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A Unified Pipeline for ECG Imaging Testing.

Tate J, van Dam E, Good W, Bergquist J, van Dam P, MacLeod R.

Comput Cardiol (2010). 2019 Sep;46. doi: 10.22489/cinc.2019.437. Epub 2020 Feb 24.


Questionable Survival Benefit of Aspirin Use in Patients With Biliary Tract Cancer.

Bergquist JR, Shariq OA, Visser BC.

JAMA Oncol. 2020 Mar 19. doi: 10.1001/jamaoncol.2020.0122. [Epub ahead of print] No abstract available.


Experimental Validation of Image-Based Modeling of Torso Surface Potentials During Acute Myocardial Ischemia.

Zenger B, Bergquist JA, Good WW, Burton BM, Tate JD, MacLeod RS.

Comput Cardiol (2010). 2019 Sep;46. doi: 10.22489/cinc.2019.417. Epub 2020 Feb 24.


HSP70 Inhibition Leads to the Activation of Proteasomal System under Mild Hyperthermia Conditions in Young and Senescent Fibroblasts.

Bozaykut P, Sozen E, Kaga E, Ece A, Ozaltin E, Bergquist J, Kartal Ozer N, Karademir Yilmaz B.

Oxid Med Cell Longev. 2020 Feb 27;2020:9369524. doi: 10.1155/2020/9369524. eCollection 2020.


Biliary tract cancer patient-derived xenografts: Surgeon impact on individualized medicine.

Leiting JL, Murphy SJ, Bergquist JR, Hernandez MC, Ivanics T, Abdelrahman AM, Yang L, Lynch I, Smadbeck JB, Cleary SP, Nagorney DM, Torbenson MS, Graham RP, Roberts LR, Gores GJ, Smoot RL, Truty MJ.

JHEP Rep. 2020 Jan 16;2(2):100068. doi: 10.1016/j.jhepr.2020.100068. eCollection 2020 Apr.


Novel staging system using carbohydrate antigen (CA) 19-9 in extra-hepatic cholangiocarcinoma and its implications on overall survival.

Tella SH, Kommalapati A, Yadav S, Bergquist JR, Goyal G, Durgin L, Borad M, Cleary SP, Truty MJ, Mahipal A.

Eur J Surg Oncol. 2020 Jan 11. pii: S0748-7983(20)30020-2. doi: 10.1016/j.ejso.2020.01.016. [Epub ahead of print]


Inclusion of Endogenous Plasma Dehydroepiandrosterone Sulfate and Mammographic Density in Risk Prediction Models for Breast Cancer.

Gabrielson M, Ubhayasekera KA, Acharya SR, Franko MA, Eriksson M, Bergquist J, Czene K, Hall P.

Cancer Epidemiol Biomarkers Prev. 2020 Mar;29(3):574-581. doi: 10.1158/1055-9965.EPI-19-1120. Epub 2020 Jan 16.


Novel experimental model for studying the spatiotemporal electrical signature of acute myocardial ischemia: a translational platform.

Zenger B, Good WW, Bergquist JA, Burton BM, Tate JD, Berkenbile L, Sharma V, MacLeod RS.

Physiol Meas. 2020 Feb 5;41(1):015002. doi: 10.1088/1361-6579/ab64b9.


The polyamine transporter Slc18b1(VPAT) is important for both short and long time memory and for regulation of polyamine content in the brain.

Fredriksson R, Sreedharan S, Nordenankar K, Alsiö J, Lindberg FA, Hutchinson A, Eriksson A, Roshanbin S, Ciuculete DM, Klockars A, Todkar A, Hägglund MG, Hellsten SV, Hindlycke V, Västermark Å, Shevchenko G, Olivo G, K C, Kullander K, Moazzami A, Bergquist J, Olszewski PK, Schiöth HB.

PLoS Genet. 2019 Dec 4;15(12):e1008455. doi: 10.1371/journal.pgen.1008455. eCollection 2019 Dec.


Chaperone co-inducer BGP-15 mitigates early contractile dysfunction of the soleus muscle in a rat ICU model.

