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Items: 1 to 50 of 519

1.

Client or Volunteer? Understanding Neoliberalism and Neocolonialism Within International Volunteer Health Work.

St-Amant O, Ward-Griffin C, Berman H, Vainio-Mattila A.

Glob Qual Nurs Res. 2018 Aug 21;5:2333393618792956. doi: 10.1177/2333393618792956. eCollection 2018 Jan-Dec.

2.

Mammary molecular portraits reveal lineage-specific features and progenitor cell vulnerabilities.

Casey AE, Sinha A, Singhania R, Livingstone J, Waterhouse P, Tharmapalan P, Cruickshank J, Shehata M, Drysdale E, Fang H, Kim H, Isserlin R, Bailey S, Medina T, Deblois G, Shiah YJ, Barsyte-Lovejoy D, Hofer S, Bader G, Lupien M, Arrowsmith C, Knapp S, De Carvalho D, Berman H, Boutros PC, Kislinger T, Khokha R.

J Cell Biol. 2018 Aug 6;217(8):2951-2974. doi: 10.1083/jcb.201804042. Epub 2018 Jun 19.

3.

Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data.

Young JY, Westbrook JD, Feng Z, Peisach E, Persikova I, Sala R, Sen S, Berrisford JM, Swaminathan GJ, Oldfield TJ, Gutmanas A, Igarashi R, Armstrong DR, Baskaran K, Chen L, Chen M, Clark AR, Di Costanzo L, Dimitropoulos D, Gao G, Ghosh S, Gore S, Guranovic V, Hendrickx PMS, Hudson BP, Ikegawa Y, Kengaku Y, Lawson CL, Liang Y, Mak L, Mukhopadhyay A, Narayanan B, Nishiyama K, Patwardhan A, Sahni G, Sanz-García E, Sato J, Sekharan MR, Shao C, Smart OS, Tan L, van Ginkel G, Yang H, Zhuravleva MA, Markley JL, Nakamura H, Kurisu G, Kleywegt GJ, Velankar S, Berman HM, Burley SK.

Database (Oxford). 2018 Jan 1;2018. doi: 10.1093/database/bay002.

4.

Development of a Prototype System for Archiving Integrative/Hybrid Structure Models of Biological Macromolecules.

Vallat B, Webb B, Westbrook JD, Sali A, Berman HM.

Structure. 2018 Jun 5;26(6):894-904.e2. doi: 10.1016/j.str.2018.03.011. Epub 2018 Apr 12.

PMID:
29657133
5.

The origins of breast cancer associated with mammographic density: a testable biological hypothesis.

Boyd N, Berman H, Zhu J, Martin LJ, Yaffe MJ, Chavez S, Stanisz G, Hislop G, Chiarelli AM, Minkin S, Paterson AD.

Breast Cancer Res. 2018 Mar 7;20(1):17. doi: 10.1186/s13058-018-0941-y.

6.

Impact of multi-gene mutational profiling on clinical trial outcomes in metastatic breast cancer.

Pezo RC, Chen TW, Berman HK, Mulligan AM, Razak AA, Siu LL, Cescon DW, Amir E, Elser C, Warr DG, Sridhar SS, Yu C, Wang L, Stockley TL, Kamel-Reid S, Bedard PL.

Breast Cancer Res Treat. 2018 Feb;168(1):159-168. doi: 10.1007/s10549-017-4580-2. Epub 2017 Nov 24.

7.

Validation of Structures in the Protein Data Bank.

Gore S, Sanz García E, Hendrickx PMS, Gutmanas A, Westbrook JD, Yang H, Feng Z, Baskaran K, Berrisford JM, Hudson BP, Ikegawa Y, Kobayashi N, Lawson CL, Mading S, Mak L, Mukhopadhyay A, Oldfield TJ, Patwardhan A, Peisach E, Sahni G, Sekharan MR, Sen S, Shao C, Smart OS, Ulrich EL, Yamashita R, Quesada M, Young JY, Nakamura H, Markley JL, Berman HM, Burley SK, Velankar S, Kleywegt GJ.

Structure. 2017 Dec 5;25(12):1916-1927. doi: 10.1016/j.str.2017.10.009. Epub 2017 Nov 22.

