Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 51

1.

Pavement patterns can be designed to improve gait in Parkinson's disease patients.

Gál O, Poláková K, Hoskovcová M, Tomandl J, Čapek V, Berka R, Brožová H, Šestáková I, Růžička E.

Mov Disord. 2019 Aug 23. doi: 10.1002/mds.27831. [Epub ahead of print]

PMID:
31442358
2.

Draft genome sequence of a monokaryotic model brown-rot fungus Postia (Rhodonia) placenta SB12.

Gaskell J, Kersten P, Larrondo LF, Canessa P, Martinez D, Hibbett D, Schmoll M, Kubicek CP, Martinez AT, Yadav J, Master E, Magnuson JK, Yaver D, Berka R, Lail K, Chen C, LaButti K, Nolan M, Lipzen A, Aerts A, Riley R, Barry K, Henrissat B, Blanchette R, Grigoriev IV, Cullen D.

Genom Data. 2017 Aug 10;14:21-23. doi: 10.1016/j.gdata.2017.08.003. eCollection 2017 Dec. No abstract available.

3.

The first European cave fish.

Behrmann-Godel J, Nolte AW, Kreiselmaier J, Berka R, Freyhof J.

Curr Biol. 2017 Apr 3;27(7):R257-R258. doi: 10.1016/j.cub.2017.02.048.

4.

From the Lab to the Farm: An Industrial Perspective of Plant Beneficial Microorganisms.

Parnell JJ, Berka R, Young HA, Sturino JM, Kang Y, Barnhart DM, DiLeo MV.

Front Plant Sci. 2016 Aug 4;7:1110. doi: 10.3389/fpls.2016.01110. eCollection 2016. Review.

5.

Genetics of mating in members of the Chaetomiaceae as revealed by experimental and genomic characterization of reproduction in Myceliophthora heterothallica.

Hutchinson MI, Powell AJ, Tsang A, O'Toole N, Berka RM, Barry K, Grigoriev IV, Natvig DO.

Fungal Genet Biol. 2016 Jan;86:9-19. doi: 10.1016/j.fgb.2015.11.007. Epub 2015 Nov 30.

PMID:
26608618
6.

Analysis of the Phlebiopsis gigantea genome, transcriptome and secretome provides insight into its pioneer colonization strategies of wood.

Hori C, Ishida T, Igarashi K, Samejima M, Suzuki H, Master E, Ferreira P, Ruiz-Dueñas FJ, Held B, Canessa P, Larrondo LF, Schmoll M, Druzhinina IS, Kubicek CP, Gaskell JA, Kersten P, St John F, Glasner J, Sabat G, Splinter BonDurant S, Syed K, Yadav J, Mgbeahuruike AC, Kovalchuk A, Asiegbu FO, Lackner G, Hoffmeister D, Rencoret J, Gutiérrez A, Sun H, Lindquist E, Barry K, Riley R, Grigoriev IV, Henrissat B, Kües U, Berka RM, Martínez AT, Covert SF, Blanchette RA, Cullen D.

PLoS Genet. 2014 Dec 4;10(12):e1004759. doi: 10.1371/journal.pgen.1004759. eCollection 2014 Dec.

7.

Metabolic engineering of Aspergillus oryzae NRRL 3488 for increased production of L-malic acid.

Brown SH, Bashkirova L, Berka R, Chandler T, Doty T, McCall K, McCulloch M, McFarland S, Thompson S, Yaver D, Berry A.

Appl Microbiol Biotechnol. 2013 Oct;97(20):8903-12. doi: 10.1007/s00253-013-5132-2. Epub 2013 Aug 8.

PMID:
23925533
8.

Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis.

Fernandez-Fueyo E, Ruiz-Dueñas FJ, Ferreira P, Floudas D, Hibbett DS, Canessa P, Larrondo LF, James TY, Seelenfreund D, Lobos S, Polanco R, Tello M, Honda Y, Watanabe T, Watanabe T, Ryu JS, Kubicek CP, Schmoll M, Gaskell J, Hammel KE, St John FJ, Vanden Wymelenberg A, Sabat G, Splinter BonDurant S, Syed K, Yadav JS, Doddapaneni H, Subramanian V, Lavín JL, Oguiza JA, Perez G, Pisabarro AG, Ramirez L, Santoyo F, Master E, Coutinho PM, Henrissat B, Lombard V, Magnuson JK, Kües U, Hori C, Igarashi K, Samejima M, Held BW, Barry KW, LaButti KM, Lapidus A, Lindquist EA, Lucas SM, Riley R, Salamov AA, Hoffmeister D, Schwenk D, Hadar Y, Yarden O, de Vries RP, Wiebenga A, Stenlid J, Eastwood D, Grigoriev IV, Berka RM, Blanchette RA, Kersten P, Martinez AT, Vicuna R, Cullen D.

