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Fast and accurate bacterial species identification in urine specimens using LC-MS/MS mass spectrometry and machine learning.

Roux-Dalvai F, Gotti C, Leclercq M, Hélie MC, Boissinot M, Arrey TN, Dauly C, Fournier F, Kelly I, Marcoux J, Bestman-Smith J, Bergeron MG, Droit A.

Mol Cell Proteomics. 2019 Oct 4. pii: mcp.TIR119.001559. doi: 10.1074/mcp.TIR119.001559. [Epub ahead of print]


Culture-enriched human gut microbiomes reveal core and accessory resistance genes.

Raymond F, Boissinot M, Ouameur AA, Déraspe M, Plante PL, Kpanou SR, Bérubé È, Huletsky A, Roy PH, Ouellette M, Bergeron MG, Corbeil J.

Microbiome. 2019 Apr 5;7(1):56. doi: 10.1186/s40168-019-0669-7.


Method for isolation of both lactose-fermenting and - non-fermenting Escherichia albertii strains from stool samples.

Maheux AF, Brodeur S, Bérubé È, Boudreau DK, Abed JY, Boissinot M, Bissonnette L, Bergeron MG.

J Microbiol Methods. 2018 Nov;154:134-140. doi: 10.1016/j.mimet.2018.09.008. Epub 2018 Sep 18.


Penicillin induces alterations in glutamine metabolism in Streptococcus pneumoniae.

El Khoury JY, Boucher N, Bergeron MG, Leprohon P, Ouellette M.

Sci Rep. 2017 Nov 6;7(1):14587. doi: 10.1038/s41598-017-15035-y.


Draft Genome Sequence of a Sporulating and Motile Strain of Lachnotalea glycerini Isolated from Water in Québec City, Canada.

Maheux AF, Boudreau DK, Bérubé È, Boissinot M, Raymond F, Brodeur S, Corbeil J, Isabel S, Omar RF, Bergeron MG.

Genome Announc. 2017 Oct 19;5(42). pii: e01059-17. doi: 10.1128/genomeA.01059-17.


Draft Genome Sequence of Romboutsia maritimum sp. nov. Strain CCRI-22766T, Isolated from Coastal Estuarine Mud.

Maheux AF, Boudreau DK, Bérubé È, Boissinot M, Raymond F, Brodeur S, Corbeil J, Brightwell G, Broda D, Omar RF, Bergeron MG.

Genome Announc. 2017 Oct 12;5(41). pii: e01044-17. doi: 10.1128/genomeA.01044-17.


Draft Genome Sequence of Romboutsia weinsteinii sp. nov. Strain CCRI-19649T Isolated from Surface Water.

Maheux AF, Boudreau DK, Bérubé È, Boissinot M, Cantin P, Raymond F, Corbeil J, Omar RF, Bergeron MG.

Genome Announc. 2017 Oct 5;5(40). pii: e00901-17. doi: 10.1128/genomeA.00901-17.


Empowerment of Women: Closing the Medical Technologies Gender Gap.

Omar RF, Guilbert E, Gallo MF, Leboeuf M, Boissinot M, Sellam A, Trottier S, Kobinger G, Bergeron MG.

J Obstet Gynaecol Can. 2018 Jan;40(1):78-83. doi: 10.1016/j.jogc.2017.07.009. Epub 2017 Sep 12. No abstract available.


CRENAME, A Molecular Microbiology Method Enabling Multiparametric Assessment of Potable/Drinking Water.

Bissonnette L, Maheux AF, Bergeron MG.

Methods Mol Biol. 2017;1620:141-151. doi: 10.1007/978-1-4939-7060-5_9.


Rapid molecular identification of fecal origin-colonies growing on Enterococcus spp.-specific culture methods.

Maheux AF, Bouchard S, Bérubé È, Bergeron MG.

J Water Health. 2017 Apr;15(2):239-250. doi: 10.2166/wh.2016.199.


Portable devices and mobile instruments for infectious diseases point-of-care testing.

Bissonnette L, Bergeron MG.

Expert Rev Mol Diagn. 2017 May;17(5):471-494. doi: 10.1080/14737159.2017.1310619. Epub 2017 Apr 11. Review.


Inhibition of MRSA and of Clostridium difficile by durancin 61A: synergy with bacteriocins and antibiotics.

Hanchi H, Hammami R, Gingras H, Kourda R, Bergeron MG, Ben Hamida J, Ouellette M, Fliss I.

Future Microbiol. 2017 Mar;12:205-212. doi: 10.2217/fmb-2016-0113. Epub 2017 Feb 20.


