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Items: 1 to 50 of 413

1.

Patient-Derived Xenografts Can Be Reliably Generated from Patient Clinical Biopsy Specimens.

Hernandez MC, Bergquist JR, Leiting JL, Ivanics T, Yang L, Smoot RL, Nagorney DM, Truty MJ.

J Gastrointest Surg. 2019 Feb 12. doi: 10.1007/s11605-019-04109-z. [Epub ahead of print]

PMID:
30756315
2.

Surgery and chemotherapy are associated with improved overall survival in anal adenocarcinoma: results of a national cohort study.

McKenna NP, Bergquist JR, Habermann EB, Chua HK, Kelley SR, Mathis KL.

Int J Colorectal Dis. 2019 Jan 11. doi: 10.1007/s00384-018-03232-8. [Epub ahead of print]

PMID:
30635718
3.

Radiation Therapy for Retroperitoneal Sarcomas: Influences of Histology, Grade, and Size.

Leiting JL, Bergquist JR, Hernandez MC, Merrell KW, Folpe AL, Robinson SI, Nagorney DM, Truty MJ, Grotz TE.

Sarcoma. 2018 Dec 5;2018:7972389. doi: 10.1155/2018/7972389. eCollection 2018.

4.

A Novel Targeted Analysis of Peripheral Steroids by Ultra-Performance Supercritical Fluid Chromatography Hyphenated to Tandem Mass Spectrometry.

de Kock N, Acharya SR, Ubhayasekera SJKA, Bergquist J.

Sci Rep. 2018 Nov 19;8(1):16993. doi: 10.1038/s41598-018-35007-0.

5.

Proteomic approach for understanding milder neurotoxicity of Carfilzomib against Bortezomib.

Karademir B, Sari G, Jannuzzi AT, Musunuri S, Wicher G, Grune T, Mi J, Hacioglu-Bay H, Forsberg-Nilsson K, Bergquist J, Jung T.

Sci Rep. 2018 Nov 5;8(1):16318. doi: 10.1038/s41598-018-34507-3.

6.

Regional diversity of complex dissolved organic matter across forested hemiboreal headwater streams.

Hawkes JA, Radoman N, Bergquist J, Wallin MB, Tranvik LJ, Löfgren S.

Sci Rep. 2018 Oct 30;8(1):16060. doi: 10.1038/s41598-018-34272-3.

7.

Qualitative analysis of antibody-drug conjugates (ADCs): an experimental comparison of analytical techniques of cysteine-linked ADCs.

Källsten M, Hartmann R, Artemenko K, Lind SB, Lehmann F, Bergquist J.

Analyst. 2018 Nov 5;143(22):5487-5496. doi: 10.1039/c8an01178h.

PMID:
30289422
8.

Successful Secondary Engraftment of Pancreatic Ductal Adenocarcinoma and Cholangiocarcinoma Patient-Derived Xenografts After Previous Failed Primary Engraftment.

Hernandez MC, Yang L, Leiting JL, Sugihara T, Bergquist JR, Ivanics T, Graham R, Truty MJ.

Transl Oncol. 2019 Jan;12(1):69-75. doi: 10.1016/j.tranon.2018.09.008. Epub 2018 Sep 28.

9.

Early Diuresis After Colon and Rectal Surgery Does Not Reduce Length of Hospital Stay: Results of a Randomized Trial.

Danelich IM, Bergquist JR, Bergquist WJ, Osborn JL, Wright SS, Tefft BJ, Sturm AW, Langworthy DR, Mandrekar J, Devine RM, Kelley SR, Mathis KL, Pemberton JH, Jacob AK, Larson DW.

Dis Colon Rectum. 2018 Oct;61(10):1187-1195. doi: 10.1097/DCR.0000000000001183.

PMID:
30192327
10.

Acute sleep loss results in tissue-specific alterations in genome-wide DNA methylation state and metabolic fuel utilization in humans.

Cedernaes J, Schönke M, Westholm JO, Mi J, Chibalin A, Voisin S, Osler M, Vogel H, Hörnaeus K, Dickson SL, Lind SB, Bergquist J, Schiöth HB, Zierath JR, Benedict C.

Sci Adv. 2018 Aug 22;4(8):eaar8590. doi: 10.1126/sciadv.aar8590. eCollection 2018 Aug.

11.

A novel, fast and sensitive supercritical fluid chromatography-tandem mass spectrometry (SFC-MS/MS) method for analysis of arachidonic acid metabolites.

Kumari A Ubhayasekera SJ, Acharya SR, Bergquist J.

