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Items: 1 to 50 of 539

1.

DNAproDB: an expanded database and web-based tool for structural analysis of DNA-protein complexes.

Sagendorf JM, Markarian N, Berman HM, Rohs R.

Nucleic Acids Res. 2019 Oct 15. pii: gkz889. doi: 10.1093/nar/gkz889. [Epub ahead of print]

PMID:
31612957
2.

Understanding and Interpreting Community Sequencing Measurements of the Vaginal Microbiome.

Berman HL, McLaren MR, Callahan BJ.

BJOG. 2019 Oct 9. doi: 10.1111/1471-0528.15978. [Epub ahead of print] Review.

PMID:
31597208
3.

Cyberbullying Among Adolescents: Stakeholder-Driven Concept Mapping Approach.

Moreno MA, Midamba N, Berman HS, Moreno PS, Donlin M, Schlocker E.

JMIR Pediatr Parent. 2019 Jun 28;2(1):e12683. doi: 10.2196/12683.

4.

Guselkumab in the treatment of concomitant hidradenitis suppurativa, psoriasis, and Crohn's disease.

Berman HS, Villa NM, Shi VY, Hsiao JL.

J Dermatolog Treat. 2019 Aug 25:1-3. doi: 10.1080/09546634.2019.1654067. [Epub ahead of print]

PMID:
31389737
5.

Genomic Features of High-Priority Salmonella enterica Serovars Circulating in the Food Production Chain, Brazil, 2000-2016.

Monte DF, Lincopan N, Berman H, Cerdeira L, Keelara S, Thakur S, Fedorka-Cray PJ, Landgraf M.

Sci Rep. 2019 Jul 30;9(1):11058. doi: 10.1038/s41598-019-45838-0.

6.

Pediatric generalized lichen nitidus treated with natural sunlight therapy.

Berman H, Truong A, Cheng CE.

Pediatr Dermatol. 2019 Sep;36(5):690-692. doi: 10.1111/pde.13915. Epub 2019 Jul 17.

PMID:
31313355
7.

Spaces of Exclusion: Safety, Stigma, and Surveillance of Mothers Experiencing Homelessness.

Benbow S, Forchuk C, Berman H, Gorlick C, Ward-Griffin C.

Can J Nurs Res. 2019 Sep;51(3):202-213. doi: 10.1177/0844562119859138. Epub 2019 Jul 8. No abstract available.

PMID:
31282752
8.

Archiving and disseminating integrative structure models.

Vallat B, Webb B, Westbrook J, Sali A, Berman HM.

J Biomol NMR. 2019 Jul;73(6-7):385-398. doi: 10.1007/s10858-019-00264-2. Epub 2019 Jul 5.

9.

Mammary stem cells and progenitors: targeting the roots of breast cancer for prevention.

Tharmapalan P, Mahendralingam M, Berman HK, Khokha R.

EMBO J. 2019 Jul 15;38(14):e100852. doi: 10.15252/embj.2018100852. Epub 2019 Jun 21. Review.

10.

"Until You Hit Rock Bottom There's No Support": Contradictory Sources and Systems of Support for Mothers Experiencing Homelessness in Southwestern Ontario.

Benbow S, Forchuk C, Gorlick C, Berman H, Ward-Griffin C.

Can J Nurs Res. 2019 Sep;51(3):179-190. doi: 10.1177/0844562119840910. Epub 2019 May 2. No abstract available.

PMID:
31046440
11.

Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB).

Adams PD, Afonine PV, Baskaran K, Berman HM, Berrisford J, Bricogne G, Brown DG, Burley SK, Chen M, Feng Z, Flensburg C, Gutmanas A, Hoch JC, Ikegawa Y, Kengaku Y, Krissinel E, Kurisu G, Liang Y, Liebschner D, Mak L, Markley JL, Moriarty NW, Murshudov GN, Noble M, Peisach E, Persikova I, Poon BK, Sobolev OV, Ulrich EL, Velankar S, Vonrhein C, Westbrook J, Wojdyr M, Yokochi M, Young JY.

