunnarsen KS, Aase A, Michaelsen TE, Sandlie I, Andersen JT.

J Immunol. 2015 Jun 1;194(11):5497-508. doi: 10.4049/jimmunol.1401218. Epub 2015 Apr 22.

40.

Exploring the specificities of glycan-binding proteins using glycan array data and the GlycoSearch software.

Kletter D, Curnutte B, Maupin KA, Bern M, Haab BB.

Methods Mol Biol. 2015;1273:203-14. doi: 10.1007/978-1-4939-2343-4_15.

41.

Glycan motif profiling reveals plasma sialyl-lewis x elevations in pancreatic cancers that are negative for sialyl-lewis A.

Tang H, Singh S, Partyka K, Kletter D, Hsueh P, Yadav J, Ensink E, Bern M, Hostetter G, Hartman D, Huang Y, Brand RE, Haab BB.

Mol Cell Proteomics. 2015 May;14(5):1323-33. doi: 10.1074/mcp.M114.047837. Epub 2015 Mar 2.

42.

The detection and discovery of glycan motifs in biological samples using lectins and antibodies: new methods and opportunities.

Tang H, Hsueh P, Kletter D, Bern M, Haab B.

Adv Cancer Res. 2015;126:167-202. doi: 10.1016/bs.acr.2014.11.003. Epub 2015 Feb 7. Review.

43.

Unraveling the Interaction between FcRn and Albumin: Opportunities for Design of Albumin-Based Therapeutics.

Sand KM, Bern M, Nilsen J, Noordzij HT, Sandlie I, Andersen JT.

Front Immunol. 2015 Jan 26;5:682. doi: 10.3389/fimmu.2014.00682. eCollection 2014. Review.

44.

Sheathless capillary electrophoresis-tandem mass spectrometry for top-down characterization of Pyrococcus furiosus proteins on a proteome scale.

Han X, Wang Y, Aslanian A, Bern M, Lavallée-Adam M, Yates JR 3rd.

Anal Chem. 2014 Nov 18;86(22):11006-12. doi: 10.1021/ac503439n. Epub 2014 Oct 30.

45.

Interaction with both domain I and III of albumin is required for optimal pH-dependent binding to the neonatal Fc receptor (FcRn).

Sand KM, Bern M, Nilsen J, Dalhus B, Gunnarsen KS, Cameron J, Grevys A, Bunting K, Sandlie I, Andersen JT.

J Biol Chem. 2014 Dec 12;289(50):34583-94. doi: 10.1074/jbc.M114.587675. Epub 2014 Oct 24.

46.

Dissection of the neonatal Fc receptor (FcRn)-albumin interface using mutagenesis and anti-FcRn albumin-blocking antibodies.

Sand KM, Dalhus B, Christianson GJ, Bern M, Foss S, Cameron J, Sleep D, Bjørås M, Roopenian DC, Sandlie I, Andersen JT.

J Biol Chem. 2014 Jun 13;289(24):17228-39. doi: 10.1074/jbc.M113.522565. Epub 2014 Apr 24.

47.

A disulfide tether stabilizes the block of sodium channels by the conotoxin μO§-GVIIJ.

Gajewiak J, Azam L, Imperial J, Walewska A, Green BR, Bandyopadhyay PK, Raghuraman S, Ueberheide B, Bern M, Zhou HM, Minassian NA, Hagan RH, Flinspach M, Liu Y, Bulaj G, Wickenden AD, Olivera BM, Yoshikami D, Zhang MM.

Proc Natl Acad Sci U S A. 2014 Feb 18;111(7):2758-63. doi: 10.1073/pnas.1324189111. Epub 2014 Feb 4.

48.

Stable pausing by RNA polymerase II provides an opportunity to target and integrate regulatory signals.

Henriques T, Gilchrist DA, Nechaev S, Bern M, Muse GW, Burkholder A, Fargo DC, Adelman K.

Mol Cell. 2013 Nov 21;52(4):517-28. doi: 10.1016/j.molcel.2013.10.001. Epub 2013 Oct 31.

49.

N-linked glycan profiling of GGTA1/CMAH knockout pigs identifies new potential carbohydrate xenoantigens.

Burlak C, Bern M, Brito AE, Isailovic D, Wang ZY, Estrada JL, Li P, Tector AJ.

Xenotransplantation. 2013 Sep-Oct;20(5):277-91. doi: 10.1111/xen.12047. Epub 2013 Sep 5.

50.

Prediction of glycan motifs using quantitative analysis of multi-lectin binding: Motifs on MUC1 produced by cultured pancreatic cancer cells.

McCarter C, Kletter D, Tang H, Partyka K, Ma Y, Singh S, Yadav J, Bern M, Haab BB.

Proteomics Clin Appl. 2013 Oct;7(9-10):632-41. doi: 10.1002/prca.201300069. Epub 2013 Sep 13.

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