Analyst. 2018 Jul 23;143(15):3661-3669. doi: 10.1039/c8an00788h.

PMID:
29971278
12.

Quantitative Proteomics of TRAMP Mice Combined with Bioinformatics Analysis Reveals That PDGF-B Regulatory Network Plays a Key Role in Prostate Cancer Progression.

Zhang Y, Wang D, Li M, Wei X, Liu S, Zhao M, Liu C, Wang X, Jiang X, Li X, Zhang S, Bergquist J, Wang B, Yang C, Mi J, Tian G.

J Proteome Res. 2018 Jul 6;17(7):2401-2411. doi: 10.1021/acs.jproteome.8b00158. Epub 2018 Jun 14.

PMID:
29863873
13.

The proteome of perilymph in patients with vestibular schwannoma. A possibility to identify biomarkers for tumor associated hearing loss?

Edvardsson Rasmussen J, Laurell G, Rask-Andersen H, Bergquist J, Eriksson PO.

PLoS One. 2018 Jun 1;13(6):e0198442. doi: 10.1371/journal.pone.0198442. eCollection 2018.

14.

Proteomic differences between focal and diffuse traumatic brain injury in human brain tissue.

Abu Hamdeh S, Shevchenko G, Mi J, Musunuri S, Bergquist J, Marklund N.

Sci Rep. 2018 May 1;8(1):6807. doi: 10.1038/s41598-018-25060-0.

15.

Analytical chemistry for a sustainable society - trends and implications.

Bergquist J, Turner C.

Anal Bioanal Chem. 2018 May;410(14):3235-3237. doi: 10.1007/s00216-018-1036-4. No abstract available.

PMID:
29663055
16.

PDLIM5 identified by label-free quantitative proteomics as a potential novel biomarker of papillary thyroid carcinoma.

Wei X, Zhang Y, Yu S, Li S, Jiang W, Zhu Y, Xu Y, Yang C, Tian G, Mi J, Bergquist J, Zhao M, Song F.

Biochem Biophys Res Commun. 2018 May 5;499(2):338-344. doi: 10.1016/j.bbrc.2018.03.159. Epub 2018 Mar 24.

PMID:
29574154
17.

Patient-derived xenograft cryopreservation and reanimation outcomes are dependent on cryoprotectant type.

Ivanics T, Bergquist JR, Liu G, Kim MP, Kang Y, Katz MH, Perez MVR, Thomas RM, Fleming JB, Truty MJ.

Lab Invest. 2018 Jul;98(7):947-956. doi: 10.1038/s41374-018-0042-7. Epub 2018 Mar 8.

18.

Adjuvant systemic therapy after resection of node positive gallbladder cancer: Time for a well-designed trial? (Results of a US-national retrospective cohort study).

Bergquist JR, Shah HN, Habermann EB, Hernandez MC, Ivanics T, Kendrick ML, Smoot RL, Nagorney DM, Borad MJ, McWilliams RR, Truty MJ.

Int J Surg. 2018 Apr;52:171-179. doi: 10.1016/j.ijsu.2018.02.052. Epub 2018 Feb 26.

PMID:
29496648
19.

Online HPLC-ESI-HRMS Method for the Analysis and Comparison of Different Dissolved Organic Matter Samples.

Patriarca C, Bergquist J, Sjöberg PJR, Tranvik L, Hawkes JA.

Environ Sci Technol. 2018 Feb 20;52(4):2091-2099. doi: 10.1021/acs.est.7b04508. Epub 2018 Jan 4.

PMID:
29241333
20.

Characterization of the Giardia intestinalis secretome during interaction with human intestinal epithelial cells: The impact on host cells.

Ma'ayeh SY, Liu J, Peirasmaki D, Hörnaeus K, Bergström Lind S, Grabherr M, Bergquist J, Svärd SG.

PLoS Negl Trop Dis. 2017 Dec 11;11(12):e0006120. doi: 10.1371/journal.pntd.0006120. eCollection 2017 Dec.

21.

Analytical techniques for the characterization of Antibody Drug Conjugates: Challenges and prospects.

Neupane R, Bergquist J.

Eur J Mass Spectrom (Chichester). 2017 Dec;23(6):417-426. doi: 10.1177/1469066717733919. Epub 2017 Sep 28.

PMID:
29183195
22.

Small GTPase ARF6 controls VEGFR2 trafficking and signaling in diabetic retinopathy.

Zhu W, Shi DS, Winter JM, Rich BE, Tong Z, Sorensen LK, Zhao H, Huang Y, Tai Z, Mleynek TM, Yoo JH, Dunn C, Ling J, Bergquist JA, Richards JR, Jiang A, Lesniewski LA, Hartnett ME, Ward DM, Mueller AL, Ostanin K, Thomas KR, Odelberg SJ, Li DY.

