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Items: 22

1.

X-Chromosome Inactivation and Escape from X Inactivation in Mouse.

Ma W, Bonora G, Berletch JB, Deng X, Noble WS, Disteche CM.

Methods Mol Biol. 2018;1861:205-219. doi: 10.1007/978-1-4939-8766-5_15.

PMID:
30218369
2.

A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility.

Cusanovich DA, Hill AJ, Aghamirzaie D, Daza RM, Pliner HA, Berletch JB, Filippova GN, Huang X, Christiansen L, DeWitt WS, Lee C, Regalado SG, Read DF, Steemers FJ, Disteche CM, Trapnell C, Shendure J.

Cell. 2018 Aug 23;174(5):1309-1324.e18. doi: 10.1016/j.cell.2018.06.052. Epub 2018 Aug 2.

PMID:
30078704
3.

Orientation-dependent Dxz4 contacts shape the 3D structure of the inactive X chromosome.

Bonora G, Deng X, Fang H, Ramani V, Qiu R, Berletch JB, Filippova GN, Duan Z, Shendure J, Noble WS, Disteche CM.

Nat Commun. 2018 Apr 13;9(1):1445. doi: 10.1038/s41467-018-03694-y.

4.

Allele-specific non-CG DNA methylation marks domains of active chromatin in female mouse brain.

Keown CL, Berletch JB, Castanon R, Nery JR, Disteche CM, Ecker JR, Mukamel EA.

Proc Natl Acad Sci U S A. 2017 Apr 4;114(14):E2882-E2890. doi: 10.1073/pnas.1611905114. Epub 2017 Mar 20.

5.

Identification of genes escaping X inactivation by allelic expression analysis in a novel hybrid mouse model.

Berletch JB, Ma W, Yang F, Shendure J, Noble WS, Disteche CM, Deng X.

Data Brief. 2015 Nov 3;5:761-9. doi: 10.1016/j.dib.2015.10.033. eCollection 2015 Dec.

6.

X-chromosome inactivation and escape.

Disteche CM, Berletch JB.

J Genet. 2015 Dec;94(4):591-9. Review.

7.

Bipartite structure of the inactive mouse X chromosome.

Deng X, Ma W, Ramani V, Hill A, Yang F, Ay F, Berletch JB, Blau CA, Shendure J, Duan Z, Noble WS, Disteche CM.

Genome Biol. 2015 Aug 7;16:152. doi: 10.1186/s13059-015-0728-8.

8.

The lncRNA Firre anchors the inactive X chromosome to the nucleolus by binding CTCF and maintains H3K27me3 methylation.

Yang F, Deng X, Ma W, Berletch JB, Rabaia N, Wei G, Moore JM, Filippova GN, Xu J, Liu Y, Noble WS, Shendure J, Disteche CM.

Genome Biol. 2015 Mar 12;16:52. doi: 10.1186/s13059-015-0618-0.

9.

Escape from X inactivation varies in mouse tissues.

Berletch JB, Ma W, Yang F, Shendure J, Noble WS, Disteche CM, Deng X.

PLoS Genet. 2015 Mar 18;11(3):e1005079. doi: 10.1371/journal.pgen.1005079. eCollection 2015 Mar.

10.

X chromosome regulation: diverse patterns in development, tissues and disease.

Deng X, Berletch JB, Nguyen DK, Disteche CM.

Nat Rev Genet. 2014 Jun;15(6):367-78. doi: 10.1038/nrg3687. Epub 2014 Apr 15. Review.

11.

Female bias in Rhox6 and 9 regulation by the histone demethylase KDM6A.

Berletch JB, Deng X, Nguyen DK, Disteche CM.

PLoS Genet. 2013 May;9(5):e1003489. doi: 10.1371/journal.pgen.1003489. Epub 2013 May 2.

12.

Mammalian X upregulation is associated with enhanced transcription initiation, RNA half-life, and MOF-mediated H4K16 acetylation.

Deng X, Berletch JB, Ma W, Nguyen DK, Hiatt JB, Noble WS, Shendure J, Disteche CM.

Dev Cell. 2013 Apr 15;25(1):55-68. doi: 10.1016/j.devcel.2013.01.028. Epub 2013 Mar 21.

13.

Genes that escape from X inactivation.

Berletch JB, Yang F, Xu J, Carrel L, Disteche CM.

Hum Genet. 2011 Aug;130(2):237-45. doi: 10.1007/s00439-011-1011-z. Epub 2011 May 26. Review.

14.

Genome-wide distribution of macroH2A1 histone variants in mouse liver chromatin.

Changolkar LN, Singh G, Cui K, Berletch JB, Zhao K, Disteche CM, Pehrson JR.

Mol Cell Biol. 2010 Dec;30(23):5473-83. doi: 10.1128/MCB.00518-10. Epub 2010 Oct 11.

15.

Escape from X inactivation in mice and humans.

Berletch JB, Yang F, Disteche CM.

Genome Biol. 2010;11(6):213. doi: 10.1186/gb-2010-11-6-213. Epub 2010 Jun 24. Review.

16.

The Novel Retinoid, 9cUAB30, Inhibits Telomerase and Induces Apoptosis in HL60 Cells.

Love WK, Deangelis JT, Berletch JB, Phipps SM, Andrews LG, Brouillette WJ, Muccio DD, Tollefsbol TO.

Transl Oncol. 2008 Sep;1(3):148-52.

17.

Epigenetic regulation of telomerase in retinoid-induced differentiation of human leukemia cells.

Love WK, Berletch JB, Andrews LG, Tollefsbol TO.

Int J Oncol. 2008 Mar;32(3):625-31.

18.

A method to study the expression of DNA methyltransferases in aging systems in vitro.

Berletch JB, Phipps SM, Walthall SL, Andrews LG, Tollefsbol TO.

Methods Mol Biol. 2007;371:81-7. Review.

19.

A method to detect DNA methyltransferase I gene transcription in vitro in aging systems.

Berletch JB, Andrews LG, Tollefsbol TO.

Methods Mol Biol. 2007;371:73-80. Review.

20.

Aging cell culture: methods and observations.

Phipps SM, Berletch JB, Andrews LG, Tollefsbol TO.

Methods Mol Biol. 2007;371:9-19. Review.

21.

Epigenetic and genetic mechanisms contribute to telomerase inhibition by EGCG.

Berletch JB, Liu C, Love WK, Andrews LG, Katiyar SK, Tollefsbol TO.

J Cell Biochem. 2008 Feb 1;103(2):509-19.

22.

Telomerase inhibition by retinoids precedes cytodifferentiation of leukemia cells and may contribute to terminal differentiation.

Liu L, Berletch JB, Green JG, Pate MS, Andrews LG, Tollefsbol TO.

Mol Cancer Ther. 2004 Aug;3(8):1003-9.

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