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Items: 1 to 50 of 198

1.

Population Genetics of the Highly Polymorphic RPP8 Gene Family.

MacQueen A, Tian D, Chang W, Holub E, Kreitman M, Bergelson J.

Genes (Basel). 2019 Sep 8;10(9). pii: E691. doi: 10.3390/genes10090691.

2.

Characterizing both bacteria and fungi improves understanding of the Arabidopsis root microbiome.

Bergelson J, Mittelstrass J, Horton MW.

Sci Rep. 2019 Jan 10;9(1):24. doi: 10.1038/s41598-018-37208-z.

3.

Genome-wide association studies on the phyllosphere microbiome: Embracing complexity in host-microbe interactions.

Beilsmith K, Thoen MPM, Brachi B, Gloss AD, Khan MH, Bergelson J.

Plant J. 2019 Jan;97(1):164-181. doi: 10.1111/tpj.14170. Epub 2019 Jan 5.

PMID:
30466152
4.

Genome-wide association study reveals new loci involved in Arabidopsis thaliana and Turnip mosaic virus (TuMV) interactions in the field.

Rubio B, Cosson P, Caballero M, Revers F, Bergelson J, Roux F, Schurdi-Levraud V.

New Phytol. 2019 Mar;221(4):2026-2038. doi: 10.1111/nph.15507. Epub 2018 Nov 5.

PMID:
30282123
5.

The molecular genetic basis of herbivory between butterflies and their host plants.

Nallu S, Hill JA, Don K, Sahagun C, Zhang W, Meslin C, Snell-Rood E, Clark NL, Morehouse NI, Bergelson J, Wheat CW, Kronforst MR.

Nat Ecol Evol. 2018 Sep;2(9):1418-1427. doi: 10.1038/s41559-018-0629-9. Epub 2018 Aug 3.

6.

Two-way mixed-effects methods for joint association analysis using both host and pathogen genomes.

Wang M, Roux F, Bartoli C, Huard-Chauveau C, Meyer C, Lee H, Roby D, McPeek MS, Bergelson J.

Proc Natl Acad Sci U S A. 2018 Jun 12;115(24):E5440-E5449. doi: 10.1073/pnas.1710980115. Epub 2018 May 30.

7.

The rate and potential relevance of new mutations in a colonizing plant lineage.

Exposito-Alonso M, Becker C, Schuenemann VJ, Reiter E, Setzer C, Slovak R, Brachi B, Hagmann J, Grimm DG, Chen J, Busch W, Bergelson J, Ness RW, Krause J, Burbano HA, Weigel D.

PLoS Genet. 2018 Feb 12;14(2):e1007155. doi: 10.1371/journal.pgen.1007155. eCollection 2018 Feb.

8.

Author Correction: Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time.

Frachon L, Libourel C, Villoutreix R, Carrère S, Glorieux C, Huard-Chauveau C, Navascués M, Gay L, Vitalis R, Baron E, Amsellem L, Bouchez O, Vidal M, Le Corre V, Roby D, Bergelson J, Roux F.

Nat Ecol Evol. 2018 Jan;2(1):194. doi: 10.1038/s41559-017-0405-2.

PMID:
29208992
9.

Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time.

Frachon L, Libourel C, Villoutreix R, Carrère S, Glorieux C, Huard-Chauveau C, Navascués M, Gay L, Vitalis R, Baron E, Amsellem L, Bouchez O, Vidal M, Le Corre V, Roby D, Bergelson J, Roux F.

Nat Ecol Evol. 2017 Oct;1(10):1551-1561. doi: 10.1038/s41559-017-0297-1. Epub 2017 Sep 4. Erratum in: Nat Ecol Evol. 2017 Dec 5;:.

PMID:
29185515
10.

Similar levels of gene content variation observed for Pseudomonas syringae populations extracted from single and multiple host species.

Karasov TL, Barrett L, Hershberg R, Bergelson J.

PLoS One. 2017 Sep 7;12(9):e0184195. doi: 10.1371/journal.pone.0184195. eCollection 2017.

11.

Mechanisms to Mitigate the Trade-Off between Growth and Defense.

Karasov TL, Chae E, Herman JJ, Bergelson J.

Plant Cell. 2017 Apr;29(4):666-680. doi: 10.1105/tpc.16.00931. Epub 2017 Mar 20. Review.

12.

Coxsackievirus Adenovirus Receptor Loss Impairs Adult Neurogenesis, Synapse Content, and Hippocampus Plasticity.

