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Items: 1 to 50 of 192

1.

Anharmonicity of Vibrational Modes in Hydrogen Chloride-Water Mixtures.

Perlt E, Berger SA, Kelterer AM, Kirchner B.

J Chem Theory Comput. 2019 Apr 9;15(4):2535-2547. doi: 10.1021/acs.jctc.8b01070. Epub 2019 Mar 15.

PMID:
30811198
2.

Integrating chytrid fungal parasites into plankton ecology: research gaps and needs.

Frenken T, Alacid E, Berger SA, Bourne EC, Gerphagnon M, Grossart HP, Gsell AS, Ibelings BW, Kagami M, Küpper FC, Letcher PM, Loyau A, Miki T, Nejstgaard JC, Rasconi S, Reñé A, Rohrlack T, Rojas-Jimenez K, Schmeller DS, Scholz B, Seto K, Sime-Ngando T, Sukenik A, Van de Waal DB, Van den Wyngaert S, Van Donk E, Wolinska J, Wurzbacher C, Agha R.

Environ Microbiol. 2017 Oct;19(10):3802-3822. doi: 10.1111/1462-2920.13827. Epub 2017 Jul 13. Review.

PMID:
28618196
3.

Thermocline deepening boosts ecosystem metabolism: evidence from a large-scale lake enclosure experiment simulating a summer storm.

Giling DP, Nejstgaard JC, Berger SA, Grossart HP, Kirillin G, Penske A, Lentz M, Casper P, Sareyka J, Gessner MO.

Glob Chang Biol. 2017 Apr;23(4):1448-1462. doi: 10.1111/gcb.13512. Epub 2016 Oct 20.

PMID:
27664076
4.

A light-induced shortcut in the planktonic microbial loop.

Ptacnik R, Gomes A, Royer SJ, Berger SA, Calbet A, Nejstgaard JC, Gasol JM, Isari S, Moorthi SD, Ptacnikova R, Striebel M, Sazhin AF, Tsagaraki TM, Zervoudaki S, Altoja K, Dimitriou PD, Laas P, Gazihan A, Martínez RA, Schabhüttl S, Santi I, Sousoni D, Pitta P.

Sci Rep. 2016 Jul 11;6:29286. doi: 10.1038/srep29286.

5.

HIV Trends: Defining "The Middle East".

Berger SA.

Int J Infect Dis. 2016 Jul;48:123. doi: 10.1016/j.ijid.2016.03.026. Epub 2016 Apr 21. No abstract available.

6.

Registered Replication Report: Hart & Albarracín (2011).

Eerland A, Sherrill AM, Magliano JP, Zwaan RA, Arnal JD, Aucoin PA, Berger SA, Birt AR, Capezza N, Carlucci M, Crocker C, Ferretti TR, Kibbe MR, Knepp MM, Kurby CA, Melcher JM, Michael SW, Poirier C, Prenoveau JM.

Perspect Psychol Sci. 2016 Jan;11(1):158-71. doi: 10.1177/1745691615605826.

PMID:
26817732
7.

Discovery, Prevalence, and Persistence of Novel Circular Single-Stranded DNA Viruses in the Ctenophores Mnemiopsis leidyi and Beroe ovata.

Breitbart M, Benner BE, Jernigan PE, Rosario K, Birsa LM, Harbeitner RC, Fulford S, Graham C, Walters A, Goldsmith DB, Berger SA, Nejstgaard JC.

Front Microbiol. 2015 Dec 18;6:1427. doi: 10.3389/fmicb.2015.01427. eCollection 2015.

8.

Future climate scenarios for a coastal productive planktonic food web resulting in microplankton phenology changes and decreased trophic transfer efficiency.

Calbet A, Sazhin AF, Nejstgaard JC, Berger SA, Tait ZS, Olmos L, Sousoni D, Isari S, Martínez RA, Bouquet JM, Thompson EM, Båmstedt U, Jakobsen HH.