Cacciani N, Salah H, Li M, Akkad H, Backeus A, Hedstrom Y, Jena BP, Bergquist J, Larsson L.

Acta Physiol (Oxf). 2019 Dec 4:e13425. doi: 10.1111/apha.13425. [Epub ahead of print]


GRÖMeR: A Pipeline for Geodesic Refinement of Mesh Registration.

Bergquist JA, Good WW, Zenger B, Tate JD, MacLeod RS.

Funct Imaging Model Heart. 2019 Jun;11504:37-45. doi: 10.1007/978-3-030-21949-9_5. Epub 2019 May 30.


Acute effects of methcathinone and manganese in mice: A dose response study.

Asser A, Kõks S, Soomets U, Terasmaa A, Sauk M, Eltermaa M, Piip P, Ubhayasekera K, Bergquist J, Taba P.

Heliyon. 2019 Sep 20;5(9):e02475. doi: 10.1016/j.heliyon.2019.e02475. eCollection 2019 Sep.


Astrocyte-microglial association and matrix composition are common events in the natural history of primary familial brain calcification.

Nahar K, Lebouvier T, Andaloussi Mäe M, Konzer A, Bergquist J, Zarb Y, Johansson B, Betsholtz C, Vanlandewijck M.

Brain Pathol. 2019 Sep 27. doi: 10.1111/bpa.12787. [Epub ahead of print]


EACH (Excellence in Analytical Chemistry), an Erasmus Mundus Joint Programme: progress and success.

Leito I, Teearu A, Bobacka J, Randon J, Bergquist J.

Anal Bioanal Chem. 2019 Sep;411(23):5913-5921. doi: 10.1007/s00216-019-01988-8. No abstract available.


Inclusion of Plasma Prolactin Levels in Current Risk Prediction Models of Premenopausal and Postmenopausal Breast Cancer.

Gabrielson M, Ubhayasekera K, Ek B, Andersson Franko M, Eriksson M, Czene K, Bergquist J, Hall P.

JNCI Cancer Spectr. 2018 Dec 4;2(4):pky055. doi: 10.1093/jncics/pky055. eCollection 2018 Oct.


Effects of glucocorticoids on vitamin D3-metabolizing 24-hydroxylase (CYP24A1) in Saos-2 cells and primary human osteoblasts.

Zayny A, Almokhtar M, Wikvall K, Ljunggren Ö, Ubhayasekera K, Bergquist J, Kibar P, Norlin M.

Mol Cell Endocrinol. 2019 Oct 1;496:110525. doi: 10.1016/j.mce.2019.110525. Epub 2019 Jul 25.


Electrocardiographic Comparison of Dobutamine and BRUCE Cardiac Stress Testing With High Resolution Mapping in Experimental Models.

Zenger B, Good WW, Bergquist J, Tate JD, Sharma V, MacLeod RS.

Comput Cardiol (2010). 2018 Sep;45. doi: 10.22489/CinC.2018.305. Epub 2019 Jun 24.


Early-onset gastric cancer is a distinct disease with worrisome trends and oncogenic features.

Bergquist JR, Leiting JL, Habermann EB, Cleary SP, Kendrick ML, Smoot RL, Nagorney DM, Truty MJ, Grotz TE.

Surgery. 2019 Oct;166(4):547-555. doi: 10.1016/j.surg.2019.04.036. Epub 2019 Jul 20.


Hyperglucagonemia in youth is associated with high plasma free fatty acids, visceral adiposity, and impaired glucose tolerance.

Manell H, Kristinsson H, Kullberg J, Ubhayasekera SJK, Mörwald K, Staaf J, Cadamuro J, Zsoldos F, Göpel S, Sargsyan E, Ahlström H, Bergquist J, Weghuber D, Forslund A, Bergsten P.

Pediatr Diabetes. 2019 Nov;20(7):880-891. doi: 10.1111/pedi.12890. Epub 2019 Jul 17.


3D printed modeling contributes to reconstruction of complex chest wall instability.

Bergquist JR, Morris JM, Matsumoto JM, Schiller HJ, Kim BD.