Acta Crystallogr D Struct Biol. 2019 Apr 1;75(Pt 4):451-454. doi: 10.1107/S2059798319004522. Epub 2019 Apr 8. No abstract available.

PMID:
30988261
12.

The Behavioral Economics of Alcohol Demand in French and American University Students.

Martinetti MP, Caughron RL, Berman HL, André J, Sokolowski MBC, Wiley S, Naassila M.

Alcohol Clin Exp Res. 2019 Mar;43(3):531-544. doi: 10.1111/acer.13954. Epub 2019 Feb 7.

PMID:
30730582
13.

Breast specimen handling and reporting in the post-neoadjuvant setting: challenges and advances.

Mrkonjic M, Berman HK, Done SJ, Youngson B, Mulligan AM.

J Clin Pathol. 2019 Feb;72(2):120-132. doi: 10.1136/jclinpath-2018-205598. Review.

PMID:
30670564
14.

Archiving of Integrative Structural Models.

Berman HM, Trewhella J, Vallat B, Westbrook JD.

Adv Exp Med Biol. 2018;1105:261-272. doi: 10.1007/978-981-13-2200-6_16. Review.

PMID:
30617834
15.

Exercise-linked FNDC5/irisin rescues synaptic plasticity and memory defects in Alzheimer's models.

Lourenco MV, Frozza RL, de Freitas GB, Zhang H, Kincheski GC, Ribeiro FC, Gonçalves RA, Clarke JR, Beckman D, Staniszewski A, Berman H, Guerra LA, Forny-Germano L, Meier S, Wilcock DM, de Souza JM, Alves-Leon S, Prado VF, Prado MAM, Abisambra JF, Tovar-Moll F, Mattos P, Arancio O, Ferreira ST, De Felice FG.

Nat Med. 2019 Jan;25(1):165-175. doi: 10.1038/s41591-018-0275-4. Epub 2019 Jan 7.

16.

Mothering Without a Home: Internalized Impacts of Social Exclusion.

Benbow S, Forchuk C, Berman H, Gorlick C, Ward-Griffin C.

Can J Nurs Res. 2019 Jun;51(2):105-115. doi: 10.1177/0844562118818948. Epub 2018 Dec 26.

PMID:
30587004
17.

RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy.

Burley SK, Berman HM, Bhikadiya C, Bi C, Chen L, Di Costanzo L, Christie C, Dalenberg K, Duarte JM, Dutta S, Feng Z, Ghosh S, Goodsell DS, Green RK, Guranovic V, Guzenko D, Hudson BP, Kalro T, Liang Y, Lowe R, Namkoong H, Peisach E, Periskova I, Prlic A, Randle C, Rose A, Rose P, Sala R, Sekharan M, Shao C, Tan L, Tao YP, Valasatava Y, Voigt M, Westbrook J, Woo J, Yang H, Young J, Zhuravleva M, Zardecki C.

Nucleic Acids Res. 2019 Jan 8;47(D1):D464-D474. doi: 10.1093/nar/gky1004.

18.

Frequency of human leukocyte antigens class II-DR alleles (HLA-DRB1) in Argentinian patients with early arthritis.

Citera G, Pra FD, Waimann CA, Ficco HM, Alvarellos T, Mas LA, Cerda OL, Paira S, Pellet AC, Secco A, Marino L, Martire M, Marcos J, García MA, Salas A, Berman A, Berman H, Rillo OL, Vargas L, Velozo E, Juarez RV, Espindola MEC.

Clin Rheumatol. 2019 Mar;38(3):675-681. doi: 10.1007/s10067-018-4319-4. Epub 2018 Oct 10.

PMID:
30306282
19.

Client or Volunteer? Understanding Neoliberalism and Neocolonialism Within International Volunteer Health Work.

St-Amant O, Ward-Griffin C, Berman H, Vainio-Mattila A.

Glob Qual Nurs Res. 2018 Aug 21;5:2333393618792956. doi: 10.1177/2333393618792956. eCollection 2018 Jan-Dec.

20.