PLoS One. 2014 Apr 10;9(4):e94388. doi: 10.1371/journal.pone.0094388. eCollection 2014.

9.

Placing environmental next-generation sequencing amplicons from microbial eukaryotes into a phylogenetic context.

Dunthorn M, Otto J, Berger SA, Stamatakis A, Mahé F, Romac S, de Vargas C, Audic S; Biomarks Consortium, Stock A, Kauff F, Stoeck T.

Mol Biol Evol. 2014 Apr;31(4):993-1009. doi: 10.1093/molbev/msu055. Epub 2014 Jan 27.

PMID:
24473288
10.

Multiple ITS haplotypes in the genome of the lichenized basidiomycete Cora inversa (Hygrophoraceae): fact or artifact?

Lücking R, Lawrey JD, Gillevet PM, Sikaroodi M, Dal-Forno M, Berger SA.

J Mol Evol. 2014 Feb;78(2):148-62. doi: 10.1007/s00239-013-9603-y. Epub 2013 Dec 17.

PMID:
24343640
11.

Metagenomic species profiling using universal phylogenetic marker genes.

Sunagawa S, Mende DR, Zeller G, Izquierdo-Carrasco F, Berger SA, Kultima JR, Coelho LP, Arumugam M, Tap J, Nielsen HB, Rasmussen S, Brunak S, Pedersen O, Guarner F, de Vos WM, Wang J, Li J, Doré J, Ehrlich SD, Stamatakis A, Bork P.

Nat Methods. 2013 Dec;10(12):1196-9. doi: 10.1038/nmeth.2693. Epub 2013 Oct 20.

PMID:
24141494
12.

Unraveling graft-versus-host disease and graft-versus-leukemia responses using TCR Vβ spectratype analysis in a murine bone marrow transplantation model.

Fanning SL, Zilberberg J, Stein J, Vazzana K, Berger SA, Korngold R, Friedman TM.

J Immunol. 2013 Jan 1;190(1):447-57. doi: 10.4049/jimmunol.1201641. Epub 2012 Nov 30.

13.

Coupling SIMD and SIMT architectures to boost performance of a phylogeny-aware alignment kernel.

Alachiotis N, Berger SA, Stamatakis A.

BMC Bioinformatics. 2012 Aug 9;13:196. doi: 10.1186/1471-2105-13-196.

14.

Elevated calpain activity in acute myelogenous leukemia correlates with decreased calpastatin expression.

Niapour M, Farr C, Minden M, Berger SA.

Blood Cancer J. 2012 Jan;2(1):e51. doi: 10.1038/bcj.2011.50. Epub 2012 Jan 13.

15.

RAxML-Light: a tool for computing terabyte phylogenies.

Stamatakis A, Aberer AJ, Goll C, Smith SA, Berger SA, Izquierdo-Carrasco F.

Bioinformatics. 2012 Aug 1;28(15):2064-6. doi: 10.1093/bioinformatics/bts309. Epub 2012 May 24.

16.

TNFα modulates protein degradation pathways in rheumatoid arthritis synovial fibroblasts.

Connor AM, Mahomed N, Gandhi R, Keystone EC, Berger SA.

Arthritis Res Ther. 2012 Mar 14;14(2):R62. doi: 10.1186/ar3778.

17.

Induction of apoptosis in Eμ-myc lymphoma cells in vitro and in vivo through calpain inhibition.

Li H, Nepal RM, Martin A, Berger SA.

Exp Hematol. 2012 Jul;40(7):548-563.e2. doi: 10.1016/j.exphem.2012.02.002. Epub 2012 Feb 23.

PMID:
22366408
18.

Aligning short reads to reference alignments and trees.

Berger SA, Stamatakis A.

Bioinformatics. 2011 Aug 1;27(15):2068-75. doi: 10.1093/bioinformatics/btr320. Epub 2011 Jun 2.

PMID:
21636595
19.

Performance, accuracy, and Web server for evolutionary placement of short sequence reads under maximum likelihood.