J Clin Invest. 2017 Dec 1;127(12):4569-4582. doi: 10.1172/JCI91770. Epub 2017 Oct 23.

23.

Harmonizing lipidomics: NIST interlaboratory comparison exercise for lipidomics using SRM 1950-Metabolites in Frozen Human Plasma.

Bowden JA, Heckert A, Ulmer CZ, Jones CM, Koelmel JP, Abdullah L, Ahonen L, Alnouti Y, Armando AM, Asara JM, Bamba T, Barr JR, Bergquist J, Borchers CH, Brandsma J, Breitkopf SB, Cajka T, Cazenave-Gassiot A, Checa A, Cinel MA, Colas RA, Cremers S, Dennis EA, Evans JE, Fauland A, Fiehn O, Gardner MS, Garrett TJ, Gotlinger KH, Han J, Huang Y, Neo AH, Hyötyläinen T, Izumi Y, Jiang H, Jiang H, Jiang J, Kachman M, Kiyonami R, Klavins K, Klose C, Köfeler HC, Kolmert J, Koal T, Koster G, Kuklenyik Z, Kurland IJ, Leadley M, Lin K, Maddipati KR, McDougall D, Meikle PJ, Mellett NA, Monnin C, Moseley MA, Nandakumar R, Oresic M, Patterson R, Peake D, Pierce JS, Post M, Postle AD, Pugh R, Qiu Y, Quehenberger O, Ramrup P, Rees J, Rembiesa B, Reynaud D, Roth MR, Sales S, Schuhmann K, Schwartzman ML, Serhan CN, Shevchenko A, Somerville SE, St John-Williams L, Surma MA, Takeda H, Thakare R, Thompson JW, Torta F, Triebl A, Trötzmüller M, Ubhayasekera SJK, Vuckovic D, Weir JM, Welti R, Wenk MR, Wheelock CE, Yao L, Yuan M, Zhao XH, Zhou S.

J Lipid Res. 2017 Dec;58(12):2275-2288. doi: 10.1194/jlr.M079012. Epub 2017 Oct 6.

24.

Quantitative dot blot analysis (QDB), a versatile high throughput immunoblot method.

Tian G, Tang F, Yang C, Zhang W, Bergquist J, Wang B, Mi J, Zhang J.

Oncotarget. 2017 Apr 19;8(35):58553-58562. doi: 10.18632/oncotarget.17236. eCollection 2017 Aug 29.

25.

Medical Malpractice Lawsuits Involving Surgical Residents.

Thiels CA, Choudhry AJ, Ray-Zack MD, Lindor RA, Bergquist JR, Habermann EB, Zielinski MD.

JAMA Surg. 2018 Jan 1;153(1):8-13. doi: 10.1001/jamasurg.2017.2979.

26.

Incorporation of Treatment Response, Tumor Grade and Receptor Status Improves Staging Quality in Breast Cancer Patients Treated with Neoadjuvant Chemotherapy.

Bergquist JR, Murphy BL, Storlie CB, Habermann EB, Boughey JC.

Ann Surg Oncol. 2017 Nov;24(12):3510-3517. doi: 10.1245/s10434-017-6010-4. Epub 2017 Aug 21.

PMID:
28828583
27.

Scavenger Receptor A Mediates the Clearance and Immunological Screening of MDA-Modified Antigen by M2-Type Macrophages.

Warnecke A, Abele S, Musunuri S, Bergquist J, Harris RA.

Neuromolecular Med. 2017 Dec;19(4):463-479. doi: 10.1007/s12017-017-8461-y. Epub 2017 Aug 21.

28.

Maternal and female fetal testosterone levels are associated with maternal age and gestational weight gain.

Kallak TK, Hellgren C, Skalkidou A, Sandelin-Francke L, Ubhayasekhera K, Bergquist J, Axelsson O, Comasco E, Campbell RE, Sundström Poromaa I.

Eur J Endocrinol. 2017 Oct;177(4):379-388. doi: 10.1530/EJE-17-0207. Epub 2017 Jul 13.

29.

Neuropeptide imaging in rat spinal cord with MALDI-TOF MS: Method development for the application in pain-related disease studies.

Sui P, Watanabe H, Artemenko K, Sun W, Bakalkin G, Andersson M, Bergquist J.

Eur J Mass Spectrom (Chichester). 2017 Jun;23(3):105-115. doi: 10.1177/1469066717703272. Epub 2017 May 7.

