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Items: 10

1.

Hydrogenotrophic methanogenesis in archaeal phylum Verstraetearchaeota reveals the shared ancestry of all methanogens.

Berghuis BA, Yu FB, Schulz F, Blainey PC, Woyke T, Quake SR.

Proc Natl Acad Sci U S A. 2019 Mar 12;116(11):5037-5044. doi: 10.1073/pnas.1815631116. Epub 2019 Feb 27.

2.

What is all this fuss about Tus? Comparison of recent findings from biophysical and biochemical experiments.

Berghuis BA, Raducanu VS, Elshenawy MM, Jergic S, Depken M, Dixon NE, Hamdan SM, Dekker NH.

Crit Rev Biochem Mol Biol. 2018 Feb;53(1):49-63. doi: 10.1080/10409238.2017.1394264. Epub 2017 Nov 6. Review.

PMID:
29108427
3.

High-throughput, high-force probing of DNA-protein interactions with magnetic tweezers.

Berghuis BA, Köber M, van Laar T, Dekker NH.

Methods. 2016 Aug 1;105:90-8. doi: 10.1016/j.ymeth.2016.03.025. Epub 2016 Mar 30.

4.

Backtracking behavior in viral RNA-dependent RNA polymerase provides the basis for a second initiation site.

Dulin D, Vilfan ID, Berghuis BA, Poranen MM, Depken M, Dekker NH.

Nucleic Acids Res. 2015 Dec 2;43(21):10421-9. doi: 10.1093/nar/gkv1098. Epub 2015 Oct 22.

5.

Untangling reaction pathways through modern approaches to high-throughput single-molecule force-spectroscopy experiments.

Dulin D, Berghuis BA, Depken M, Dekker NH.

Curr Opin Struct Biol. 2015 Oct;34:116-22. doi: 10.1016/j.sbi.2015.08.007. Epub 2015 Oct 1. Review.

PMID:
26434413
6.

Strand separation establishes a sustained lock at the Tus-Ter replication fork barrier.

Berghuis BA, Dulin D, Xu ZQ, van Laar T, Cross B, Janissen R, Jergic S, Dixon NE, Depken M, Dekker NH.

Nat Chem Biol. 2015 Aug;11(8):579-85. doi: 10.1038/nchembio.1857. Epub 2015 Jul 6.

PMID:
26147356
7.

Elongation-Competent Pauses Govern the Fidelity of a Viral RNA-Dependent RNA Polymerase.

Dulin D, Vilfan ID, Berghuis BA, Hage S, Bamford DH, Poranen MM, Depken M, Dekker NH.

Cell Rep. 2015 Feb 17;10(6):983-992. doi: 10.1016/j.celrep.2015.01.031. Epub 2015 Feb 12.

8.

A force calibration standard for magnetic tweezers.

Yu Z, Dulin D, Cnossen J, Köber M, van Oene MM, Ordu O, Berghuis BA, Hensgens T, Lipfert J, Dekker NH.

Rev Sci Instrum. 2014 Dec;85(12):123114. doi: 10.1063/1.4904148.

PMID:
25554279
9.

Invincible DNA tethers: covalent DNA anchoring for enhanced temporal and force stability in magnetic tweezers experiments.

Janissen R, Berghuis BA, Dulin D, Wink M, van Laar T, Dekker NH.

Nucleic Acids Res. 2014 Oct;42(18):e137. doi: 10.1093/nar/gku677. Epub 2014 Aug 19.

10.

Exploring the structure of the N-terminal domain of CP29 with ultrafast fluorescence spectroscopy.

Berghuis BA, Spruijt RB, Koehorst RB, van Hoek A, Laptenok SP, van Oort B, van Amerongen H.

Eur Biophys J. 2010 Mar;39(4):631-8. doi: 10.1007/s00249-009-0519-9. Epub 2009 Jul 29.

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