Berger SA, Krompass D, Stamatakis A.

Syst Biol. 2011 May;60(3):291-302. doi: 10.1093/sysbio/syr010. Epub 2011 Mar 23.

20.

ABC50 modulates sensitivity of HL60 leukemic cells to endoplasmic reticulum (ER) stress-induced cell death.

Yu Y, Zhang Y, Zhu Z, Berger SA.

Biochem Pharmacol. 2011 Feb 15;81(4):488-97. doi: 10.1016/j.bcp.2010.11.007. Epub 2010 Nov 16.

PMID:
21087599
21.

Pemphigus vulgaris: bilateral plica semilunaris involvement.

Fiore JM, Perry HD, Donnenfeld ED, Berger SA.

Cornea. 2011 Mar;30(3):357-9. doi: 10.1097/ICO.0b013e3181eadba3.

PMID:
21045669
22.

MLTreeMap--accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies.

Stark M, Berger SA, Stamatakis A, von Mering C.

BMC Genomics. 2010 Aug 5;11:461. doi: 10.1186/1471-2164-11-461.

23.

The immunological impact of genetic drift in the B10.BR congenic inbred mouse strain.

Fanning SL, Appel MY, Berger SA, Korngold R, Friedman TM.

J Immunol. 2009 Oct 1;183(7):4261-72. doi: 10.4049/jimmunol.0900971. Epub 2009 Sep 14.

24.

Anti-tumor immunity in a model of acute myeloid leukemia.

Cheuk AT, Wells JW, Chan L, Westwood NB, Berger SA, Yagita H, Okumura K, Farzaneh F, Mufti GJ, Guinn BA.

Leuk Lymphoma. 2009 Mar;50(3):447-54. doi: 10.1080/10428190802653776.

PMID:
19197726
25.

Regulation of calpain activity by c-Myc through calpastatin and promotion of transformation in c-Myc-negative cells by calpastatin suppression.

Niapour M, Yu Y, Berger SA.

J Biol Chem. 2008 Aug 1;283(31):21371-81. doi: 10.1074/jbc.M801462200. Epub 2008 Jun 10.

26.

Overlap between in vitro donor antihost and in vivo posttransplantation TCR Vbeta use: a new paradigm for designer allogeneic blood and marrow transplantation.

Friedman TM, Goldgirsh K, Berger SA, Zilberberg J, Filicko-O'Hara J, Flomenberg N, Donato M, Rowley SD, Korngold R.

Blood. 2008 Oct 15;112(8):3517-25. doi: 10.1182/blood-2008-03-145391. Epub 2008 Jun 9.

27.

AID and RAG1 do not contribute to lymphomagenesis in Emu c-myc transgenic mice.

Nepal RM, Zaheen A, Basit W, Li L, Berger SA, Martin A.

Oncogene. 2008 Aug 7;27(34):4752-6. doi: 10.1038/onc.2008.111. Epub 2008 Apr 14.

PMID:
18408759
28.

Mitochondrial regulation by c-Myc and hypoxia-inducible factor-1 alpha controls sensitivity to econazole.

Yu Y, Niapour M, Zhang Y, Berger SA.

Mol Cancer Ther. 2008 Mar;7(3):483-91. doi: 10.1158/1535-7163.MCT-07-2050.

30.

Sickle cell blood flow in the microcirculation.

Berger SA, Carlson BE.

Conf Proc IEEE Eng Med Biol Soc. 2004;7:5057-60.

PMID:
17271454
31.

By any other name: ambiguity in marketing proprietary anti-infective agents.

Berger SA.

Clin Infect Dis. 2007 Jan 1;44(1):65-8. Epub 2006 Nov 21.

PMID:
17143817
32.

Water temperature and mixing depth affect timing and magnitude of events during spring succession of the plankton.

Berger SA, Diehl S, Stibor H, Trommer G, Ruhenstroth M, Wild A, Weigert A, Jäger CG, Striebel M.