Proc Natl Acad Sci U S A. 2012 Apr 3;109(14):5458-63. doi: 10.1073/pnas.1119912109. Epub 2012 Mar 20. Erratum in: Proc Natl Acad Sci U S A. 2012 May 22;109(21):8352. San, Ryu Jae [corrected to Ryu, Jae San].

9.

Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris.

Berka RM, Grigoriev IV, Otillar R, Salamov A, Grimwood J, Reid I, Ishmael N, John T, Darmond C, Moisan MC, Henrissat B, Coutinho PM, Lombard V, Natvig DO, Lindquist E, Schmutz J, Lucas S, Harris P, Powlowski J, Bellemare A, Taylor D, Butler G, de Vries RP, Allijn IE, van den Brink J, Ushinsky S, Storms R, Powell AJ, Paulsen IT, Elbourne LD, Baker SE, Magnuson J, Laboissiere S, Clutterbuck AJ, Martinez D, Wogulis M, de Leon AL, Rey MW, Tsang A.

Nat Biotechnol. 2011 Oct 2;29(10):922-7. doi: 10.1038/nbt.1976.

PMID:
21964414
10.

Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88.

Andersen MR, Salazar MP, Schaap PJ, van de Vondervoort PJ, Culley D, Thykaer J, Frisvad JC, Nielsen KF, Albang R, Albermann K, Berka RM, Braus GH, Braus-Stromeyer SA, Corrochano LM, Dai Z, van Dijck PW, Hofmann G, Lasure LL, Magnuson JK, Menke H, Meijer M, Meijer SL, Nielsen JB, Nielsen ML, van Ooyen AJ, Pel HJ, Poulsen L, Samson RA, Stam H, Tsang A, van den Brink JM, Atkins A, Aerts A, Shapiro H, Pangilinan J, Salamov A, Lou Y, Lindquist E, Lucas S, Grimwood J, Grigoriev IV, Kubicek CP, Martinez D, van Peij NN, Roubos JA, Nielsen J, Baker SE.

Genome Res. 2011 Jun;21(6):885-97. doi: 10.1101/gr.112169.110. Epub 2011 May 4.

11.

Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing.

Le Crom S, Schackwitz W, Pennacchio L, Magnuson JK, Culley DE, Collett JR, Martin J, Druzhinina IS, Mathis H, Monot F, Seiboth B, Cherry B, Rey M, Berka R, Kubicek CP, Baker SE, Margeot A.

Proc Natl Acad Sci U S A. 2009 Sep 22;106(38):16151-6. doi: 10.1073/pnas.0905848106. Epub 2009 Sep 2.

12.

Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion.

Martinez D, Challacombe J, Morgenstern I, Hibbett D, Schmoll M, Kubicek CP, Ferreira P, Ruiz-Duenas FJ, Martinez AT, Kersten P, Hammel KE, Vanden Wymelenberg A, Gaskell J, Lindquist E, Sabat G, Bondurant SS, Larrondo LF, Canessa P, Vicuna R, Yadav J, Doddapaneni H, Subramanian V, Pisabarro AG, Lavín JL, Oguiza JA, Master E, Henrissat B, Coutinho PM, Harris P, Magnuson JK, Baker SE, Bruno K, Kenealy W, Hoegger PJ, Kües U, Ramaiya P, Lucas S, Salamov A, Shapiro H, Tu H, Chee CL, Misra M, Xie G, Teter S, Yaver D, James T, Mokrejs M, Pospisek M, Grigoriev IV, Brettin T, Rokhsar D, Berka R, Cullen D.

Proc Natl Acad Sci U S A. 2009 Feb 10;106(6):1954-9. doi: 10.1073/pnas.0809575106. Epub 2009 Feb 4.

13.

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina).

Martinez D, Berka RM, Henrissat B, Saloheimo M, Arvas M, Baker SE, Chapman J, Chertkov O, Coutinho PM, Cullen D, Danchin EG, Grigoriev IV, Harris P, Jackson M, Kubicek CP, Han CS, Ho I, Larrondo LF, de Leon AL, Magnuson JK, Merino S, Misra M, Nelson B, Putnam N, Robbertse B, Salamov AA, Schmoll M, Terry A, Thayer N, Westerholm-Parvinen A, Schoch CL, Yao J, Barabote R, Nelson MA, Detter C, Bruce D, Kuske CR, Xie G, Richardson P, Rokhsar DS, Lucas SM, Rubin EM, Dunn-Coleman N, Ward M, Brettin TS.