PMID:
28657437
30.

Comparisons between commercial salivary testosterone enzyme-linked immunosorbent assay kits.

Andersson CR, Bergquist J, Theodorsson E, Ström JO.

Scand J Clin Lab Invest. 2017 Dec;77(8):582-586. doi: 10.1080/00365513.2017.1339231. Epub 2017 Jun 23.

PMID:
28644096
31.

Outcomes are Local: Patient, Disease, and Procedure-Specific Risk Factors for Colorectal Surgical Site Infections from a Single Institution.

Cima RR, Bergquist JR, Hanson KT, Thiels CA, Habermann EB.

J Gastrointest Surg. 2017 Jul;21(7):1142-1152. doi: 10.1007/s11605-017-3430-1. Epub 2017 May 3.

PMID:
28470562
32.

Combined lipidomic and proteomic analysis of isolated human islets exposed to palmitate reveals time-dependent changes in insulin secretion and lipid metabolism.

Roomp K, Kristinsson H, Schvartz D, Ubhayasekera K, Sargsyan E, Manukyan L, Chowdhury A, Manell H, Satagopam V, Groebe K, Schneider R, Bergquist J, Sanchez JC, Bergsten P.

PLoS One. 2017 Apr 27;12(4):e0176391. doi: 10.1371/journal.pone.0176391. eCollection 2017.

33.

Quantitative proteomic analysis of gastric cancer tissue reveals novel proteins in platelet-derived growth factor b signaling pathway.

Liu F, Zhang Y, Men T, Jiang X, Yang C, Li H, Wei X, Yan D, Feng G, Yang J, Bergquist J, Wang B, Jiang W, Mi J, Tian G.

Oncotarget. 2017 Mar 28;8(13):22059-22075. doi: 10.18632/oncotarget.15908.

34.

Preoperative Clostridium difficile Infection Does Not Affect Pouch Outcomes in Patients with Ulcerative Colitis Who Undergo Ileal Pouch-anal Anastomosis.

Lightner AL, Tse CS, Quinn K, Bergquist JR, Enders F, Pendegraft R, Khanna S, Raffals L.

Inflamm Bowel Dis. 2017 Jul;23(7):1195-1201. doi: 10.1097/MIB.0000000000001122.

PMID:
28410344
35.

Shotgun proteomic analysis to study the decrease of xenograft tumor growth after rosemary extract treatment.

Valdés A, García-Cañas V, Pérez-Sánchez A, Barrajón-Catalán E, Ruiz-Torres V, Artemenko KA, Micol V, Bergquist J, Cifuentes A.

J Chromatogr A. 2017 May 26;1499:90-100. doi: 10.1016/j.chroma.2017.03.072. Epub 2017 Mar 27.

PMID:
28389096
36.

Lower inflammatory markers in women with antenatal depression brings the M1/M2 balance into focus from a new direction.

Edvinsson Å, Bränn E, Hellgren C, Freyhult E, White R, Kamali-Moghaddam M, Olivier J, Bergquist J, Boström AE, Schiöth HB, Skalkidou A, Cunningham JL, Sundström-Poromaa I.

Psychoneuroendocrinology. 2017 Jun;80:15-25. doi: 10.1016/j.psyneuen.2017.02.027. Epub 2017 Feb 28.

PMID:
28292683
37.

Incorporation of CEA Improves Risk Stratification in Stage II Colon Cancer.

Spindler BA, Bergquist JR, Thiels CA, Habermann EB, Kelley SR, Larson DW, Mathis KL.

J Gastrointest Surg. 2017 May;21(5):770-777. doi: 10.1007/s11605-017-3391-4. Epub 2017 Mar 13.

PMID:
28290141
38.

Environmental exposures as a risk factor for fibrolamellar carcinoma.

Graham RP, Craig JR, Jin L, Oliveira AM, Bergquist JR, Truty MJ, Mounajjed T, Greipp PT, Torbenson MS.

Mod Pathol. 2017 Jun;30(6):892-896. doi: 10.1038/modpathol.2017.7. Epub 2017 Mar 3.

39.

QTL mapping of stress related gene expression in a cross between domesticated chickens and ancestral red junglefowl.

Fallahsharoudi A, de Kock N, Johnsson M, Bektic L, Ubhayasekera SJ, Bergquist J, Wright D, Jensen P.

Mol Cell Endocrinol. 2017 May 5;446:52-58. doi: 10.1016/j.mce.2017.02.010. Epub 2017 Feb 9.

40.

A versatile route to polythiophenes with functional pendant groups using alkyne chemistry.

