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EACH (Excellence in Analytical Chemistry), an Erasmus Mundus Joint Programme: progress and success.

Leito I, Teearu A, Bobacka J, Randon J, Bergquist J.

Anal Bioanal Chem. 2019 Sep;411(23):5913-5921. doi: 10.1007/s00216-019-01988-8. No abstract available.


Inclusion of Plasma Prolactin Levels in Current Risk Prediction Models of Premenopausal and Postmenopausal Breast Cancer.

Gabrielson M, Ubhayasekera K, Ek B, Andersson Franko M, Eriksson M, Czene K, Bergquist J, Hall P.

JNCI Cancer Spectr. 2018 Dec 4;2(4):pky055. doi: 10.1093/jncics/pky055. eCollection 2018 Oct.


Effects of glucocorticoids on vitamin D3-metabolizing 24-hydroxylase (CYP24A1) in Saos-2 cells and primary human osteoblasts.

Zayny A, Almokhtar M, Wikvall K, Ljunggren Ö, Ubhayasekera K, Bergquist J, Kibar P, Norlin M.

Mol Cell Endocrinol. 2019 Oct 1;496:110525. doi: 10.1016/j.mce.2019.110525. Epub 2019 Jul 25.


Electrocardiographic Comparison of Dobutamine and BRUCE Cardiac Stress Testing With High Resolution Mapping in Experimental Models.

Zenger B, Good WW, Bergquist J, Tate JD, Sharma V, MacLeod RS.

Comput Cardiol (2010). 2018 Sep;45. doi: 10.22489/CinC.2018.305. Epub 2019 Jun 24.


Early-onset gastric cancer is a distinct disease with worrisome trends and oncogenic features.

Bergquist JR, Leiting JL, Habermann EB, Cleary SP, Kendrick ML, Smoot RL, Nagorney DM, Truty MJ, Grotz TE.

Surgery. 2019 Jul 19. pii: S0039-6060(19)30299-5. doi: 10.1016/j.surg.2019.04.036. [Epub ahead of print]


Hyperglucagonemia in youth is associated with high plasma free fatty acids, visceral adiposity, and impaired glucose tolerance.

Manell H, Kristinsson H, Kullberg J, Ubhayasekera SJK, Mörwald K, Staaf J, Cadamuro J, Zsoldos F, Göpel S, Sargsyan E, Ahlström H, Bergquist J, Weghuber D, Forslund A, Bergsten P.

Pediatr Diabetes. 2019 Jul 4. doi: 10.1111/pedi.12890. [Epub ahead of print]


3D printed modeling contributes to reconstruction of complex chest wall instability.

Bergquist JR, Morris JM, Matsumoto JM, Schiller HJ, Kim BD.

Trauma Case Rep. 2019 Jun 19;22:100218. doi: 10.1016/j.tcr.2019.100218. eCollection 2019 Aug.


Complexity of dissolved organic matter in the molecular size dimension: insights from coupled size exclusion chromatography electrospray ionisation mass spectrometry.

Hawkes JA, Sjöberg PJR, Bergquist J, Tranvik LJ.

Faraday Discuss. 2019 Aug 15;218(0):52-71. doi: 10.1039/c8fd00222c.


Survival and prognostic factors in patients with pancreatic squamous cell carcinoma.

Tella SH, Kommalapati A, Yadav S, Bergquist JR, Truty MJ, Durgin L, Ma WW, Cleary SP, McWilliams RR, Mahipal A.

Eur J Surg Oncol. 2019 Sep;45(9):1700-1705. doi: 10.1016/j.ejso.2019.05.011. Epub 2019 May 15.


Pregnancy and neonatal complications in women with polycystic ovary syndrome in relation to second-trimester anti-Müllerian hormone levels.

Valdimarsdottir R, Valgeirsdottir H, Wikström AK, Kallak TK, Elenis E, Axelsson O, Ubhayasekhera K, Bergquist J, Piltonen TT, Pigny P, Giacobini P, Poromaa IS.

Reprod Biomed Online. 2019 Jul;39(1):141-148. doi: 10.1016/j.rbmo.2019.02.004. Epub 2019 Feb 27.


Transcriptome and Proteome Profiling of Neural Induced Pluripotent Stem Cells from Individuals with Down Syndrome Disclose Dynamic Dysregulations of Key Pathways and Cellular Functions.