Mammary molecular portraits reveal lineage-specific features and progenitor cell vulnerabilities.

Casey AE, Sinha A, Singhania R, Livingstone J, Waterhouse P, Tharmapalan P, Cruickshank J, Shehata M, Drysdale E, Fang H, Kim H, Isserlin R, Bailey S, Medina T, Deblois G, Shiah YJ, Barsyte-Lovejoy D, Hofer S, Bader G, Lupien M, Arrowsmith C, Knapp S, De Carvalho D, Berman H, Boutros PC, Kislinger T, Khokha R.

J Cell Biol. 2018 Aug 6;217(8):2951-2974. doi: 10.1083/jcb.201804042. Epub 2018 Jun 19.

21.

Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data.

Young JY, Westbrook JD, Feng Z, Peisach E, Persikova I, Sala R, Sen S, Berrisford JM, Swaminathan GJ, Oldfield TJ, Gutmanas A, Igarashi R, Armstrong DR, Baskaran K, Chen L, Chen M, Clark AR, Di Costanzo L, Dimitropoulos D, Gao G, Ghosh S, Gore S, Guranovic V, Hendrickx PMS, Hudson BP, Ikegawa Y, Kengaku Y, Lawson CL, Liang Y, Mak L, Mukhopadhyay A, Narayanan B, Nishiyama K, Patwardhan A, Sahni G, Sanz-García E, Sato J, Sekharan MR, Shao C, Smart OS, Tan L, van Ginkel G, Yang H, Zhuravleva MA, Markley JL, Nakamura H, Kurisu G, Kleywegt GJ, Velankar S, Berman HM, Burley SK.

Database (Oxford). 2018 Jan 1;2018. doi: 10.1093/database/bay002.

22.

Development of a Prototype System for Archiving Integrative/Hybrid Structure Models of Biological Macromolecules.

Vallat B, Webb B, Westbrook JD, Sali A, Berman HM.

Structure. 2018 Jun 5;26(6):894-904.e2. doi: 10.1016/j.str.2018.03.011. Epub 2018 Apr 12.

23.

The origins of breast cancer associated with mammographic density: a testable biological hypothesis.

Boyd N, Berman H, Zhu J, Martin LJ, Yaffe MJ, Chavez S, Stanisz G, Hislop G, Chiarelli AM, Minkin S, Paterson AD.

Breast Cancer Res. 2018 Mar 7;20(1):17. doi: 10.1186/s13058-018-0941-y.

24.

Anticipating innovations in structural biology.

Berman HM, Lawson CL, Vallat B, Gabanyi MJ.

Q Rev Biophys. 2018 Jan;51:e8. doi: 10.1017/S0033583518000057. Review.

25.

Impact of multi-gene mutational profiling on clinical trial outcomes in metastatic breast cancer.

Pezo RC, Chen TW, Berman HK, Mulligan AM, Razak AA, Siu LL, Cescon DW, Amir E, Elser C, Warr DG, Sridhar SS, Yu C, Wang L, Stockley TL, Kamel-Reid S, Bedard PL.

Breast Cancer Res Treat. 2018 Feb;168(1):159-168. doi: 10.1007/s10549-017-4580-2. Epub 2017 Nov 24.

26.

Validation of Structures in the Protein Data Bank.

Gore S, Sanz García E, Hendrickx PMS, Gutmanas A, Westbrook JD, Yang H, Feng Z, Baskaran K, Berrisford JM, Hudson BP, Ikegawa Y, Kobayashi N, Lawson CL, Mading S, Mak L, Mukhopadhyay A, Oldfield TJ, Patwardhan A, Peisach E, Sahni G, Sekharan MR, Sen S, Shao C, Smart OS, Ulrich EL, Yamashita R, Quesada M, Young JY, Nakamura H, Markley JL, Berman HM, Burley SK, Velankar S, Kleywegt GJ.

Structure. 2017 Dec 5;25(12):1916-1927. doi: 10.1016/j.str.2017.10.009. Epub 2017 Nov 22.

27.

