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The effects of a wool hydrolysate on short-chain fatty acid production and fecal microbial composition in the domestic cat (Felis catus).

Deb-Choudhury S, Bermingham EN, Young W, Barnett MPG, Knowles SO, Harland D, Clerens S, Dyer JM.

Food Funct. 2018 Aug 15;9(8):4107-4121. doi: 10.1039/c7fo02004j.


The Fecal Microbiota in the Domestic Cat (Felis catus) Is Influenced by Interactions Between Age and Diet; A Five Year Longitudinal Study.

Bermingham EN, Young W, Butowski CF, Moon CD, Maclean PH, Rosendale D, Cave NJ, Thomas DG.

Front Microbiol. 2018 Jun 19;9:1231. doi: 10.3389/fmicb.2018.01231. eCollection 2018.


Metagenomic insights into the roles of Proteobacteria in the gastrointestinal microbiomes of healthy dogs and cats.

Moon CD, Young W, Maclean PH, Cookson AL, Bermingham EN.

Microbiologyopen. 2018 Jun 17:e00677. doi: 10.1002/mbo3.677. [Epub ahead of print] Review.


Effect of kibble and raw meat diets on peripheral blood mononuclear cell gene expression profile in dogs.

Anderson RC, Armstrong KM, Young W, Maclean P, Thomas DG, Bermingham EN.

Vet J. 2018 Apr;234:7-10. doi: 10.1016/j.tvjl.2018.01.005. Epub 2018 Feb 7.


Distribution of fatty acids and phospholipids in different table cuts and co-products from New Zealand pasture-fed Wagyu-dairy cross beef cattle.

Bermingham EN, Reis MG, Subbaraj AK, Cameron-Smith D, Fraser K, Jonker A, Craigie CR.

Meat Sci. 2018 Jun;140:26-37. doi: 10.1016/j.meatsci.2018.02.012. Epub 2018 Feb 20.


Comparative Genomics Reveals Accelerated Evolution in Conserved Pathways during the Diversification of Anole Lizards.

Tollis M, Hutchins ED, Stapley J, Rupp SM, Eckalbar WL, Maayan I, Lasku E, Infante CR, Dennis SR, Robertson JA, May CM, Crusoe MR, Bermingham E, DeNardo DF, Hsieh ST, Kulathinal RJ, McMillan WO, Menke DB, Pratt SC, Rawls JA, Sanjur O, Wilson-Rawls J, Wilson Sayres MA, Fisher RE, Kusumi K.

Genome Biol Evol. 2018 Feb 1;10(2):489-506. doi: 10.1093/gbe/evy013.


Macronutrient intake of dogs, self-selecting diets varying in composition offered ad libitum.

Roberts MT, Bermingham EN, Cave NJ, Young W, McKenzie CM, Thomas DG.

J Anim Physiol Anim Nutr (Berl). 2018 Apr;102(2):568-575. doi: 10.1111/jpn.12794. Epub 2017 Oct 12.


Key bacterial families (Clostridiaceae, Erysipelotrichaceae and Bacteroidaceae) are related to the digestion of protein and energy in dogs.

Bermingham EN, Maclean P, Thomas DG, Cave NJ, Young W.

PeerJ. 2017 Mar 2;5:e3019. doi: 10.7717/peerj.3019. eCollection 2017.


Corrigendum: Pre- and post-weaning diet alters the faecal metagenome in the cat with differences in vitamin and carbohydrate metabolism gene abundances.

Young W, Moon CD, Thomas DG, Cave NJ, Bermingham EN.

Sci Rep. 2017 Jan 24;7:41198. doi: 10.1038/srep41198. No abstract available.


Pre- and post-weaning diet alters the faecal metagenome in the cat with differences in vitamin and carbohydrate metabolism gene abundances.

Young W, Moon CD, Thomas DG, Cave NJ, Bermingham EN.

Sci Rep. 2016 Nov 23;6:34668. doi: 10.1038/srep34668. Erratum in: Sci Rep. 2017 Jan 24;7:41198.


Drift-driven evolution of electric signals in a Neotropical knifefish.

Picq S, Alda F, Bermingham E, Krahe R.

Evolution. 2016 Sep;70(9):2134-44. doi: 10.1111/evo.13010. Epub 2016 Aug 8.


Molecular Ecological Insights into Neotropical Bird-Tick Interactions.

Miller MJ, Esser HJ, Loaiza JR, Herre EA, Aguilar C, Quintero D, Alvarez E, Bermingham E.