Sobol M, Klar J, Laan L, Shahsavani M, Schuster J, Annerén G, Konzer A, Mi J, Bergquist J, Nordlund J, Hoeber J, Huss M, Falk A, Dahl N.

Mol Neurobiol. 2019 Oct;56(10):7113-7127. doi: 10.1007/s12035-019-1585-3. Epub 2019 Apr 13.


Identification of prothymosin alpha (PTMA) as a biomarker for esophageal squamous cell carcinoma (ESCC) by label-free quantitative proteomics and Quantitative Dot Blot (QDB).

Zhu Y, Qi X, Yu C, Yu S, Zhang C, Zhang Y, Liu X, Xu Y, Yang C, Jiang W, Tian G, Li X, Bergquist J, Zhang J, Wang L, Mi J.

Clin Proteomics. 2019 Apr 5;16:12. doi: 10.1186/s12014-019-9232-6. eCollection 2019.


Rituximab Decreases Lymphoproliferative Tumor Formation in Hepatopancreaticobiliary and Gastrointestinal Cancer Patient-Derived Xenografts.

Leiting JL, Hernandez MC, Yang L, Bergquist JR, Ivanics T, Graham RP, Truty MJ.

Sci Rep. 2019 Apr 11;9(1):5901. doi: 10.1038/s41598-019-42470-w.


Application of triple quadrupole mass spectrometry for the characterization of antibody-drug conjugates.

Källsten M, Pijnappel M, Hartmann R, Lehmann F, Kovac L, Lind SB, Bergquist J.

Anal Bioanal Chem. 2019 May;411(12):2569-2576. doi: 10.1007/s00216-019-01699-0. Epub 2019 Mar 8.


Proteomic analysis of the aqueous humour in eyes with pseudoexfoliation syndrome.

Botling Taube A, Konzer A, Alm A, Bergquist J.

Br J Ophthalmol. 2019 Aug;103(8):1190-1194. doi: 10.1136/bjophthalmol-2017-310416. Epub 2019 Mar 6.


Patient-Derived Xenografts Can Be Reliably Generated from Patient Clinical Biopsy Specimens.

Hernandez MC, Bergquist JR, Leiting JL, Ivanics T, Yang L, Smoot RL, Nagorney DM, Truty MJ.

J Gastrointest Surg. 2019 Apr;23(4):818-824. doi: 10.1007/s11605-019-04109-z. Epub 2019 Feb 12.


Surgery and chemotherapy are associated with improved overall survival in anal adenocarcinoma: results of a national cohort study.

McKenna NP, Bergquist JR, Habermann EB, Chua HK, Kelley SR, Mathis KL.

Int J Colorectal Dis. 2019 Apr;34(4):607-612. doi: 10.1007/s00384-018-03232-8. Epub 2019 Jan 11.


Radiation Therapy for Retroperitoneal Sarcomas: Influences of Histology, Grade, and Size.

Leiting JL, Bergquist JR, Hernandez MC, Merrell KW, Folpe AL, Robinson SI, Nagorney DM, Truty MJ, Grotz TE.

Sarcoma. 2018 Dec 5;2018:7972389. doi: 10.1155/2018/7972389. eCollection 2018.


A Novel Targeted Analysis of Peripheral Steroids by Ultra-Performance Supercritical Fluid Chromatography Hyphenated to Tandem Mass Spectrometry.

de Kock N, Acharya SR, Ubhayasekera SJKA, Bergquist J.

Sci Rep. 2018 Nov 19;8(1):16993. doi: 10.1038/s41598-018-35007-0.


Proteomic approach for understanding milder neurotoxicity of Carfilzomib against Bortezomib.

Karademir B, Sari G, Jannuzzi AT, Musunuri S, Wicher G, Grune T, Mi J, Hacioglu-Bay H, Forsberg-Nilsson K, Bergquist J, Jung T.

Sci Rep. 2018 Nov 5;8(1):16318. doi: 10.1038/s41598-018-34507-3.


Regional diversity of complex dissolved organic matter across forested hemiboreal headwater streams.

Hawkes JA, Radoman N, Bergquist J, Wallin MB, Tranvik LJ, Löfgren S.

Sci Rep. 2018 Oct 30;8(1):16060. doi: 10.1038/s41598-018-34272-3.


Qualitative analysis of antibody-drug conjugates (ADCs): an experimental comparison of analytical techniques of cysteine-linked ADCs.

Källsten M, Hartmann R, Artemenko K, Lind SB, Lehmann F, Bergquist J.