Neurobiological Mechanisms of Chemotherapy-induced Cognitive Impairment in a Transgenic Model of Breast Cancer.

Winocur G, Berman H, Nguyen M, Binns MA, Henkelman M, van Eede M, Piquette-Miller M, Sekeres MJ, Wojtowicz JM, Yu J, Zhang H, Tannock IF.

Neuroscience. 2018 Jan 15;369:51-65. doi: 10.1016/j.neuroscience.2017.10.048. Epub 2017 Nov 4.

PMID:
29113931
28.

RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education.

Burley SK, Berman HM, Christie C, Duarte JM, Feng Z, Westbrook J, Young J, Zardecki C.

Protein Sci. 2018 Jan;27(1):316-330. doi: 10.1002/pro.3331. Epub 2017 Nov 11. Review.

29.

PDB-Dev: a Prototype System for Depositing Integrative/Hybrid Structural Models.

Burley SK, Kurisu G, Markley JL, Nakamura H, Velankar S, Berman HM, Sali A, Schwede T, Trewhella J.

Structure. 2017 Sep 5;25(9):1317-1318. doi: 10.1016/j.str.2017.08.001.

30.

Ontario's Poverty Reduction Strategy: A Critical Discourse Analysis.

Benbow S, Gorlick C, Forchuk C, Ward-Griffin C, Berman H.

Can J Nurs Res. 2016 Sep-Dec;48(3-4):100-109. doi: 10.1177/0844562116684729.

PMID:
28841075
31.

Correction: Salivary inflammatory markers and microbiome in normoglycemic lean and obese children compared to obese children with type 2 diabetes.

Janem WF, Scannapieco FA, Sabharwal A, Tsompana M, Berman HA, Haase EM, Miecznikowski JC, Mastrandrea LD.

PLoS One. 2017 Aug 16;12(8):e0183600. doi: 10.1371/journal.pone.0183600. eCollection 2017.

32.

Notch Shapes the Innate Immunophenotype in Breast Cancer.

Shen Q, Cohen B, Zheng W, Rahbar R, Martin B, Murakami K, Lamorte S, Thompson P, Berman H, Zúñiga-Pflücker JC, Ohashi PS, Reedijk M.

Cancer Discov. 2017 Nov;7(11):1320-1335. doi: 10.1158/2159-8290.CD-17-0037. Epub 2017 Aug 8.

33.

The effects of next-day class characteristics on alcohol demand in college students.

Berman HL, Martinetti MP.

Psychol Addict Behav. 2017 Jun;31(4):488-496. doi: 10.1037/adb0000275.

PMID:
28604045
34.

Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive.

Burley SK, Berman HM, Kleywegt GJ, Markley JL, Nakamura H, Velankar S.

Methods Mol Biol. 2017;1607:627-641. doi: 10.1007/978-1-4939-7000-1_26. Review.

35.

In Reply to Manion and Khan.

Bharel M, Antman K, Berman H, Dimitri D, Flier J, Flotte T.

Acad Med. 2017 Jun;92(6):725-726. doi: 10.1097/ACM.0000000000001713. No abstract available.

PMID:
28557909
36.

DNAproDB: an interactive tool for structural analysis of DNA-protein complexes.

Sagendorf JM, Berman HM, Rohs R.

Nucleic Acids Res. 2017 Jul 3;45(W1):W89-W97. doi: 10.1093/nar/gkx272.

37.

Salivary inflammatory markers and microbiome in normoglycemic lean and obese children compared to obese children with type 2 diabetes.

Janem WF, Scannapieco FA, Sabharwal A, Tsompana M, Berman HA, Haase EM, Miecznikowski JC, Mastrandrea LD.

PLoS One. 2017 Mar 2;12(3):e0172647. doi: 10.1371/journal.pone.0172647. eCollection 2017. Erratum in: PLoS One. 2017 Aug 16;12 (8):e0183600.

38.

OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive.