Nat Biotechnol. 2008 May;26(5):553-60. doi: 10.1038/nbt1403. Epub 2008 May 4. Erratum in: Nat Biotechnol. 2008 Oct;26(10):1193.. Barbote, Ravi [corrected to Barabote, Ravi].

PMID:
18454138
14.

Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillus species.

Rey MW, Ramaiya P, Nelson BA, Brody-Karpin SD, Zaretsky EJ, Tang M, Lopez de Leon A, Xiang H, Gusti V, Clausen IG, Olsen PB, Rasmussen MD, Andersen JT, Jørgensen PL, Larsen TS, Sorokin A, Bolotin A, Lapidus A, Galleron N, Ehrlich SD, Berka RM.

Genome Biol. 2004;5(10):R77. Epub 2004 Sep 13.

15.

Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78.

Martinez D, Larrondo LF, Putnam N, Gelpke MD, Huang K, Chapman J, Helfenbein KG, Ramaiya P, Detter JC, Larimer F, Coutinho PM, Henrissat B, Berka R, Cullen D, Rokhsar D.

Nat Biotechnol. 2004 Jun;22(6):695-700. Epub 2004 May 2. Erratum in: Nat Biotechnol. 2004 Jul;22(7):899.

PMID:
15122302
16.
17.

A new non-linear normalization method for reducing variability in DNA microarray experiments.

Workman C, Jensen LJ, Jarmer H, Berka R, Gautier L, Nielser HB, Saxild HH, Nielsen C, Brunak S, Knudsen S.

Genome Biol. 2002 Aug 30;3(9):research0048. Epub 2002 Aug 30.

18.

Microarray analysis of the Bacillus subtilis K-state: genome-wide expression changes dependent on ComK.

Berka RM, Hahn J, Albano M, Draskovic I, Persuh M, Cui X, Sloma A, Widner W, Dubnau D.

Mol Microbiol. 2002 Mar;43(5):1331-45.

19.

Transcriptome analysis documents induced competence of Bacillus subtilis during nitrogen limiting conditions.

Jarmer H, Berka R, Knudsen S, Saxild HH.

FEMS Microbiol Lett. 2002 Jan 10;206(2):197-200.

20.

Cloning of the Aspergillus oryzae 5-aminolevulinate synthase gene and its use as a selectable marker.

Elrod SL, Jones A, Berka RM, Cherry JR.

Curr Genet. 2000 Dec;38(5):291-8.

PMID:
11191214
21.

Biochemical analysis of recombinant fungal mutanases. A new family of alpha1,3-glucanases with novel carbohydrate-binding domains.

Fuglsang CC, Berka RM, Wahleithner JA, Kauppinen S, Shuster JR, Rasmussen G, Halkier T, Dalboge H, Henrissat B.

J Biol Chem. 2000 Jan 21;275(3):2009-18.

22.

Risk of cesarean delivery with elective induction of labor at term in nulliparous women.

Seyb ST, Berka RJ, Socol ML, Dooley SL.

Obstet Gynecol. 1999 Oct;94(4):600-7.

PMID:
10511367
23.

Targeted mutations in a Trametes villosa laccase. Axial perturbations of the T1 copper.

Xu F, Palmer AE, Yaver DS, Berka RM, Gambetta GA, Brown SH, Solomon EI.

J Biol Chem. 1999 Apr 30;274(18):12372-5.

24.

Molecular characterization and expression of a phytase gene from the thermophilic fungus Thermomyces lanuginosus.

Berka RM, Rey MW, Brown KM, Byun T, Klotz AV.

Appl Environ Microbiol. 1998 Nov;64(11):4423-7.

25.

Site-directed mutations in fungal laccase: effect on redox potential, activity and pH profile.

Xu F, Berka RM, Wahleithner JA, Nelson BA, Shuster JR, Brown SH, Palmer AE, Solomon EI.

Biochem J. 1998 Aug 15;334 ( Pt 1):63-70.

26.
27.

Characterization of the gene encoding an extracellular laccase of Myceliophthora thermophila and analysis of the recombinant enzyme expressed in Aspergillus oryzae.

Berka RM, Schneider P, Golightly EJ, Brown SH, Madden M, Brown KM, Halkier T, Mondorf K, Xu F.

Appl Environ Microbiol. 1997 Aug;63(8):3151-7.

28.

Economically important organic acid and enzyme products.

Bodie EA, Bower B, Berka RM, Dunn-Coleman NS.

Prog Ind Microbiol. 1994;29:561-602. Review. No abstract available.