8.

Neurobiological Mechanisms of Chemotherapy-induced Cognitive Impairment in a Transgenic Model of Breast Cancer.

Winocur G, Berman H, Nguyen M, Binns MA, Henkelman M, van Eede M, Piquette-Miller M, Sekeres MJ, Wojtowicz JM, Yu J, Zhang H, Tannock IF.

Neuroscience. 2018 Jan 15;369:51-65. doi: 10.1016/j.neuroscience.2017.10.048. Epub 2017 Nov 4.

PMID:
29113931
9.

RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education.

Burley SK, Berman HM, Christie C, Duarte JM, Feng Z, Westbrook J, Young J, Zardecki C.

Protein Sci. 2018 Jan;27(1):316-330. doi: 10.1002/pro.3331. Epub 2017 Nov 11. Review.

10.

PDB-Dev: a Prototype System for Depositing Integrative/Hybrid Structural Models.

Burley SK, Kurisu G, Markley JL, Nakamura H, Velankar S, Berman HM, Sali A, Schwede T, Trewhella J.

Structure. 2017 Sep 5;25(9):1317-1318. doi: 10.1016/j.str.2017.08.001.

11.

Ontario's Poverty Reduction Strategy: A Critical Discourse Analysis.

Benbow S, Gorlick C, Forchuk C, Ward-Griffin C, Berman H.

Can J Nurs Res. 2016 Sep-Dec;48(3-4):100-109. doi: 10.1177/0844562116684729.

PMID:
28841075
12.

Correction: Salivary inflammatory markers and microbiome in normoglycemic lean and obese children compared to obese children with type 2 diabetes.

Janem WF, Scannapieco FA, Sabharwal A, Tsompana M, Berman HA, Haase EM, Miecznikowski JC, Mastrandrea LD.

PLoS One. 2017 Aug 16;12(8):e0183600. doi: 10.1371/journal.pone.0183600. eCollection 2017.

13.

Notch Shapes the Innate Immunophenotype in Breast Cancer.

Shen Q, Cohen B, Zheng W, Rahbar R, Martin B, Murakami K, Lamorte S, Thompson P, Berman H, Zúñiga-Pflücker JC, Ohashi PS, Reedijk M.

Cancer Discov. 2017 Nov;7(11):1320-1335. doi: 10.1158/2159-8290.CD-17-0037. Epub 2017 Aug 8.

PMID:
28790030
14.

The effects of next-day class characteristics on alcohol demand in college students.

Berman HL, Martinetti MP.

Psychol Addict Behav. 2017 Jun;31(4):488-496. doi: 10.1037/adb0000275.

PMID:
28604045
15.

Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive.

Burley SK, Berman HM, Kleywegt GJ, Markley JL, Nakamura H, Velankar S.

Methods Mol Biol. 2017;1607:627-641. doi: 10.1007/978-1-4939-7000-1_26. Review.

16.

In Reply to Manion and Khan.

Bharel M, Antman K, Berman H, Dimitri D, Flier J, Flotte T.

Acad Med. 2017 Jun;92(6):725-726. doi: 10.1097/ACM.0000000000001713. No abstract available.

PMID:
28557909
17.

DNAproDB: an interactive tool for structural analysis of DNA-protein complexes.

Sagendorf JM, Berman HM, Rohs R.

Nucleic Acids Res. 2017 Jul 3;45(W1):W89-W97. doi: 10.1093/nar/gkx272.

18.

Salivary inflammatory markers and microbiome in normoglycemic lean and obese children compared to obese children with type 2 diabetes.

Janem WF, Scannapieco FA, Sabharwal A, Tsompana M, Berman HA, Haase EM, Miecznikowski JC, Mastrandrea LD.

PLoS One. 2017 Mar 2;12(3):e0172647. doi: 10.1371/journal.pone.0172647. eCollection 2017. Erratum in: PLoS One. 2017 Aug 16;12 (8):e0183600.

19.

OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive.