Huang X, Yang L, Emanuelsson R, Bergquist J, Strømme M, Sjödin M, Gogoll A.

Beilstein J Org Chem. 2016 Dec 9;12:2682-2688. doi: 10.3762/bjoc.12.265. eCollection 2016.

41.

Patient Selection for Neoadjuvant Therapy in Early-Stage Pancreatic Cancer.

Bergquist JR, Shubert CR, Storlie CB, Habermann EB, Truty MJ.

J Clin Oncol. 2017 May 10;35(14):1622-1623. doi: 10.1200/JCO.2016.71.2315. Epub 2017 Jan 30. No abstract available.

PMID:
28135141
42.

Greater Mortality After Emergency Laparotomy in the United Kingdom Compared With United States: A Window Into the Quality of Acute Care Surgery in the United States.

Bergquist JR, Thiels CA, Hyder JA, Zielinski MD.

Ann Surg. 2018 Apr;267(4):e76-e78. doi: 10.1097/SLA.0000000000002156. No abstract available.

PMID:
28121678
43.

Outcomes of Primary Colorectal Sarcoma: A National Cancer Data Base (NCDB) Review.

Thiels CA, Bergquist JR, Krajewski AC, Lee HE, Nelson H, Mathis KL, Habermann EB, Cima RR.

J Gastrointest Surg. 2017 Mar;21(3):560-568. doi: 10.1007/s11605-016-3347-0. Epub 2017 Jan 17.

PMID:
28097468
44.

Type of Resection (Whipple vs. Distal) Does Not Affect the National Failure to Provide Post-resection Adjuvant Chemotherapy in Localized Pancreatic Cancer.

Bergquist JR, Ivanics T, Shubert CR, Habermann EB, Smoot RL, Kendrick ML, Nagorney DM, Farnell MB, Truty MJ.

Ann Surg Oncol. 2017 Jun;24(6):1731-1738. doi: 10.1245/s10434-016-5762-6. Epub 2017 Jan 9.

PMID:
28070725
45.

Differentiation of frogs from two populations belonging to the Pelophylax esculentus complex by LC-MS/MS comparison of their skin peptidomes.

Samgina TY, Artemenko KA, Bergquist J, Trebse P, Torkar G, Tolpina MD, Lebedev AT.

Anal Bioanal Chem. 2017 Mar;409(7):1951-1961. doi: 10.1007/s00216-016-0143-3. Epub 2016 Dec 23.

PMID:
28012108
46.

Nitration of MOG diminishes its encephalitogenicity depending on MHC haplotype.

Warnecke A, Musunuri S, N'diaye M, Sandalova T, Achour A, Bergquist J, Harris RA.

J Neuroimmunol. 2017 Feb 15;303:1-12. doi: 10.1016/j.jneuroim.2016.11.008. Epub 2016 Nov 26.

47.

Heavy metal concentrations in female wild mink (Neovison vison) in Sweden: Sources of variation and associations with internal organ weights.

Ljungvall K, Magnusson U, Korvela M, Norrby M, Bergquist J, Persson S.

Environ Toxicol Chem. 2017 Aug;36(8):2030-2035. doi: 10.1002/etc.3717. Epub 2017 Feb 6.

PMID:
28000953
48.

Clinical implications of repeated drug monitoring of imatinib in patients with metastatic gastrointestinal stromal tumour.

Hompland I, Bruland ØS, Ubhayasekhera K, Bergquist J, Boye K.

Clin Sarcoma Res. 2016 Dec 15;6:21. doi: 10.1186/s13569-016-0062-2. eCollection 2016.

49.

Genetic and Targeted eQTL Mapping Reveals Strong Candidate Genes Modulating the Stress Response During Chicken Domestication.

Fallahsharoudi A, de Kock N, Johnsson M, Bektic L, Ubhayasekera SJ, Bergquist J, Wright D, Jensen P.

G3 (Bethesda). 2017 Feb 9;7(2):497-504. doi: 10.1534/g3.116.037721.

50.

Pancreatic Fat Is Associated With Metabolic Syndrome and Visceral Fat but Not Beta-Cell Function or Body Mass Index in Pediatric Obesity.

Staaf J, Labmayr V, Paulmichl K, Manell H, Cen J, Ciba I, Dahlbom M, Roomp K, Anderwald CH, Meissnitzer M, Schneider R, Forslund A, Widhalm K, Bergquist J, Ahlström H, Bergsten P, Weghuber D, Kullberg J.

Pancreas. 2017 Mar;46(3):358-365. doi: 10.1097/MPA.0000000000000771.

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