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Items: 22

1.

GeneHunt for rapid domain-specific annotation of glycoside hydrolases.

Nguyen SN, Flores A, Talamantes D, Dar F, Valdez A, Schwans J, Berlemont R.

Sci Rep. 2019 Jul 12;9(1):10137. doi: 10.1038/s41598-019-46290-w.

2.

Crystal structure determination of Pseudomonas stutzeri A1501 endoglucanase Cel5A: the search for a molecular basis for glycosynthesis in GH5_5 enzymes.

Dutoit R, Delsaute M, Collet L, Vander Wauven C, Van Elder D, Berlemont R, Richel A, Galleni M, Bauvois C.

Acta Crystallogr D Struct Biol. 2019 Jun 1;75(Pt 6):605-615. doi: 10.1107/S2059798319007113. Epub 2019 Jun 6.

PMID:
31205022
3.

Drought increases the frequencies of fungal functional genes related to carbon and nitrogen acquisition.

Treseder KK, Berlemont R, Allison SD, Martiny AC.

PLoS One. 2018 Nov 21;13(11):e0206441. doi: 10.1371/journal.pone.0206441. eCollection 2018.

4.

Draft Genome Sequences of Nine New Carnobacterium maltaromaticum Strains Isolated from Diseased Sharks.

Martinez-Steele L, Lowe CG, Okihiro MS, Berlemont R.

Genome Announc. 2018 May 3;6(18). pii: e00354-18. doi: 10.1128/genomeA.00354-18.

5.

Function, distribution, and annotation of characterized cellulases, xylanases, and chitinases from CAZy.

Nguyen STC, Freund HL, Kasanjian J, Berlemont R.

Appl Microbiol Biotechnol. 2018 Feb;102(4):1629-1637. doi: 10.1007/s00253-018-8778-y. Epub 2018 Jan 22. Review.

6.

Distribution and diversity of enzymes for polysaccharide degradation in fungi.

Berlemont R.

Sci Rep. 2017 Mar 16;7(1):222. doi: 10.1038/s41598-017-00258-w.

7.

Glycoside Hydrolases across Environmental Microbial Communities.

Berlemont R, Martiny AC.

PLoS Comput Biol. 2016 Dec 19;12(12):e1005300. doi: 10.1371/journal.pcbi.1005300. eCollection 2016 Dec.

8.

Evidence for Ecological Flexibility in the Cosmopolitan Genus Curtobacterium.

Chase AB, Arevalo P, Polz MF, Berlemont R, Martiny JB.

Front Microbiol. 2016 Nov 22;7:1874. eCollection 2016.

9.

Microbial legacies alter decomposition in response to simulated global change.

Martiny JB, Martiny AC, Weihe C, Lu Y, Berlemont R, Brodie EL, Goulden ML, Treseder KK, Allison SD.

ISME J. 2017 Feb;11(2):490-499. doi: 10.1038/ismej.2016.122. Epub 2016 Oct 14.

10.

Natural diversity of cellulases, xylanases, and chitinases in bacteria.

Talamantes D, Biabini N, Dang H, Abdoun K, Berlemont R.

Biotechnol Biofuels. 2016 Jun 29;9:133. doi: 10.1186/s13068-016-0538-6. eCollection 2016.

11.

Nitrogen Cycling Potential of a Grassland Litter Microbial Community.

Nelson MB, Berlemont R, Martiny AC, Martiny JB.

Appl Environ Microbiol. 2015 Oct;81(20):7012-22. doi: 10.1128/AEM.02222-15. Epub 2015 Jul 31.

12.

Microbial response to simulated global change is phylogenetically conserved and linked with functional potential.

Amend AS, Martiny AC, Allison SD, Berlemont R, Goulden ML, Lu Y, Treseder KK, Weihe C, Martiny JB.

ISME J. 2016 Jan;10(1):109-18. doi: 10.1038/ismej.2015.96. Epub 2015 Jun 5.

13.

Temporal variation overshadows the response of leaf litter microbial communities to simulated global change.

Matulich KL, Weihe C, Allison SD, Amend AS, Berlemont R, Goulden ML, Kimball S, Martiny AC, Martiny JB.

ISME J. 2015 Nov;9(11):2477-89. doi: 10.1038/ismej.2015.58. Epub 2015 May 15.

14.

Genomic potential for polysaccharide deconstruction in bacteria.

Berlemont R, Martiny AC.

Appl Environ Microbiol. 2015 Feb;81(4):1513-19.

15.

Cellulolytic potential under environmental changes in microbial communities from grassland litter.

Berlemont R, Allison SD, Weihe C, Lu Y, Brodie EL, Martiny JB, Martiny AC.

Front Microbiol. 2014 Nov 25;5:639. doi: 10.3389/fmicb.2014.00639. eCollection 2014.

16.

Three-dimensional structure of RBcel1, a metagenome-derived psychrotolerant family GH5 endoglucanase.

Delsaute M, Berlemont R, Dehareng D, Van Elder D, Galleni M, Bauvois C.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Aug;69(Pt 8):828-33. doi: 10.1107/S1744309113014565. Epub 2013 Jul 26.

17.

Novel organic solvent-tolerant esterase isolated by metagenomics: insights into the lipase/esterase classification.

Berlemont R, Spee O, Delsaute M, Lara Y, Schuldes J, Simon C, Power P, Daniel R, Galleni M.

Rev Argent Microbiol. 2013 Jan-Mar;45(1):3-12.

18.

Novel Cold-Adapted Esterase MHlip from an Antarctic Soil Metagenome.

Berlemont R, Jacquin O, Delsaute M, La Salla M, Georis J, Verté F, Galleni M, Power P.

Biology (Basel). 2013 Jan 25;2(1):177-88. doi: 10.3390/biology2010177.

19.

Phylogenetic distribution of potential cellulases in bacteria.

Berlemont R, Martiny AC.

Appl Environ Microbiol. 2013 Mar;79(5):1545-54. doi: 10.1128/AEM.03305-12. Epub 2012 Dec 21.

20.

Exploring the Antarctic soil metagenome as a source of novel cold-adapted enzymes and genetic mobile elements.

Berlemont R, Pipers D, Delsaute M, Angiono F, Feller G, Galleni M, Power P.

Rev Argent Microbiol. 2011 Apr-May;43(2):94-103. doi: 10.1590/S0325-75412011000200005.

21.

Insights into bacterial cellulose biosynthesis by functional metagenomics on Antarctic soil samples.

Berlemont R, Delsaute M, Pipers D, D'Amico S, Feller G, Galleni M, Power P.

ISME J. 2009 Sep;3(9):1070-81. doi: 10.1038/ismej.2009.48. Epub 2009 May 21.

22.

A novel extended-spectrum TEM-type beta-lactamase, TEM-138, from Salmonella enterica serovar Infantis.

Chouchani C, Berlemont R, Masmoudi A, Galleni M, Frere JM, Belhadj O, Ben-Mahrez K.

Antimicrob Agents Chemother. 2006 Sep;50(9):3183-5.

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