PLoS One. 2016 May 20;11(5):e0155989. doi: 10.1371/journal.pone.0155989. eCollection 2016.


Molecular Phylogeny and Biogeography of the Amphidromous Fish Genus Dormitator Gill 1861 (Teleostei: Eleotridae).

Galván-Quesada S, Doadrio I, Alda F, Perdices A, Reina RG, García Varela M, Hernández N, Campos Mendoza A, Bermingham E, Domínguez-Domínguez O.

PLoS One. 2016 Apr 13;11(4):e0153538. doi: 10.1371/journal.pone.0153538. eCollection 2016.


Effect of Dietary Complex Lipids on the Biosynthesis of Piglet Brain Gangliosides.

Reis MM, Bermingham EN, Reis MG, Deb-Choudhury S, MacGibbon A, Fong B, McJarrow P, Bibiloni R, Bassett SA, Roy NC.

J Agric Food Chem. 2016 Feb 17;64(6):1245-55. doi: 10.1021/acs.jafc.5b05211. Epub 2016 Feb 5.


Contrasting demographic history and gene flow patterns of two mangrove species on either side of the Central American Isthmus.

Cerón-Souza I, Gonzalez EG, Schwarzbach AE, Salas-Leiva DE, Rivera-Ocasio E, Toro-Perea N, Bermingham E, McMillan WO.

Ecol Evol. 2015 Aug;5(16):3486-99. doi: 10.1002/ece3.1569. Epub 2015 Jul 28.


Low folate and selenium in the mouse maternal diet alters liver gene expression patterns in the offspring after weaning.

Barnett MP, Bermingham EN, Young W, Bassett SA, Hesketh JE, Maciel-Dominguez A, McNabb WC, Roy NC.

Nutrients. 2015 May 8;7(5):3370-86. doi: 10.3390/nu7053370.


Phylogenetic analyses provide insights into the historical biogeography and evolution of Brachyrhaphis fishes.

Ingley SJ, Reina RG, Bermingham E, Johnson JB.

Mol Phylogenet Evol. 2015 Aug;89:104-14. doi: 10.1016/j.ympev.2015.04.013. Epub 2015 Apr 24.


Assessing species boundaries using multilocus species delimitation in a morphologically conserved group of neotropical freshwater fishes, the Poecilia sphenops species complex (Poeciliidae).

Bagley JC, Alda F, Breitman MF, Bermingham E, van den Berghe EP, Johnson JB.

PLoS One. 2015 Apr 7;10(4):e0121139. doi: 10.1371/journal.pone.0121139. eCollection 2015.


Genetic and phenotypic characterization of a hybrid zone between polyandrous Northern and Wattled Jacanas in Western Panama.

Miller MJ, Lipshutz SE, Smith NG, Bermingham E.

BMC Evol Biol. 2014 Nov 15;14:227. doi: 10.1186/s12862-014-0227-7.


Faecal microbiota of forage-fed horses in New Zealand and the population dynamics of microbial communities following dietary change.

Fernandes KA, Kittelmann S, Rogers CW, Gee EK, Bolwell CF, Bermingham EN, Thomas DG.

PLoS One. 2014 Nov 10;9(11):e112846. doi: 10.1371/journal.pone.0112846. eCollection 2014.


Energy requirements of adult dogs: a meta-analysis.

Bermingham EN, Thomas DG, Cave NJ, Morris PJ, Butterwick RF, German AJ.

PLoS One. 2014 Oct 14;9(10):e109681. doi: 10.1371/journal.pone.0109681. eCollection 2014.


Selenium-enriched foods are more effective at increasing glutathione peroxidase (GPx) activity compared with selenomethionine: a meta-analysis.

Bermingham EN, Hesketh JE, Sinclair BR, Koolaard JP, Roy NC.

Nutrients. 2014 Sep 29;6(10):4002-31. doi: 10.3390/nu6104002.


Genomic atolls of differentiation in coral reef fishes (Hypoplectrus spp., Serranidae).

Puebla O, Bermingham E, McMillan WO.

Mol Ecol. 2014 Nov;23(21):5291-303. doi: 10.1111/mec.12926. Epub 2014 Oct 4.


Phylogeography of Heliconius cydno and its closest relatives: disentangling their origin and diversification.

Arias CF, Salazar C, Rosales C, Kronforst MR, Linares M, Bermingham E, McMillan WO.

Mol Ecol. 2014 Aug;23(16):4137-52. doi: 10.1111/mec.12844. Epub 2014 Jul 22.