Young JY, Westbrook JD, Feng Z, Sala R, Peisach E, Oldfield TJ, Sen S, Gutmanas A, Armstrong DR, Berrisford JM, Chen L, Chen M, Di Costanzo L, Dimitropoulos D, Gao G, Ghosh S, Gore S, Guranovic V, Hendrickx PMS, Hudson BP, Igarashi R, Ikegawa Y, Kobayashi N, Lawson CL, Liang Y, Mading S, Mak L, Mir MS, Mukhopadhyay A, Patwardhan A, Persikova I, Rinaldi L, Sanz-Garcia E, Sekharan MR, Shao C, Swaminathan GJ, Tan L, Ulrich EL, van Ginkel G, Yamashita R, Yang H, Zhuravleva MA, Quesada M, Kleywegt GJ, Berman HM, Markley JL, Nakamura H, Velankar S, Burley SK.

Structure. 2017 Mar 7;25(3):536-545. doi: 10.1016/j.str.2017.01.004. Epub 2017 Feb 9.

39.

A distinct innate lymphoid cell population regulates tumor-associated T cells.

Crome SQ, Nguyen LT, Lopez-Verges S, Yang SY, Martin B, Yam JY, Johnson DJ, Nie J, Pniak M, Yen PH, Milea A, Sowamber R, Katz SR, Bernardini MQ, Clarke BA, Shaw PA, Lang PA, Berman HK, Pugh TJ, Lanier LL, Ohashi PS.

Nat Med. 2017 Mar;23(3):368-375. doi: 10.1038/nm.4278. Epub 2017 Feb 6.

40.

Comfort Care Request for Preterm Infant: Prescriptive Analysis.

Berman H, Koch PM, Freer JP, Craenen G.

Am J Bioeth. 2017 Jan;17(1):84-86. No abstract available.

PMID:
27996913
41.

The RCSB protein data bank: integrative view of protein, gene and 3D structural information.

Rose PW, Prlić A, Altunkaya A, Bi C, Bradley AR, Christie CH, Costanzo LD, Duarte JM, Dutta S, Feng Z, Green RK, Goodsell DS, Hudson B, Kalro T, Lowe R, Peisach E, Randle C, Rose AS, Shao C, Tao YP, Valasatava Y, Voigt M, Westbrook JD, Woo J, Yang H, Young JY, Zardecki C, Berman HM, Burley SK.

Nucleic Acids Res. 2017 Jan 4;45(D1):D271-D281. doi: 10.1093/nar/gkw1000. Epub 2016 Oct 27.

42.

Molecular profiling of advanced solid tumors and patient outcomes with genotype-matched clinical trials: the Princess Margaret IMPACT/COMPACT trial.

Stockley TL, Oza AM, Berman HK, Leighl NB, Knox JJ, Shepherd FA, Chen EX, Krzyzanowska MK, Dhani N, Joshua AM, Tsao MS, Serra S, Clarke B, Roehrl MH, Zhang T, Sukhai MA, Califaretti N, Trinkaus M, Shaw P, van der Kwast T, Wang L, Virtanen C, Kim RH, Razak AR, Hansen AR, Yu C, Pugh TJ, Kamel-Reid S, Siu LL, Bedard PL.

Genome Med. 2016 Oct 25;8(1):109.

43.

How is the ultrasound in rheumatology used, implemented, and applied in Latin American centers? Results from a multicenter study.

Gutierrez M, Hernandez-Diaz C, Ventura-Rios L, Saldarriaga-Rivera LM, Ruta S, Alva M, -Trujillo CM, Pérez W, Terrazas H, Del Carmen Arape Toyo R, Quintero M, Solano C, Santiago OS, Sotomayor JG, Cefferino C, Py GE, Audisio MJ, Spindler WJ, Berman H, Airoldi C, Wong R, Del Castillo Araujo AL, Díaz ME, Villaquiran CC, Mantilla RD, Mendonça JA, da Silveira IG, do Prado AD, Bisi MC, Rosario V, Medrano-Sánchez J, Muñoz-Louis R, Lozada-Navarro AC, Bernal A, Lozano M, Pineda C; Pan-American League Against Rheumatisms (PANLAR) Ultrasound Study Group.