Young JY, Westbrook JD, Feng Z, Sala R, Peisach E, Oldfield TJ, Sen S, Gutmanas A, Armstrong DR, Berrisford JM, Chen L, Chen M, Di Costanzo L, Dimitropoulos D, Gao G, Ghosh S, Gore S, Guranovic V, Hendrickx PMS, Hudson BP, Igarashi R, Ikegawa Y, Kobayashi N, Lawson CL, Liang Y, Mading S, Mak L, Mir MS, Mukhopadhyay A, Patwardhan A, Persikova I, Rinaldi L, Sanz-Garcia E, Sekharan MR, Shao C, Swaminathan GJ, Tan L, Ulrich EL, van Ginkel G, Yamashita R, Yang H, Zhuravleva MA, Quesada M, Kleywegt GJ, Berman HM, Markley JL, Nakamura H, Velankar S, Burley SK.

Structure. 2017 Mar 7;25(3):536-545. doi: 10.1016/j.str.2017.01.004. Epub 2017 Feb 9.

20.

A distinct innate lymphoid cell population regulates tumor-associated T cells.

Crome SQ, Nguyen LT, Lopez-Verges S, Yang SY, Martin B, Yam JY, Johnson DJ, Nie J, Pniak M, Yen PH, Milea A, Sowamber R, Katz SR, Bernardini MQ, Clarke BA, Shaw PA, Lang PA, Berman HK, Pugh TJ, Lanier LL, Ohashi PS.

Nat Med. 2017 Mar;23(3):368-375. doi: 10.1038/nm.4278. Epub 2017 Feb 6.

21.

Comfort Care Request for Preterm Infant: Prescriptive Analysis.

Berman H, Koch PM, Freer JP, Craenen G.

Am J Bioeth. 2017 Jan;17(1):84-86. No abstract available.

PMID:
27996913
22.

The RCSB protein data bank: integrative view of protein, gene and 3D structural information.

Rose PW, Prlić A, Altunkaya A, Bi C, Bradley AR, Christie CH, Costanzo LD, Duarte JM, Dutta S, Feng Z, Green RK, Goodsell DS, Hudson B, Kalro T, Lowe R, Peisach E, Randle C, Rose AS, Shao C, Tao YP, Valasatava Y, Voigt M, Westbrook JD, Woo J, Yang H, Young JY, Zardecki C, Berman HM, Burley SK.

Nucleic Acids Res. 2017 Jan 4;45(D1):D271-D281. doi: 10.1093/nar/gkw1000. Epub 2016 Oct 27.

23.

Molecular profiling of advanced solid tumors and patient outcomes with genotype-matched clinical trials: the Princess Margaret IMPACT/COMPACT trial.

Stockley TL, Oza AM, Berman HK, Leighl NB, Knox JJ, Shepherd FA, Chen EX, Krzyzanowska MK, Dhani N, Joshua AM, Tsao MS, Serra S, Clarke B, Roehrl MH, Zhang T, Sukhai MA, Califaretti N, Trinkaus M, Shaw P, van der Kwast T, Wang L, Virtanen C, Kim RH, Razak AR, Hansen AR, Yu C, Pugh TJ, Kamel-Reid S, Siu LL, Bedard PL.

Genome Med. 2016 Oct 25;8(1):109.

24.

How is the ultrasound in rheumatology used, implemented, and applied in Latin American centers? Results from a multicenter study.

Gutierrez M, Hernandez-Diaz C, Ventura-Rios L, Saldarriaga-Rivera LM, Ruta S, Alva M, -Trujillo CM, Pérez W, Terrazas H, Del Carmen Arape Toyo R, Quintero M, Solano C, Santiago OS, Sotomayor JG, Cefferino C, Py GE, Audisio MJ, Spindler WJ, Berman H, Airoldi C, Wong R, Del Castillo Araujo AL, Díaz ME, Villaquiran CC, Mantilla RD, Mendonça JA, da Silveira IG, do Prado AD, Bisi MC, Rosario V, Medrano-Sánchez J, Muñoz-Louis R, Lozada-Navarro AC, Bernal A, Lozano M, Pineda C; Pan-American League Against Rheumatisms (PANLAR) Ultrasound Study Group.

Clin Rheumatol. 2016 Dec;35(12):2893-2900. Epub 2016 Aug 30.