PMID:
7520592
29.
30.

Isolation and characterization of the Aspergillus oryzae gene encoding aspergillopepsin O.

Berka RM, Carmona CL, Hayenga KJ, Thompson SA, Ward M.

Gene. 1993 Mar 30;125(2):195-8.

PMID:
8462873
31.

Industrial enzymes from Aspergillus species.

Berka RM, Dunn-Coleman N, Ward M.

Biotechnology. 1992;23:155-202. Review. No abstract available.

PMID:
1504596
32.

Commercial levels of chymosin production by Aspergillus.

Dunn-Coleman NS, Bloebaum P, Berka RM, Bodie E, Robinson N, Armstrong G, Ward M, Przetak M, Carter GL, LaCost R, et al.

Biotechnology (N Y). 1991 Oct;9(10):976-81.

PMID:
1368725
33.

Gene expression systems for filamentous fungi.

Fowler T, Berka RM.

Curr Opin Biotechnol. 1991 Oct;2(5):691-7. Review.

PMID:
1367719
34.

The development of Aspergillus niger var. awamori as a host for the expression and secretion of heterologous gene products.

Berka RM, Kodama KH, Rey MW, Wilson LJ, Ward M.

Biochem Soc Trans. 1991 Aug;19(3):681-5. Review. No abstract available.

PMID:
1783197
37.

Regulation of the glaA gene of Aspergillus niger.

Fowler T, Berka RM, Ward M.

Curr Genet. 1990 Dec;18(6):537-45.

PMID:
2076554
38.

Improved production of chymosin in Aspergillus by expression as a glucoamylase-chymosin fusion.

Ward M, Wilson LJ, Kodama KH, Rey MW, Berka RM.

Biotechnology (N Y). 1990 May;8(5):435-40.

PMID:
1366537
39.

The promoter of the glucoamylase-encoding gene of Aspergillus niger functions in Ustilago maydis.

Smith TL, Gaskell J, Berka RM, Yang M, Henner DJ, Cullen D.

Gene. 1990 Apr 16;88(2):259-62.

PMID:
2112106
40.

Cloning, characterization, and expression of two alpha-amylase genes from Aspergillus niger var. awamori.

Korman DR, Bayliss FT, Barnett CC, Carmona CL, Kodama KH, Royer TJ, Thompson SA, Ward M, Wilson LJ, Berka RM.

Curr Genet. 1990 Mar;17(3):203-12.

PMID:
2340591
41.

Molecular cloning and deletion of the gene encoding aspergillopepsin A from Aspergillus awamori.

Berka RM, Ward M, Wilson LJ, Hayenga KJ, Kodama KH, Carlomagno LP, Thompson SA.

Gene. 1990 Feb 14;86(2):153-62. Erratum in: Gene. 1990 Dec 15;96(2):313.

PMID:
2182390
42.

The development of gene expression systems for filamentous fungi.

Berka RM, Barnett CC.

Biotechnol Adv. 1989;7(2):127-54.

PMID:
14545929
43.

Molecular cloning vectors for Aspergillus and Neurospora.

Cullen D, Gray GL, Berka RM.

Biotechnology. 1988;10:419-33. Review. No abstract available.

PMID:
2974737
44.

Biochemical and genetic studies of iron-regulated (exotoxin A) and phosphate-regulated (hemolysin phospholipase C) virulence factors of Pseudomonas aeruginosa.

Vasil ML, Berka RM, Gray GL, Pavlovskis OR.

Antibiot Chemother (1971). 1985;36:23-39. No abstract available.

PMID:
2988425
45.

Relation between antibody response to Pseudomonas aeruginosa exoproteins and colonization/infection in patients with cystic fibrosis.

Granström M, Ericsson A, Strandvik B, Wretlind B, Pavlovskis OR, Berka R, Vasil ML.

Acta Paediatr Scand. 1984 Nov;73(6):772-7.

PMID:
6441448
46.

Identification and characterization of Campylobacter jejuni outer membrane proteins.

Blaser MJ, Hopkins JA, Berka RM, Vasil ML, Wang WL.

Infect Immun. 1983 Oct;42(1):276-84.

47.

Cloning of a phosphate-regulated hemolysin gene (phospholipase C) from Pseudomonas aeruginosa.

Vasil ML, Berka RM, Gray GL, Nakai H.

J Bacteriol. 1982 Oct;152(1):431-40.

50.

Studies of phospholipase C (heat-labile hemolysin) in Pseudomonas aeruginosa.

Berka RM, Gray GL, Vasil ML.

Infect Immun. 1981 Dec;34(3):1071-4.

Supplemental Content

Support Center