The use of the noninferiority analysis in clinical studies.

Bermingham EC, del Castillo JR, Radecki SV.

Equine Vet J. 2014 Jul;46(4):399-401. doi: 10.1111/evj.12268. No abstract available.


Post-weaning diet affects faecal microbial composition but not selected adipose gene expression in the cat (Felis catus).

Bermingham EN, Kittelmann S, Young W, Kerr KR, Swanson KS, Roy NC, Thomas DG.

PLoS One. 2013 Nov 28;8(11):e80992. doi: 10.1371/journal.pone.0080992. eCollection 2013.


High-fidelity national carbon mapping for resource management and REDD+.

Asner GP, Mascaro J, Anderson C, Knapp DE, Martin RE, Kennedy-Bowdoin T, van Breugel M, Davies S, Hall JS, Muller-Landau HC, Potvin C, Sousa W, Wright J, Bermingham E.

Carbon Balance Manag. 2013 Jul 16;8(1):7. doi: 10.1186/1750-0680-8-7.


Novel genetic diversity within Anopheles punctimacula s.l.: phylogenetic discrepancy between the Barcode cytochrome c oxidase I (COI) gene and the rDNA second internal transcribed spacer (ITS2).

Loaiza JR, Scott ME, Bermingham E, Sanjur OI, Rovira JR, Dutari LC, Linton YM, Bickersmith S, Conn JE.

Acta Trop. 2013 Oct;128(1):61-9. doi: 10.1016/j.actatropica.2013.06.012. Epub 2013 Jun 24.


Post-weaning selenium and folate supplementation affects gene and protein expression and global DNA methylation in mice fed high-fat diets.

Bermingham EN, Bassett SA, Young W, Roy NC, McNabb WC, Cooney JM, Brewster DT, Laing WA, Barnett MP.

BMC Med Genomics. 2013 Mar 5;6:7. doi: 10.1186/1755-8794-6-7.


Neogene origins and implied warmth tolerance of Amazon tree species.

Dick CW, Lewis SL, Maslin M, Bermingham E.

Ecol Evol. 2012 Jan;3(1):162-9. doi: 10.1002/ece3.441. Epub 2012 Dec 14.


Impact of dietary dairy polar lipids on lipid metabolism of mice fed a high-fat diet.

Reis MG, Roy NC, Bermingham EN, Ryan L, Bibiloni R, Young W, Krause L, Berger B, North M, Stelwagen K, Reis MM.

J Agric Food Chem. 2013 Mar 20;61(11):2729-38. doi: 10.1021/jf303795b. Epub 2013 Mar 5.


Dietary format alters fecal bacterial populations in the domestic cat (Felis catus).

Bermingham EN, Young W, Kittelmann S, Kerr KR, Swanson KS, Roy NC, Thomas DG.

Microbiologyopen. 2013 Feb;2(1):173-81. doi: 10.1002/mbo3.60. Epub 2013 Jan 7.


DNA barcoding applied to ex situ tropical amphibian conservation programme reveals cryptic diversity in captive populations.

Crawford AJ, Cruz C, Griffith E, Ross H, Ibáñez R, Lips KR, Driskell AC, Bermingham E, Crump P.

Mol Ecol Resour. 2013 Nov;13(6):1005-18. doi: 10.1111/1755-0998.12054. Epub 2012 Dec 27.


Phylogeny and biogeography of the Poecilia sphenops species complex (Actinopterygii, Poeciliidae) in Central America.

Alda F, Reina RG, Doadrio I, Bermingham E.

Mol Phylogenet Evol. 2013 Mar;66(3):1011-26. doi: 10.1016/j.ympev.2012.12.012. Epub 2012 Dec 28.


Amblyomma tapirellum  (Acari: Ixodidae) collected from tropical forest canopy.

Loaiza JR, Miller MJ, Bermingham E, Sanjur OI, Jansen PA, Rovira JR, Alvarez E, Rodriguez E, Davis P, Dutari LC, Pecor J, Foley D, Radtke M, Pongsiri MJ.

Version 2. F1000Res. 2013 Sep 23 [revised 2014 Jan 1];2:194. doi: 10.12688/f1000research.2-194.v2. eCollection 2013.


Comparative genetic structure of two mangrove species in Caribbean and Pacific estuaries of Panama.

Cerón-Souza I, Bermingham E, McMillan WO, Jones FA.

BMC Evol Biol. 2012 Oct 18;12:205. doi: 10.1186/1471-2148-12-205.