PMID:
27576331
25.

Developing Core Competencies for the Prevention and Management of Prescription Drug Misuse: A Medical Education Collaboration in Massachusetts.

Antman KH, Berman HA, Flotte TR, Flier J, Dimitri DM, Bharel M.

Acad Med. 2016 Oct;91(10):1348-1351.

PMID:
27532868
26.

The archiving and dissemination of biological structure data.

Berman HM, Burley SK, Kleywegt GJ, Markley JL, Nakamura H, Velankar S.

Curr Opin Struct Biol. 2016 Oct;40:17-22. doi: 10.1016/j.sbi.2016.06.018. Epub 2016 Jul 21. Review.

27.

DCC: a Swiss army knife for structure factor analysis and validation.

Yang H, Peisach E, Westbrook JD, Young J, Berman HM, Burley SK.

J Appl Crystallogr. 2016 Apr 18;49(Pt 3):1081-1084. eCollection 2016 Jun 1.

28.

RANKL/RANK control Brca1 mutation- .

Sigl V, Owusu-Boaitey K, Joshi PA, Kavirayani A, Wirnsberger G, Novatchkova M, Kozieradzki I, Schramek D, Edokobi N, Hersl J, Sampson A, Odai-Afotey A, Lazaro C, Gonzalez-Suarez E, Pujana MA, Cimba F, Heyn H, Vidal E, Cruickshank J, Berman H, Sarao R, Ticevic M, Uribesalgo I, Tortola L, Rao S, Tan Y, Pfeiler G, Lee EY, Bago-Horvath Z, Kenner L, Popper H, Singer C, Khokha R, Jones LP, Penninger JM.

Cell Res. 2016 Jul;26(7):761-74. doi: 10.1038/cr.2016.69. Epub 2016 May 31.

29.

Bridging the Academia/Industry Chasm: Proposed Solutions.

Beninger P, Boumil M, Salem D, Getz K, Klapholz H, Curfman GD, Jotwani R, Berman H.

J Clin Pharmacol. 2016 Dec;56(12):1457-1460. doi: 10.1002/jcph.762. Epub 2016 Jun 7. No abstract available.

PMID:
27149908
30.

Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop.

Adams PD, Aertgeerts K, Bauer C, Bell JA, Berman HM, Bhat TN, Blaney JM, Bolton E, Bricogne G, Brown D, Burley SK, Case DA, Clark KL, Darden T, Emsley P, Feher VA, Feng Z, Groom CR, Harris SF, Hendle J, Holder T, Joachimiak A, Kleywegt GJ, Krojer T, Marcotrigiano J, Mark AE, Markley JL, Miller M, Minor W, Montelione GT, Murshudov G, Nakagawa A, Nakamura H, Nicholls A, Nicklaus M, Nolte RT, Padyana AK, Peishoff CE, Pieniazek S, Read RJ, Shao C, Sheriff S, Smart O, Soisson S, Spurlino J, Stouch T, Svobodova R, Tempel W, Terwilliger TC, Tronrud D, Velankar S, Ward SC, Warren GL, Westbrook JD, Williams P, Yang H, Young J.

Structure. 2016 Apr 5;24(4):502-508. doi: 10.1016/j.str.2016.02.017.

31.

Extracellular Tau Oligomers Produce An Immediate Impairment of LTP and Memory.

Fá M, Puzzo D, Piacentini R, Staniszewski A, Zhang H, Baltrons MA, Li Puma DD, Chatterjee I, Li J, Saeed F, Berman HL, Ripoli C, Gulisano W, Gonzalez J, Tian H, Costa JA, Lopez P, Davidowitz E, Yu WH, Haroutunian V, Brown LM, Palmeri A, Sigurdsson EM, Duff KE, Teich AF, Honig LS, Sierks M, Moe JG, D'Adamio L, Grassi C, Kanaan NM, Fraser PE, Arancio O.

Sci Rep. 2016 Jan 20;6:19393. doi: 10.1038/srep19393.

32.

EMDataBank unified data resource for 3DEM.

Lawson CL, Patwardhan A, Baker ML, Hryc C, Garcia ES, Hudson BP, Lagerstedt I, Ludtke SJ, Pintilie G, Sala R, Westbrook JD, Berman HM, Kleywegt GJ, Chiu W.