Use of phylogenetical analysis to predict susceptibility of pathogenic Candida spp. to antifungal drugs.

Maheux AF, Sellam A, Piché Y, Boissinot M, Pelletier R, Boudreau DK, Picard FJ, Trépanier H, Boily MJ, Ouellette M, Roy PH, Bergeron MG.

J Microbiol Methods. 2016 Dec;131:51-60. doi: 10.1016/j.mimet.2016.09.020. Epub 2016 Oct 3.


Partial recovery of microbiomes after antibiotic treatment.

Raymond F, Déraspe M, Boissinot M, Bergeron MG, Corbeil J.

Gut Microbes. 2016 Sep 2;7(5):428-34. doi: 10.1080/19490976.2016.1216747. Epub 2016 Aug 5.


The GenePOC Platform, a Rational Solution for Extreme Point-of-Care Testing.

Bissonnette L, Bergeron MG.

Micromachines (Basel). 2016 May 24;7(6). pii: E94. doi: 10.3390/mi7060094. Review.


Recombinase Polymerase Amplification for Diagnostic Applications.

Daher RK, Stewart G, Boissinot M, Bergeron MG.

Clin Chem. 2016 Jul;62(7):947-58. doi: 10.1373/clinchem.2015.245829. Epub 2016 May 9. Review.


Cost-effectiveness analysis of antiviral treatment in the management of seasonal influenza A: point-of-care rapid test versus clinical judgment.

Nshimyumukiza L, Douville X, Fournier D, Duplantie J, Daher RK, Charlebois I, Longtin J, Papenburg J, Guay M, Boissinot M, Bergeron MG, Boudreau D, Gagné C, Rousseau F, Reinharz D.

Influenza Other Respir Viruses. 2016 Mar;10(2):113-21. doi: 10.1111/irv.12359. Epub 2016 Jan 29.


Nisin is an effective inhibitor of Clostridium difficile vegetative cells and spore germination.

Le Lay C, Dridi L, Bergeron MG, Ouellette M, Fliss IL.

J Med Microbiol. 2016 Feb;65(2):169-75. doi: 10.1099/jmm.0.000202. Epub 2015 Nov 9.


The initial state of the human gut microbiome determines its reshaping by antibiotics.

Raymond F, Ouameur AA, Déraspe M, Iqbal N, Gingras H, Dridi B, Leprohon P, Plante PL, Giroux R, Bérubé È, Frenette J, Boudreau DK, Simard JL, Chabot I, Domingo MC, Trottier S, Boissinot M, Huletsky A, Roy PH, Ouellette M, Bergeron MG, Corbeil J.

ISME J. 2016 Mar;10(3):707-20. doi: 10.1038/ismej.2015.148. Epub 2015 Sep 11.


Differences in antibiotic-induced oxidative stress responses between laboratory and clinical isolates of Streptococcus pneumoniae.

Dridi B, Lupien A, Bergeron MG, Leprohon P, Ouellette M.

Antimicrob Agents Chemother. 2015 Sep;59(9):5420-6. doi: 10.1128/AAC.00316-15. Epub 2015 Jun 22.


Erratum for Maheux et al., Abilities of the mCP Agar Method and CRENAME Alpha Toxin-Specific Real-Time PCR Assay To Detect Clostridium perfringens Spores in Drinking Water.

Maheux AF, Bérubé È, Boudreau DK, Villéger R, Cantin P, Boissinot M, Bissonnette L, Bergeron MG.

Appl Environ Microbiol. 2014 Dec;80(23):7443. doi: 10.1128/AEM.03147-14. No abstract available.


Comparison of four β-glucuronidase and β-galactosidase-based commercial culture methods used to detect Escherichia coli and total coliforms in water.

Maheux AF, Dion-Dupont V, Bouchard S, Bisson MA, Bergeron MG, Rodriguez MJ.

J Water Health. 2015 Jun;13(2):340-52. doi: 10.2166/wh.2014.175.


Multiple mutations and increased RNA expression in tetracycline-resistant Streptococcus pneumoniae as determined by genome-wide DNA and mRNA sequencing.

Lupien A, Gingras H, Bergeron MG, Leprohon P, Ouellette M.

J Antimicrob Chemother. 2015 Jul;70(7):1946-59. doi: 10.1093/jac/dkv060. Epub 2015 Apr 9.


Multiparametric comparison of chromogenic-based culture methods used to assess the microbiological quality of drinking water and the mFC method combined with a molecular confirmation procedure.

Maheux AF, Dion-Dupont V, Bisson MA, Bouchard S, Jubinville É, Nkuranga M, Rodrigue L, Bergeron MG, Rodriguez MJ.