Analyst. 2018 Nov 5;143(22):5487-5496. doi: 10.1039/c8an01178h.


Successful Secondary Engraftment of Pancreatic Ductal Adenocarcinoma and Cholangiocarcinoma Patient-Derived Xenografts After Previous Failed Primary Engraftment.

Hernandez MC, Yang L, Leiting JL, Sugihara T, Bergquist JR, Ivanics T, Graham R, Truty MJ.

Transl Oncol. 2019 Jan;12(1):69-75. doi: 10.1016/j.tranon.2018.09.008. Epub 2018 Sep 28.


Early Diuresis After Colon and Rectal Surgery Does Not Reduce Length of Hospital Stay: Results of a Randomized Trial.

Danelich IM, Bergquist JR, Bergquist WJ, Osborn JL, Wright SS, Tefft BJ, Sturm AW, Langworthy DR, Mandrekar J, Devine RM, Kelley SR, Mathis KL, Pemberton JH, Jacob AK, Larson DW.

Dis Colon Rectum. 2018 Oct;61(10):1187-1195. doi: 10.1097/DCR.0000000000001183.


Acute sleep loss results in tissue-specific alterations in genome-wide DNA methylation state and metabolic fuel utilization in humans.

Cedernaes J, Schönke M, Westholm JO, Mi J, Chibalin A, Voisin S, Osler M, Vogel H, Hörnaeus K, Dickson SL, Lind SB, Bergquist J, Schiöth HB, Zierath JR, Benedict C.

Sci Adv. 2018 Aug 22;4(8):eaar8590. doi: 10.1126/sciadv.aar8590. eCollection 2018 Aug.


A novel, fast and sensitive supercritical fluid chromatography-tandem mass spectrometry (SFC-MS/MS) method for analysis of arachidonic acid metabolites.

Kumari A Ubhayasekera SJ, Acharya SR, Bergquist J.

Analyst. 2018 Jul 23;143(15):3661-3669. doi: 10.1039/c8an00788h.


Quantitative Proteomics of TRAMP Mice Combined with Bioinformatics Analysis Reveals That PDGF-B Regulatory Network Plays a Key Role in Prostate Cancer Progression.

Zhang Y, Wang D, Li M, Wei X, Liu S, Zhao M, Liu C, Wang X, Jiang X, Li X, Zhang S, Bergquist J, Wang B, Yang C, Mi J, Tian G.

J Proteome Res. 2018 Jul 6;17(7):2401-2411. doi: 10.1021/acs.jproteome.8b00158. Epub 2018 Jun 14.


The proteome of perilymph in patients with vestibular schwannoma. A possibility to identify biomarkers for tumor associated hearing loss?

Edvardsson Rasmussen J, Laurell G, Rask-Andersen H, Bergquist J, Eriksson PO.

PLoS One. 2018 Jun 1;13(6):e0198442. doi: 10.1371/journal.pone.0198442. eCollection 2018.


Proteomic differences between focal and diffuse traumatic brain injury in human brain tissue.

Abu Hamdeh S, Shevchenko G, Mi J, Musunuri S, Bergquist J, Marklund N.

Sci Rep. 2018 May 1;8(1):6807. doi: 10.1038/s41598-018-25060-0.


Analytical chemistry for a sustainable society - trends and implications.

Bergquist J, Turner C.

Anal Bioanal Chem. 2018 May;410(14):3235-3237. doi: 10.1007/s00216-018-1036-4. No abstract available.


PDLIM5 identified by label-free quantitative proteomics as a potential novel biomarker of papillary thyroid carcinoma.

Wei X, Zhang Y, Yu S, Li S, Jiang W, Zhu Y, Xu Y, Yang C, Tian G, Mi J, Bergquist J, Zhao M, Song F.

Biochem Biophys Res Commun. 2018 May 5;499(2):338-344. doi: 10.1016/j.bbrc.2018.03.159. Epub 2018 Mar 24.


Patient-derived xenograft cryopreservation and reanimation outcomes are dependent on cryoprotectant type.

Ivanics T, Bergquist JR, Liu G, Kim MP, Kang Y, Katz MH, Perez MVR, Thomas RM, Fleming JB, Truty MJ.

Lab Invest. 2018 Jul;98(7):947-956. doi: 10.1038/s41374-018-0042-7. Epub 2018 Mar 8.


Adjuvant systemic therapy after resection of node positive gallbladder cancer: Time for a well-designed trial? (Results of a US-national retrospective cohort study).