Nucleic Acids Res. 2016 Jan 4;44(D1):D396-403. doi: 10.1093/nar/gkv1126. Epub 2015 Nov 17.

33.

Social Exclusion and Health: The Development of Nursing Knowledge.

Benbow S, Forchuk C, Gorlick C, Berman H, Ward-Griffin C.

Can J Nurs Res. 2015 Sep;47(3):56-72. doi: 10.1177/084456211504700305. English, French.

PMID:
29509473
34.

Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop.

Sali A, Berman HM, Schwede T, Trewhella J, Kleywegt G, Burley SK, Markley J, Nakamura H, Adams P, Bonvin AM, Chiu W, Peraro MD, Di Maio F, Ferrin TE, Grünewald K, Gutmanas A, Henderson R, Hummer G, Iwasaki K, Johnson G, Lawson CL, Meiler J, Marti-Renom MA, Montelione GT, Nilges M, Nussinov R, Patwardhan A, Rappsilber J, Read RJ, Saibil H, Schröder GF, Schwieters CD, Seidel CA, Svergun D, Topf M, Ulrich EL, Velankar S, Westbrook JD.

Structure. 2015 Jul 7;23(7):1156-67. doi: 10.1016/j.str.2015.05.013. Epub 2015 Jun 18.

35.

NMR Exchange Format: a unified and open standard for representation of NMR restraint data.

Gutmanas A, Adams PD, Bardiaux B, Berman HM, Case DA, Fogh RH, Güntert P, Hendrickx PM, Herrmann T, Kleywegt GJ, Kobayashi N, Lange OF, Markley JL, Montelione GT, Nilges M, Ragan TJ, Schwieters CD, Tejero R, Ulrich EL, Velankar S, Vranken WF, Wedell JR, Westbrook J, Wishart DS, Vuister GW.

Nat Struct Mol Biol. 2015 Jun;22(6):433-4. doi: 10.1038/nsmb.3041. No abstract available.

36.

The RCSB PDB "Molecule of the Month": Inspiring a Molecular View of Biology.

Goodsell DS, Dutta S, Zardecki C, Voigt M, Berman HM, Burley SK.

PLoS Biol. 2015 May 5;13(5):e1002140. doi: 10.1371/journal.pbio.1002140. eCollection 2015 May.

37.

A Critical Discourse Analysis of Provincial Policies Impacting Shelter Service Delivery to Women Exposed to Violence.

Burnett C, Ford-Gilboe M, Berman H, Ward-Griffin C, Wathen N.

Policy Polit Nurs Pract. 2015 Feb-May;16(1-2):5-16. doi: 10.1177/1527154415583123. Epub 2015 Apr 23.

PMID:
25908665
38.

Expansion of stem cells counteracts age-related mammary regression in compound Timp1/Timp3 null mice.

Jackson HW, Waterhouse P, Sinha A, Kislinger T, Berman HK, Khokha R.

Nat Cell Biol. 2015 Mar;17(3):217-27. doi: 10.1038/ncb3118. Epub 2015 Feb 23.

PMID:
25706237
39.

Glutathione and thioredoxin antioxidant pathways synergize to drive cancer initiation and progression.

Harris IS, Treloar AE, Inoue S, Sasaki M, Gorrini C, Lee KC, Yung KY, Brenner D, Knobbe-Thomsen CB, Cox MA, Elia A, Berger T, Cescon DW, Adeoye A, Brüstle A, Molyneux SD, Mason JM, Li WY, Yamamoto K, Wakeham A, Berman HK, Khokha R, Done SJ, Kavanagh TJ, Lam CW, Mak TW.

Cancer Cell. 2015 Feb 9;27(2):211-22. doi: 10.1016/j.ccell.2014.11.019. Epub 2015 Jan 22. Erratum in: Cancer Cell. 2015 Feb 9;27(2):314.

40.

Data to knowledge: how to get meaning from your result.

Berman HM, Gabanyi MJ, Groom CR, Johnson JE, Murshudov GN, Nicholls RA, Reddy V, Schwede T, Zimmerman MD, Westbrook J, Minor W.