J Water Health. 2015 Mar;13(1):67-72. doi: 10.2166/wh.2014.059.


Structured oligonucleotides for target indexing to allow single-vessel PCR amplification and solid support microarray hybridization.

Girard LD, Boissinot K, Peytavi R, Boissinot M, Bergeron MG.

Analyst. 2015 Feb 7;140(3):912-21. doi: 10.1039/c4an01352b.


Influence of sequence mismatches on the specificity of recombinase polymerase amplification technology.

Daher RK, Stewart G, Boissinot M, Boudreau DK, Bergeron MG.

Mol Cell Probes. 2015 Apr;29(2):116-21. doi: 10.1016/j.mcp.2014.11.005. Epub 2014 Dec 4.


From cellular lysis to microarray detection, an integrated thermoplastic elastomer (TPE) point of care Lab on a Disc.

Roy E, Stewart G, Mounier M, Malic L, Peytavi R, Clime L, Madou M, Bossinot M, Bergeron MG, Veres T.

Lab Chip. 2015 Jan 21;15(2):406-16. doi: 10.1039/c4lc00947a.


Characterization of Escherichia fergusonii and Escherichia albertii isolated from water.

Maheux AF, Boudreau DK, Bergeron MG, Rodriguez MJ.

J Appl Microbiol. 2014 Aug;117(2):597-609. doi: 10.1111/jam.12551. Epub 2014 Jun 11.


Molecular method for detection of total coliforms in drinking water samples.

Maheux AF, Boudreau DK, Bisson MA, Dion-Dupont V, Bouchard S, Nkuranga M, Bergeron MG, Rodriguez MJ.

Appl Environ Microbiol. 2014 Jul;80(14):4074-84. doi: 10.1128/AEM.00546-14. Epub 2014 Apr 25.


Isothermal recombinase polymerase amplification assay applied to the detection of group B streptococci in vaginal/anal samples.

Daher RK, Stewart G, Boissinot M, Bergeron MG.

Clin Chem. 2014 Apr;60(4):660-6. doi: 10.1373/clinchem.2013.213504. Epub 2014 Jan 24.


Universal vaginal applicator for the uniform distribution of vaginal gel and cream formulations: a magnetic resonance imaging study.

Omar RF, Trottier S, Brousseau G, Ouellet C, Danylo A, Ong T, Bergeron MG.

J Obstet Gynaecol Can. 2014 Jan;36(1):42-50. doi: 10.1016/S1701-2163(15)30682-4.


Genomic analyses of DNA transformation and penicillin resistance in Streptococcus pneumoniae clinical isolates.

Fani F, Leprohon P, Zhanel GG, Bergeron MG, Ouellette M.

Antimicrob Agents Chemother. 2014;58(3):1397-403. doi: 10.1128/AAC.01311-13. Epub 2013 Dec 16.


Abilities of the mCP Agar method and CRENAME alpha toxin-specific real-time PCR assay to detect Clostridium perfringens spores in drinking water.

Maheux AF, Bérubé E, Boudreau DK, Villéger R, Cantin P, Boissinot M, Bissonnette L, Bergeron MG.

Appl Environ Microbiol. 2013 Dec;79(24):7654-61. doi: 10.1128/AEM.02791-13. Epub 2013 Sep 27. Erratum in: Appl Environ Microbiol. 2014 Dec;80(23):7443.


Genetic diversity and molecular evolution of the major human metapneumovirus surface glycoproteins over a decade.

Papenburg J, Carbonneau J, Isabel S, Bergeron MG, Williams JV, De Serres G, Hamelin MÈ, Boivin G.

J Clin Virol. 2013 Nov;58(3):541-7. doi: 10.1016/j.jcv.2013.08.029. Epub 2013 Sep 4.


Polythiophene biosensor for rapid detection of microbial particles in water.

Plante MP, Bérubé E, Bissonnette L, Bergeron MG, Leclerc M.

ACS Appl Mater Interfaces. 2013 Jun 12;5(11):4544-8. doi: 10.1021/am400162h. Epub 2013 Apr 8.


Impact of DNA sequence and oligonucleotide length on a polythiophene-based fluorescent DNA biosensor.

Charlebois I, Gravel C, Arrad N, Boissinot M, Bergeron MG, Leclerc M.

Macromol Biosci. 2013 Jun;13(6):717-22. doi: 10.1002/mabi.201200469. Epub 2013 Mar 19.


Rapid detection of the Escherichia coli genospecies in water by conventional and real-time PCR.