Oecologia. 2007 Jan;150(4):643-54. Epub 2006 Sep 21.

PMID:
17024384
33.

Signaling pathways influencing SLF and c-kit-mediated survival and proliferation.

Berger SA.

Immunol Res. 2006;35(1-2):1-12. Review.

PMID:
17003505
34.
35.

Pseudo-borreliosis in patients with malaria.

Berger SA, David L.

Am J Trop Med Hyg. 2005 Jul;73(1):207-9.

PMID:
16014860
36.

Werner Goldsmith: life and work (1924-2003).

Berger SA, King AI, Lewis JL.

Annu Rev Biomed Eng. 2005;7:1-20.

PMID:
16004564
37.

Development of a whole cell vaccine for acute myeloid leukaemia.

Cheuk AT, Chan L, Czepulkowski B, Berger SA, Yagita H, Okumura K, Farzaneh F, Mufti GJ, Guinn BA.

Cancer Immunol Immunother. 2006 Jan;55(1):68-75. Epub 2005 Oct 27. Review.

PMID:
15891884
38.

GIDEON: a comprehensive Web-based resource for geographic medicine.

Berger SA.

Int J Health Geogr. 2005 Apr 22;4(1):10.

39.

A turbulence model for pulsatile arterial flows.

Younis BA, Berger SA.

J Biomech Eng. 2004 Oct;126(5):578-84.

PMID:
15648810
40.

A phenomenological model for atherosclerotic plaque growth and rupture.

Zohdi TI, Holzapfel GA, Berger SA.

J Theor Biol. 2004 Apr 7;227(3):437-43.

PMID:
15019510
41.

Insight into the intrinsic sensitivity of the PCR assay used to detect CMV infection in amniotic fluid specimens.

Avidor B, Efrat G, Weinberg M, Kra-oz Z, Satinger J, Mitrani-Rosenbaum S, Yaron Y, Shulman L, Tepperberg-Oikawa M, Wolf D, Berger SA, Lipitz S, Mendelson E, Giladi M.

J Clin Virol. 2004 Apr;29(4):260-70.

PMID:
15018854
43.

Mast cells stimulated by membrane-bound, but not soluble, steel factor are dependent on phospholipase C activation.

Trieselmann NZ, Soboloff J, Berger SA.

Cell Mol Life Sci. 2003 Apr;60(4):759-66.

PMID:
12785722
44.
45.

Asthma in adventure travelers: a prospective study evaluating the occurrence and risk factors for acute exacerbations.

Golan Y, Onn A, Villa Y, Avidor Y, Kivity S, Berger SA, Shapira I, Levo Y, Giladi M.

Arch Intern Med. 2002 Nov 25;162(21):2421-6.

PMID:
12437400
46.

Sensitivity of myeloid leukemia cells to calcium influx blockade: application to bone marrow purging.

Soboloff J, Zhang Y, Minden M, Berger SA.

Exp Hematol. 2002 Oct;30(10):1219-26.

PMID:
12384154
47.

Hemorrhagic fevers and bioterror.

Berger SA, Shapira I.

Isr Med Assoc J. 2002 Jul;4(7):513-9. Review. No abstract available.

48.

Numerical analysis of flow through a severely stenotic carotid artery bifurcation.

Stroud JS, Berger SA, Saloner D.

J Biomech Eng. 2002 Feb;124(1):9-20.

PMID:
11871610
49.

Sustained ER Ca2+ depletion suppresses protein synthesis and induces activation-enhanced cell death in mast cells.

Soboloff J, Berger SA.

J Biol Chem. 2002 Apr 19;277(16):13812-20. Epub 2002 Feb 8.

50.

West Nile encephalitis in Israel, 1999: the New York connection.

Giladi M, Metzkor-Cotter E, Martin DA, Siegman-Igra Y, Korczyn AD, Rosso R, Berger SA, Campbell GL, Lanciotti RS.

Emerg Infect Dis. 2001 Jul-Aug;7(4):659-61.

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