Trauma Case Rep. 2019 Jun 19;22:100218. doi: 10.1016/j.tcr.2019.100218. eCollection 2019 Aug.


Complexity of dissolved organic matter in the molecular size dimension: insights from coupled size exclusion chromatography electrospray ionisation mass spectrometry.

Hawkes JA, Sjöberg PJR, Bergquist J, Tranvik LJ.

Faraday Discuss. 2019 Aug 15;218(0):52-71. doi: 10.1039/c8fd00222c.


Survival and prognostic factors in patients with pancreatic squamous cell carcinoma.

Tella SH, Kommalapati A, Yadav S, Bergquist JR, Truty MJ, Durgin L, Ma WW, Cleary SP, McWilliams RR, Mahipal A.

Eur J Surg Oncol. 2019 Sep;45(9):1700-1705. doi: 10.1016/j.ejso.2019.05.011. Epub 2019 May 15.


Pregnancy and neonatal complications in women with polycystic ovary syndrome in relation to second-trimester anti-Müllerian hormone levels.

Valdimarsdottir R, Valgeirsdottir H, Wikström AK, Kallak TK, Elenis E, Axelsson O, Ubhayasekhera K, Bergquist J, Piltonen TT, Pigny P, Giacobini P, Poromaa IS.

Reprod Biomed Online. 2019 Jul;39(1):141-148. doi: 10.1016/j.rbmo.2019.02.004. Epub 2019 Feb 27.


Transcriptome and Proteome Profiling of Neural Induced Pluripotent Stem Cells from Individuals with Down Syndrome Disclose Dynamic Dysregulations of Key Pathways and Cellular Functions.

Sobol M, Klar J, Laan L, Shahsavani M, Schuster J, Annerén G, Konzer A, Mi J, Bergquist J, Nordlund J, Hoeber J, Huss M, Falk A, Dahl N.

Mol Neurobiol. 2019 Oct;56(10):7113-7127. doi: 10.1007/s12035-019-1585-3. Epub 2019 Apr 13.


Identification of prothymosin alpha (PTMA) as a biomarker for esophageal squamous cell carcinoma (ESCC) by label-free quantitative proteomics and Quantitative Dot Blot (QDB).

Zhu Y, Qi X, Yu C, Yu S, Zhang C, Zhang Y, Liu X, Xu Y, Yang C, Jiang W, Tian G, Li X, Bergquist J, Zhang J, Wang L, Mi J.

Clin Proteomics. 2019 Apr 5;16:12. doi: 10.1186/s12014-019-9232-6. eCollection 2019.


Rituximab Decreases Lymphoproliferative Tumor Formation in Hepatopancreaticobiliary and Gastrointestinal Cancer Patient-Derived Xenografts.

Leiting JL, Hernandez MC, Yang L, Bergquist JR, Ivanics T, Graham RP, Truty MJ.

Sci Rep. 2019 Apr 11;9(1):5901. doi: 10.1038/s41598-019-42470-w.


Application of triple quadrupole mass spectrometry for the characterization of antibody-drug conjugates.

Källsten M, Pijnappel M, Hartmann R, Lehmann F, Kovac L, Lind SB, Bergquist J.

Anal Bioanal Chem. 2019 May;411(12):2569-2576. doi: 10.1007/s00216-019-01699-0. Epub 2019 Mar 8.


Proteomic analysis of the aqueous humour in eyes with pseudoexfoliation syndrome.

Botling Taube A, Konzer A, Alm A, Bergquist J.

Br J Ophthalmol. 2019 Aug;103(8):1190-1194. doi: 10.1136/bjophthalmol-2017-310416. Epub 2019 Mar 6.


Patient-Derived Xenografts Can Be Reliably Generated from Patient Clinical Biopsy Specimens.

Hernandez MC, Bergquist JR, Leiting JL, Ivanics T, Yang L, Smoot RL, Nagorney DM, Truty MJ.

J Gastrointest Surg. 2019 Apr;23(4):818-824. doi: 10.1007/s11605-019-04109-z. Epub 2019 Feb 12.


Surgery and chemotherapy are associated with improved overall survival in anal adenocarcinoma: results of a national cohort study.