Maheux AF, Bissonnette L, Bergeron MG.

Methods Mol Biol. 2013;943:289-305. doi: 10.1007/978-1-60327-353-4_20.


Comparative analysis of classical and molecular microbiology methods for the detection of Escherichia coli and Enterococcus spp. in well water.

Maheux AF, Huppé V, Bissonnette L, Boissinot M, Rodrigue L, Bérubé È, Bergeron MG.

J Environ Monit. 2012 Nov;14(11):2983-9. doi: 10.1039/c2em30565h.


Molecular evolution of respiratory syncytial virus fusion gene, Canada, 2006-2010.

Papenburg J, Carbonneau J, Hamelin MÈ, Isabel S, Bouhy X, Ohoumanne N, Déry P, Paes BA, Corbeil J, Bergeron MG, De Serres G, Boivin G.

Emerg Infect Dis. 2012 Jan;18(1):120-4. doi: 10.3201/eid1801.110515.


Rapid filtration separation-based sample preparation method for Bacillus spores in powdery and environmental matrices.

Isabel S, Boissinot M, Charlebois I, Fauvel CM, Shi LE, Lévesque JC, Paquin AT, Bastien M, Stewart G, Leblanc E, Sato S, Bergeron MG.

Appl Environ Microbiol. 2012 Mar;78(5):1505-12. doi: 10.1128/AEM.06696-11. Epub 2011 Dec 30.


Infectious Disease Management through Point-of-Care Personalized Medicine Molecular Diagnostic Technologies.

Bissonnette L, Bergeron MG.

J Pers Med. 2012 May 2;2(2):50-70. doi: 10.3390/jpm2020050. Review.


Development of a real-time PCR assay for the specific detection and identification of Streptococcus pseudopneumoniae using the recA gene.

Sistek V, Boissinot M, Boudreau DK, Huletsky A, Picard FJ, Bergeron MG.

Clin Microbiol Infect. 2012 Nov;18(11):1089-96. doi: 10.1111/j.1469-0691.2011.03684.x. Epub 2011 Oct 25.


Amplification strategy using aggregates of ferrocene-containing cationic polythiophene for sensitive and specific electrochemical detection of DNA.

Lepage PH, Peytavi R, Bergeron MG, Leclerc M.

Anal Chem. 2011 Nov 1;83(21):8086-92. doi: 10.1021/ac200713f. Epub 2011 Oct 3.


Enterococcus ureasiticus sp. nov. and Enterococcus quebecensis sp. nov., isolated from water.

Sistek V, Maheux AF, Boissinot M, Bernard KA, Cantin P, Cleenwerck I, De Vos P, Bergeron MG.

Int J Syst Evol Microbiol. 2012 Jun;62(Pt 6):1314-20. doi: 10.1099/ijs.0.029033-0. Epub 2011 Jul 25.


Rapid concentration and molecular enrichment approach for sensitive detection of Escherichia coli and Shigella species in potable water samples.

Maheux AF, Bissonnette L, Boissinot M, Bernier JL, Huppé V, Picard FJ, Bérubé É, Bergeron MG.

Appl Environ Microbiol. 2011 Sep;77(17):6199-207. doi: 10.1128/AEM.02337-10. Epub 2011 Jul 15.


The future of microbicides.

Omar RF, Bergeron MG.

Int J Infect Dis. 2011 Oct;15(10):e656-60. doi: 10.1016/j.ijid.2011.05.001. Epub 2011 Jun 25. Review.


Ability of three DNA-based assays to identify presumptive Escherichia coli colonies isolated from water by the culture-based mFC agar method.

Maheux AF, Bérubé E, Boudreau DK, Cantin P, Boissinot M, Bissonnette L, Rodrigue L, Bergeron MG.

Water Res. 2011 Apr;45(8):2638-46. doi: 10.1016/j.watres.2011.02.021. Epub 2011 Feb 22.


Method for rapid and sensitive detection of Enterococcus sp. and Enterococcus faecalis/faecium cells in potable water samples.

Maheux AF, Bissonnette L, Boissinot M, Bernier JL, Huppé V, Bérubé E, Boudreau DK, Picard FJ, Huletsky A, Bergeron MG.

Water Res. 2011 Mar;45(6):2342-54. doi: 10.1016/j.watres.2011.01.019. Epub 2011 Feb 1.


Should microbicides be controlled by women or by physicians?

Piret J, Bergeron MG.

Int J Infect Dis. 2010 Sep;14 Suppl 3:e14-7. doi: 10.1016/j.ijid.2010.02.2256. Epub 2010 Jun 17. Review.

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