Phylogenetic relationships and biogeography of Pseudoxiphophorus (Teleostei: Poeciliidae) based on mitochondrial and nuclear genes.

Agorreta A, Domínguez-Domínguez O, Reina RG, Miranda R, Bermingham E, Doadrio I.

Mol Phylogenet Evol. 2013 Jan;66(1):80-90. doi: 10.1016/j.ympev.2012.09.010. Epub 2012 Sep 27.


Phylogeographic Diversity of the Lower Central American Cichlid Andinoacara coeruleopunctatus (Cichlidae).

McCafferty SS, Martin A, Bermingham E.

Int J Evol Biol. 2012;2012:780169. Epub 2012 Sep 12.


On the spatial scale of dispersal in coral reef fishes.

Puebla O, Bermingham E, McMillan WO.

Mol Ecol. 2012 Dec;21(23):5675-88. doi: 10.1111/j.1365-294X.2012.05734.x. Epub 2012 Sep 20.


Sharp genetic discontinuity across a unimodal Heliconius hybrid zone.

Arias CF, Rosales C, Salazar C, Castaño J, Bermingham E, Linares M, McMillan WO.

Mol Ecol. 2012 Dec;21(23):5778-94. doi: 10.1111/j.1365-294X.2012.05746.x. Epub 2012 Sep 13.


Demographic history and genetic diversity in West Indian Coereba flaveola populations.

Bellemain E, Gaggiotti OE, Fahey A, Bermingham E, Ricklefs RE.

Genetica. 2012 Jun;140(4-6):137-48. Epub 2012 Aug 2.


Fluorescence correlation spectroscopy in drug discovery: study of Alexa532-endothelin 1 binding to the endothelin ETA receptor to describe the pharmacological profile of natural products.

Caballero-George C, Sorkalla T, Jakobs D, Bolaños J, Raja H, Shearer C, Bermingham E, Häberlein H.

ScientificWorldJournal. 2012;2012:524169. doi: 10.1100/2012/524169. Epub 2012 May 1.


Seasonal and age effects on energy requirements in domestic short-hair cats (Felis catus) in a temperate environment.

Bermingham EN, Weidgraaf K, Hekman M, Roy NC, Tavendale MH, Thomas DG.

J Anim Physiol Anim Nutr (Berl). 2013 Jun;97(3):522-30. doi: 10.1111/j.1439-0396.2012.01293.x. Epub 2012 Apr 25.


Hybridization and barriers to gene flow in an island bird radiation.

Warren BH, Bermingham E, Bourgeois Y, Estep LK, Prys-Jones RP, Strasberg D, Thébaud C.

Evolution. 2012 May;66(5):1490-505. doi: 10.1111/j.1558-5646.2011.01550.x. Epub 2012 Feb 9.


Considerations for extrapolating in vivo bioequivalence data across species and routes.

Modric S, Bermingham E, Heit M, Lainesse C, Thompson C.

J Vet Pharmacol Ther. 2012 Apr;35 Suppl 1:45-52. doi: 10.1111/j.1365-2885.2012.01365.x.


Demonstrating bioequivalence using clinical endpoint studies.

Bermingham E, Del Castillo JR, Lainesse C, Pasloske K, Radecki S.

J Vet Pharmacol Ther. 2012 Apr;35 Suppl 1:31-7. doi: 10.1111/j.1365-2885.2012.01366.x.


The Great American Biotic Interchange in frogs: multiple and early colonization of Central America by the South American genus Pristimantis (Anura: Craugastoridae).

Pinto-Sánchez NR, Ibáñez R, Madriñán S, Sanjur OI, Bermingham E, Crawford AJ.

Mol Phylogenet Evol. 2012 Mar;62(3):954-72. doi: 10.1016/j.ympev.2011.11.022. Epub 2011 Dec 8.


Five-week dietary exposure to dry diets alters the faecal bacterial populations in the domestic cat (Felis catus).

Bermingham EN, Kittelmann S, Henderson G, Young W, Roy NC, Thomas DG.

Br J Nutr. 2011 Oct;106 Suppl 1:S49-52. doi: 10.1017/S0007114511000572.


The roots of diversity: below ground species richness and rooting distributions in a tropical forest revealed by DNA barcodes and inverse modeling.

Jones FA, Erickson DL, Bernal MA, Bermingham E, Kress WJ, Herre EA, Muller-Landau HC, Turner BL.

PLoS One. 2011;6(9):e24506. doi: 10.1371/journal.pone.0024506. Epub 2011 Sep 19.

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