IUCrJ. 2015 Jan 1;2(Pt 1):45-58. doi: 10.1107/S2052252514023306. eCollection 2015 Jan 1. Review.

41.

B7-H4 expression by nonhematopoietic cells in the tumor microenvironment promotes antitumor immunity.

Rahbar R, Lin A, Ghazarian M, Yau HL, Paramathas S, Lang PA, Schildknecht A, Elford AR, Garcia-Batres C, Martin B, Berman HK, Leong WL, McCready DR, Reedijk M, Done SJ, Miller N, Youngson B, Suh WK, Mak TW, Ohashi PS.

Cancer Immunol Res. 2015 Feb;3(2):184-95. doi: 10.1158/2326-6066.CIR-14-0113. Epub 2014 Dec 19.

42.

Protein structure annotation resources.

Gabanyi MJ, Berman HM.

Methods Mol Biol. 2015;1261:3-20. doi: 10.1007/978-1-4939-2230-7_1. Review.

43.

The RCSB Protein Data Bank: views of structural biology for basic and applied research and education.

Rose PW, Prlić A, Bi C, Bluhm WF, Christie CH, Dutta S, Green RK, Goodsell DS, Westbrook JD, Woo J, Young J, Zardecki C, Berman HM, Bourne PE, Burley SK.

Nucleic Acids Res. 2015 Jan;43(Database issue):D345-56. doi: 10.1093/nar/gku1214. Epub 2014 Nov 26.

44.

Strengths amidst vulnerabilities: the paradox of resistance in a mining-affected community in Guatemala.

Caxaj CS, Berman H, Ray SL, Restoule JP, Varcoe C.

Issues Ment Health Nurs. 2014 Nov;35(11):824-34. doi: 10.3109/01612840.2014.919620.

PMID:
25353295
45.

Response to On prompt update of literature references in the Protein Data Bank.

Berman HM, Burley SK, Kleywegt GJ, Nakamura H, Markley JL.

Acta Crystallogr D Biol Crystallogr. 2014 Oct;70(Pt 10):2780. doi: 10.1107/S1399004714020513. Epub 2014 Sep 30.

46.

RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank.

Quinn GB, Bi C, Christie CH, Pang K, Prlić A, Nakane T, Zardecki C, Voigt M, Berman HM, Bourne PE, Rose PW.

Bioinformatics. 2015 Jan 1;31(1):126-7. doi: 10.1093/bioinformatics/btu596. Epub 2014 Sep 2.

47.

Human somatic cell mutagenesis creates genetically tractable sarcomas.

Molyneux SD, Waterhouse PD, Shelton D, Shao YW, Watling CM, Tang QL, Harris IS, Dickson BC, Tharmapalan P, Sandve GK, Zhang X, Bailey SD, Berman H, Wunder JS, Izsvák Z, Lupien M, Mak TW, Khokha R.

Nat Genet. 2014 Sep;46(9):964-72. doi: 10.1038/ng.3065. Epub 2014 Aug 17. Erratum in: Nat Genet. 2014 Dec;46(12):1372. Iszvak, Zsuzsanna [corrected to Izsvák, Zsuzsanna.

PMID:
25129143
48.

The Protein Data Bank archive as an open data resource.

Berman HM, Kleywegt GJ, Nakamura H, Markley JL.

J Comput Aided Mol Des. 2014 Oct;28(10):1009-14. doi: 10.1007/s10822-014-9770-y. Epub 2014 Jul 26.

49.

Distribution of superantigens in group A streptococcal isolates from Salvador, Brazil.

Berman HF, Tartof SY, Reis JN, Reis MG, Riley LW.

BMC Infect Dis. 2014 May 29;14:294. doi: 10.1186/1471-2334-14-294.

50.

Gold mining on Mayan-Mam territory: social unravelling, discord and distress in the Western highlands of Guatemala.

Caxaj CS, Berman H, Varcoe C, Ray SL, Restoulec JP.

Soc Sci Med. 2014 Jun;111:50-7. doi: 10.1016/j.socscimed.2014.03.036. Epub 2014 Apr 4.

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