Clin Rheumatol. 2016 Dec;35(12):2893-2900. Epub 2016 Aug 30.

PMID:
27576331
44.

Developing Core Competencies for the Prevention and Management of Prescription Drug Misuse: A Medical Education Collaboration in Massachusetts.

Antman KH, Berman HA, Flotte TR, Flier J, Dimitri DM, Bharel M.

Acad Med. 2016 Oct;91(10):1348-1351.

PMID:
27532868
45.

The archiving and dissemination of biological structure data.

Berman HM, Burley SK, Kleywegt GJ, Markley JL, Nakamura H, Velankar S.

Curr Opin Struct Biol. 2016 Oct;40:17-22. doi: 10.1016/j.sbi.2016.06.018. Epub 2016 Jul 21. Review.

46.

DCC: a Swiss army knife for structure factor analysis and validation.

Yang H, Peisach E, Westbrook JD, Young J, Berman HM, Burley SK.

J Appl Crystallogr. 2016 Apr 18;49(Pt 3):1081-1084. eCollection 2016 Jun 1.

47.

RANKL/RANK control Brca1 mutation- .

Sigl V, Owusu-Boaitey K, Joshi PA, Kavirayani A, Wirnsberger G, Novatchkova M, Kozieradzki I, Schramek D, Edokobi N, Hersl J, Sampson A, Odai-Afotey A, Lazaro C, Gonzalez-Suarez E, Pujana MA, Cimba F, Heyn H, Vidal E, Cruickshank J, Berman H, Sarao R, Ticevic M, Uribesalgo I, Tortola L, Rao S, Tan Y, Pfeiler G, Lee EY, Bago-Horvath Z, Kenner L, Popper H, Singer C, Khokha R, Jones LP, Penninger JM.

Cell Res. 2016 Jul;26(7):761-74. doi: 10.1038/cr.2016.69. Epub 2016 May 31.

48.

Bridging the Academia/Industry Chasm: Proposed Solutions.

Beninger P, Boumil M, Salem D, Getz K, Klapholz H, Curfman GD, Jotwani R, Berman H.

J Clin Pharmacol. 2016 Dec;56(12):1457-1460. doi: 10.1002/jcph.762. Epub 2016 Jun 7. No abstract available.

PMID:
27149908
49.

Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop.

Adams PD, Aertgeerts K, Bauer C, Bell JA, Berman HM, Bhat TN, Blaney JM, Bolton E, Bricogne G, Brown D, Burley SK, Case DA, Clark KL, Darden T, Emsley P, Feher VA, Feng Z, Groom CR, Harris SF, Hendle J, Holder T, Joachimiak A, Kleywegt GJ, Krojer T, Marcotrigiano J, Mark AE, Markley JL, Miller M, Minor W, Montelione GT, Murshudov G, Nakagawa A, Nakamura H, Nicholls A, Nicklaus M, Nolte RT, Padyana AK, Peishoff CE, Pieniazek S, Read RJ, Shao C, Sheriff S, Smart O, Soisson S, Spurlino J, Stouch T, Svobodova R, Tempel W, Terwilliger TC, Tronrud D, Velankar S, Ward SC, Warren GL, Westbrook JD, Williams P, Yang H, Young J.

Structure. 2016 Apr 5;24(4):502-508. doi: 10.1016/j.str.2016.02.017.

50.

Extracellular Tau Oligomers Produce An Immediate Impairment of LTP and Memory.

Fá M, Puzzo D, Piacentini R, Staniszewski A, Zhang H, Baltrons MA, Li Puma DD, Chatterjee I, Li J, Saeed F, Berman HL, Ripoli C, Gulisano W, Gonzalez J, Tian H, Costa JA, Lopez P, Davidowitz E, Yu WH, Haroutunian V, Brown LM, Palmeri A, Sigurdsson EM, Duff KE, Teich AF, Honig LS, Sierks M, Moe JG, D'Adamio L, Grassi C, Kanaan NM, Fraser PE, Arancio O.

Sci Rep. 2016 Jan 20;6:19393. doi: 10.1038/srep19393.

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