Bergquist JR, Shah HN, Habermann EB, Hernandez MC, Ivanics T, Kendrick ML, Smoot RL, Nagorney DM, Borad MJ, McWilliams RR, Truty MJ.

Int J Surg. 2018 Apr;52:171-179. doi: 10.1016/j.ijsu.2018.02.052. Epub 2018 Feb 26.


Online HPLC-ESI-HRMS Method for the Analysis and Comparison of Different Dissolved Organic Matter Samples.

Patriarca C, Bergquist J, Sjöberg PJR, Tranvik L, Hawkes JA.

Environ Sci Technol. 2018 Feb 20;52(4):2091-2099. doi: 10.1021/acs.est.7b04508. Epub 2018 Jan 4.


Characterization of the Giardia intestinalis secretome during interaction with human intestinal epithelial cells: The impact on host cells.

Ma'ayeh SY, Liu J, Peirasmaki D, Hörnaeus K, Bergström Lind S, Grabherr M, Bergquist J, Svärd SG.

PLoS Negl Trop Dis. 2017 Dec 11;11(12):e0006120. doi: 10.1371/journal.pntd.0006120. eCollection 2017 Dec.


Analytical techniques for the characterization of Antibody Drug Conjugates: Challenges and prospects.

Neupane R, Bergquist J.

Eur J Mass Spectrom (Chichester). 2017 Dec;23(6):417-426. doi: 10.1177/1469066717733919. Epub 2017 Sep 28. Review.


Small GTPase ARF6 controls VEGFR2 trafficking and signaling in diabetic retinopathy.

Zhu W, Shi DS, Winter JM, Rich BE, Tong Z, Sorensen LK, Zhao H, Huang Y, Tai Z, Mleynek TM, Yoo JH, Dunn C, Ling J, Bergquist JA, Richards JR, Jiang A, Lesniewski LA, Hartnett ME, Ward DM, Mueller AL, Ostanin K, Thomas KR, Odelberg SJ, Li DY.

J Clin Invest. 2017 Dec 1;127(12):4569-4582. doi: 10.1172/JCI91770. Epub 2017 Oct 23.


Harmonizing lipidomics: NIST interlaboratory comparison exercise for lipidomics using SRM 1950-Metabolites in Frozen Human Plasma.

Bowden JA, Heckert A, Ulmer CZ, Jones CM, Koelmel JP, Abdullah L, Ahonen L, Alnouti Y, Armando AM, Asara JM, Bamba T, Barr JR, Bergquist J, Borchers CH, Brandsma J, Breitkopf SB, Cajka T, Cazenave-Gassiot A, Checa A, Cinel MA, Colas RA, Cremers S, Dennis EA, Evans JE, Fauland A, Fiehn O, Gardner MS, Garrett TJ, Gotlinger KH, Han J, Huang Y, Neo AH, Hyötyläinen T, Izumi Y, Jiang H, Jiang H, Jiang J, Kachman M, Kiyonami R, Klavins K, Klose C, Köfeler HC, Kolmert J, Koal T, Koster G, Kuklenyik Z, Kurland IJ, Leadley M, Lin K, Maddipati KR, McDougall D, Meikle PJ, Mellett NA, Monnin C, Moseley MA, Nandakumar R, Oresic M, Patterson R, Peake D, Pierce JS, Post M, Postle AD, Pugh R, Qiu Y, Quehenberger O, Ramrup P, Rees J, Rembiesa B, Reynaud D, Roth MR, Sales S, Schuhmann K, Schwartzman ML, Serhan CN, Shevchenko A, Somerville SE, St John-Williams L, Surma MA, Takeda H, Thakare R, Thompson JW, Torta F, Triebl A, Trötzmüller M, Ubhayasekera SJK, Vuckovic D, Weir JM, Welti R, Wenk MR, Wheelock CE, Yao L, Yuan M, Zhao XH, Zhou S.

J Lipid Res. 2017 Dec;58(12):2275-2288. doi: 10.1194/jlr.M079012. Epub 2017 Oct 6.


Quantitative dot blot analysis (QDB), a versatile high throughput immunoblot method.

Tian G, Tang F, Yang C, Zhang W, Bergquist J, Wang B, Mi J, Zhang J.

Oncotarget. 2017 Apr 19;8(35):58553-58562. doi: 10.18632/oncotarget.17236. eCollection 2017 Aug 29.


Medical Malpractice Lawsuits Involving Surgical Residents.