McKenna NP, Bergquist JR, Habermann EB, Chua HK, Kelley SR, Mathis KL.

Int J Colorectal Dis. 2019 Apr;34(4):607-612. doi: 10.1007/s00384-018-03232-8. Epub 2019 Jan 11.


Radiation Therapy for Retroperitoneal Sarcomas: Influences of Histology, Grade, and Size.

Leiting JL, Bergquist JR, Hernandez MC, Merrell KW, Folpe AL, Robinson SI, Nagorney DM, Truty MJ, Grotz TE.

Sarcoma. 2018 Dec 5;2018:7972389. doi: 10.1155/2018/7972389. eCollection 2018.


Optimizing the Reconstruction of Cardiac Potentials Using a Novel High Resolution Pericardiac Cage.

Bergquist JA, Good WW, Zenger B, Tate JD, MacLeod RS.

Comput Cardiol (2010). 2019;46. doi: 10.22489/cinc.2019.441. Epub 2020 Feb 24.


Validation of Intramural Wavefront Reconstruction and Estimation of 3D Conduction Velocity.

Good WW, Gillette KK, Bergquist JA, Zenger B, Tate J, Rupp LC, Anderson D, Plank G, MacLeod RS.

Comput Cardiol (2010). 2019;46. doi: 10.22489/cinc.2019.420. Epub 2020 Feb 24.


Effects of Interpolation on the Inverse Problem of Electrocardiography.

Dogrusoz YS, Bear LR, Bergquist J, Dubois R, Good W, MacLeod RS, Rababah A, Stoks J.

Comput Cardiol (2010). 2019;46. doi: 10.22489/cinc.2019.100. Epub 2020 Feb 24.


A Novel Targeted Analysis of Peripheral Steroids by Ultra-Performance Supercritical Fluid Chromatography Hyphenated to Tandem Mass Spectrometry.

de Kock N, Acharya SR, Ubhayasekera SJKA, Bergquist J.

Sci Rep. 2018 Nov 19;8(1):16993. doi: 10.1038/s41598-018-35007-0.


Proteomic approach for understanding milder neurotoxicity of Carfilzomib against Bortezomib.

Karademir B, Sari G, Jannuzzi AT, Musunuri S, Wicher G, Grune T, Mi J, Hacioglu-Bay H, Forsberg-Nilsson K, Bergquist J, Jung T.

Sci Rep. 2018 Nov 5;8(1):16318. doi: 10.1038/s41598-018-34507-3.


Regional diversity of complex dissolved organic matter across forested hemiboreal headwater streams.

Hawkes JA, Radoman N, Bergquist J, Wallin MB, Tranvik LJ, Löfgren S.

Sci Rep. 2018 Oct 30;8(1):16060. doi: 10.1038/s41598-018-34272-3.


Qualitative analysis of antibody-drug conjugates (ADCs): an experimental comparison of analytical techniques of cysteine-linked ADCs.

Källsten M, Hartmann R, Artemenko K, Lind SB, Lehmann F, Bergquist J.

Analyst. 2018 Nov 5;143(22):5487-5496. doi: 10.1039/c8an01178h.


Successful Secondary Engraftment of Pancreatic Ductal Adenocarcinoma and Cholangiocarcinoma Patient-Derived Xenografts After Previous Failed Primary Engraftment.

Hernandez MC, Yang L, Leiting JL, Sugihara T, Bergquist JR, Ivanics T, Graham R, Truty MJ.

Transl Oncol. 2019 Jan;12(1):69-75. doi: 10.1016/j.tranon.2018.09.008. Epub 2018 Sep 28.


Early Diuresis After Colon and Rectal Surgery Does Not Reduce Length of Hospital Stay: Results of a Randomized Trial.

Danelich IM, Bergquist JR, Bergquist WJ, Osborn JL, Wright SS, Tefft BJ, Sturm AW, Langworthy DR, Mandrekar J, Devine RM, Kelley SR, Mathis KL, Pemberton JH, Jacob AK, Larson DW.

Dis Colon Rectum. 2018 Oct;61(10):1187-1195. doi: 10.1097/DCR.0000000000001183.