Thiels CA, Choudhry AJ, Ray-Zack MD, Lindor RA, Bergquist JR, Habermann EB, Zielinski MD.

JAMA Surg. 2018 Jan 1;153(1):8-13. doi: 10.1001/jamasurg.2017.2979.


Incorporation of Treatment Response, Tumor Grade and Receptor Status Improves Staging Quality in Breast Cancer Patients Treated with Neoadjuvant Chemotherapy.

Bergquist JR, Murphy BL, Storlie CB, Habermann EB, Boughey JC.

Ann Surg Oncol. 2017 Nov;24(12):3510-3517. doi: 10.1245/s10434-017-6010-4. Epub 2017 Aug 21.


Scavenger Receptor A Mediates the Clearance and Immunological Screening of MDA-Modified Antigen by M2-Type Macrophages.

Warnecke A, Abele S, Musunuri S, Bergquist J, Harris RA.

Neuromolecular Med. 2017 Dec;19(4):463-479. doi: 10.1007/s12017-017-8461-y. Epub 2017 Aug 21.


Maternal and female fetal testosterone levels are associated with maternal age and gestational weight gain.

Kallak TK, Hellgren C, Skalkidou A, Sandelin-Francke L, Ubhayasekhera K, Bergquist J, Axelsson O, Comasco E, Campbell RE, Sundström Poromaa I.

Eur J Endocrinol. 2017 Oct;177(4):379-388. doi: 10.1530/EJE-17-0207. Epub 2017 Jul 13.


Neuropeptide imaging in rat spinal cord with MALDI-TOF MS: Method development for the application in pain-related disease studies.

Sui P, Watanabe H, Artemenko K, Sun W, Bakalkin G, Andersson M, Bergquist J.

Eur J Mass Spectrom (Chichester). 2017 Jun;23(3):105-115. doi: 10.1177/1469066717703272. Epub 2017 May 7.


Comparisons between commercial salivary testosterone enzyme-linked immunosorbent assay kits.

Andersson CR, Bergquist J, Theodorsson E, Ström JO.

Scand J Clin Lab Invest. 2017 Dec;77(8):582-586. doi: 10.1080/00365513.2017.1339231. Epub 2017 Jun 23.


Outcomes are Local: Patient, Disease, and Procedure-Specific Risk Factors for Colorectal Surgical Site Infections from a Single Institution.

Cima RR, Bergquist JR, Hanson KT, Thiels CA, Habermann EB.

J Gastrointest Surg. 2017 Jul;21(7):1142-1152. doi: 10.1007/s11605-017-3430-1. Epub 2017 May 3.


Combined lipidomic and proteomic analysis of isolated human islets exposed to palmitate reveals time-dependent changes in insulin secretion and lipid metabolism.

Roomp K, Kristinsson H, Schvartz D, Ubhayasekera K, Sargsyan E, Manukyan L, Chowdhury A, Manell H, Satagopam V, Groebe K, Schneider R, Bergquist J, Sanchez JC, Bergsten P.

PLoS One. 2017 Apr 27;12(4):e0176391. doi: 10.1371/journal.pone.0176391. eCollection 2017.


Quantitative proteomic analysis of gastric cancer tissue reveals novel proteins in platelet-derived growth factor b signaling pathway.

Liu F, Zhang Y, Men T, Jiang X, Yang C, Li H, Wei X, Yan D, Feng G, Yang J, Bergquist J, Wang B, Jiang W, Mi J, Tian G.

Oncotarget. 2017 Mar 28;8(13):22059-22075. doi: 10.18632/oncotarget.15908.


Preoperative Clostridium difficile Infection Does Not Affect Pouch Outcomes in Patients with Ulcerative Colitis Who Undergo Ileal Pouch-anal Anastomosis.

Lightner AL, Tse CS, Quinn K, Bergquist JR, Enders F, Pendegraft R, Khanna S, Raffals L.

Inflamm Bowel Dis. 2017 Jul;23(7):1195-1201. doi: 10.1097/MIB.0000000000001122.


Shotgun proteomic analysis to study the decrease of xenograft tumor growth after rosemary extract treatment.

Valdés A, García-Cañas V, Pérez-Sánchez A, Barrajón-Catalán E, Ruiz-Torres V, Artemenko KA, Micol V, Bergquist J, Cifuentes A.

J Chromatogr A. 2017 May 26;1499:90-100. doi: 10.1016/j.chroma.2017.03.072. Epub 2017 Mar 27.


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