Acute sleep loss results in tissue-specific alterations in genome-wide DNA methylation state and metabolic fuel utilization in humans.

Cedernaes J, Schönke M, Westholm JO, Mi J, Chibalin A, Voisin S, Osler M, Vogel H, Hörnaeus K, Dickson SL, Lind SB, Bergquist J, Schiöth HB, Zierath JR, Benedict C.

Sci Adv. 2018 Aug 22;4(8):eaar8590. doi: 10.1126/sciadv.aar8590. eCollection 2018 Aug.


A novel, fast and sensitive supercritical fluid chromatography-tandem mass spectrometry (SFC-MS/MS) method for analysis of arachidonic acid metabolites.

Kumari A Ubhayasekera SJ, Acharya SR, Bergquist J.

Analyst. 2018 Jul 23;143(15):3661-3669. doi: 10.1039/c8an00788h.


Quantitative Proteomics of TRAMP Mice Combined with Bioinformatics Analysis Reveals That PDGF-B Regulatory Network Plays a Key Role in Prostate Cancer Progression.

Zhang Y, Wang D, Li M, Wei X, Liu S, Zhao M, Liu C, Wang X, Jiang X, Li X, Zhang S, Bergquist J, Wang B, Yang C, Mi J, Tian G.

J Proteome Res. 2018 Jul 6;17(7):2401-2411. doi: 10.1021/acs.jproteome.8b00158. Epub 2018 Jun 14.


The proteome of perilymph in patients with vestibular schwannoma. A possibility to identify biomarkers for tumor associated hearing loss?

Edvardsson Rasmussen J, Laurell G, Rask-Andersen H, Bergquist J, Eriksson PO.

PLoS One. 2018 Jun 1;13(6):e0198442. doi: 10.1371/journal.pone.0198442. eCollection 2018.


Proteomic differences between focal and diffuse traumatic brain injury in human brain tissue.

Abu Hamdeh S, Shevchenko G, Mi J, Musunuri S, Bergquist J, Marklund N.

Sci Rep. 2018 May 1;8(1):6807. doi: 10.1038/s41598-018-25060-0.


Analytical chemistry for a sustainable society - trends and implications.

Bergquist J, Turner C.

Anal Bioanal Chem. 2018 May;410(14):3235-3237. doi: 10.1007/s00216-018-1036-4. No abstract available.


PDLIM5 identified by label-free quantitative proteomics as a potential novel biomarker of papillary thyroid carcinoma.

Wei X, Zhang Y, Yu S, Li S, Jiang W, Zhu Y, Xu Y, Yang C, Tian G, Mi J, Bergquist J, Zhao M, Song F.

Biochem Biophys Res Commun. 2018 May 5;499(2):338-344. doi: 10.1016/j.bbrc.2018.03.159. Epub 2018 Mar 24.


Patient-derived xenograft cryopreservation and reanimation outcomes are dependent on cryoprotectant type.

Ivanics T, Bergquist JR, Liu G, Kim MP, Kang Y, Katz MH, Perez MVR, Thomas RM, Fleming JB, Truty MJ.

Lab Invest. 2018 Jul;98(7):947-956. doi: 10.1038/s41374-018-0042-7. Epub 2018 Mar 8.


Adjuvant systemic therapy after resection of node positive gallbladder cancer: Time for a well-designed trial? (Results of a US-national retrospective cohort study).

Bergquist JR, Shah HN, Habermann EB, Hernandez MC, Ivanics T, Kendrick ML, Smoot RL, Nagorney DM, Borad MJ, McWilliams RR, Truty MJ.

Int J Surg. 2018 Apr;52:171-179. doi: 10.1016/j.ijsu.2018.02.052. Epub 2018 Feb 26.


Online HPLC-ESI-HRMS Method for the Analysis and Comparison of Different Dissolved Organic Matter Samples.

Patriarca C, Bergquist J, Sjöberg PJR, Tranvik L, Hawkes JA.

Environ Sci Technol. 2018 Feb 20;52(4):2091-2099. doi: 10.1021/acs.est.7b04508. Epub 2018 Jan 4.


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