Zussy C, Loustalot F, Junyent F, Gardoni F, Bories C, Valero J, Desarménien MG, Bernex F, Henaff D, Bayo-Puxan N, Chen JW, Lonjon N, de Koninck Y, Malva JO, Bergelson JM, di Luca M, Schiavo G, Salinas S, Kremer EJ.

J Neurosci. 2016 Sep 14;36(37):9558-71. doi: 10.1523/JNEUROSCI.0132-16.2016.

13.

Genetic architecture and pleiotropy shape costs of Rps2-mediated resistance in Arabidopsis thaliana.

MacQueen A, Sun X, Bergelson J.

Nat Plants. 2016 Jul 18;2:16110. doi: 10.1038/nplants.2016.110.

14.

Differentiation between MAMP Triggered Defenses in Arabidopsis thaliana.

Vetter M, Karasov TL, Bergelson J.

PLoS Genet. 2016 Jun 23;12(6):e1006068. doi: 10.1371/journal.pgen.1006068. eCollection 2016 Jun.

15.

The Genetics Underlying Natural Variation in the Biotic Interactions of Arabidopsis thaliana: The Challenges of Linking Evolutionary Genetics and Community Ecology.

Roux F, Bergelson J.

Curr Top Dev Biol. 2016;119:111-56. doi: 10.1016/bs.ctdb.2016.03.001. Epub 2016 Apr 23. Review.

PMID:
27282025
16.

The Coxsackievirus and Adenovirus Receptor: Glycosylation and the Extracellular D2 Domain Are Not Required for Coxsackievirus B3 Infection.

Pinkert S, Röger C, Kurreck J, Bergelson JM, Fechner H.

J Virol. 2016 May 27;90(12):5601-5610. doi: 10.1128/JVI.00315-16. Print 2016 Jun 15.

17.

Modulation of R-gene expression across environments.

MacQueen A, Bergelson J.

J Exp Bot. 2016 Mar;67(7):2093-105. doi: 10.1093/jxb/erv530.

18.

A Proposal Regarding Best Practices for Validating the Identity of Genetic Stocks and the Effects of Genetic Variants.

Bergelson J, Buckler ES, Ecker JR, Nordborg M, Weigel D.

Plant Cell. 2016 Mar;28(3):606-9. doi: 10.1105/tpc.15.00502. Epub 2016 Mar 8. No abstract available.

19.

The Suramin Derivative NF449 Interacts with the 5-fold Vertex of the Enterovirus A71 Capsid to Prevent Virus Attachment to PSGL-1 and Heparan Sulfate.

Nishimura Y, McLaughlin NP, Pan J, Goldstein S, Hafenstein S, Shimizu H, Winkler JD, Bergelson JM.

PLoS Pathog. 2015 Oct 2;11(10):e1005184. doi: 10.1371/journal.ppat.1005184. eCollection 2015 Oct.

20.

16Stimator: statistical estimation of ribosomal gene copy numbers from draft genome assemblies.

Perisin M, Vetter M, Gilbert JA, Bergelson J.

ISME J. 2016 Apr;10(4):1020-4. doi: 10.1038/ismej.2015.161. Epub 2015 Sep 11.

21.

RIP3 Regulates Autophagy and Promotes Coxsackievirus B3 Infection of Intestinal Epithelial Cells.

Harris KG, Morosky SA, Drummond CG, Patel M, Kim C, Stolz DB, Bergelson JM, Cherry S, Coyne CB.

Cell Host Microbe. 2015 Aug 12;18(2):221-32. doi: 10.1016/j.chom.2015.07.007.

22.

A genome-wide survey reveals abundant rice blast R genes in resistant cultivars.

Zhang X, Yang S, Wang J, Jia Y, Huang J, Tan S, Zhong Y, Wang L, Gu L, Chen JQ, Pan Q, Bergelson J, Tian D.

Plant J. 2015 Oct;84(1):20-28. doi: 10.1111/tpj.12955. Erratum in: Plant J. 2015 Dec;84(5):1044.

23.

Coselected genes determine adaptive variation in herbivore resistance throughout the native range of Arabidopsis thaliana.

Brachi B, Meyer CG, Villoutreix R, Platt A, Morton TC, Roux F, Bergelson J.

Proc Natl Acad Sci U S A. 2015 Mar 31;112(13):4032-7. doi: 10.1073/pnas.1421416112. Epub 2015 Mar 16.

24.

Expression of human decay-accelerating factor on intestinal epithelium of transgenic mice does not facilitate infection by the enteral route.

Pan J, Zhang L, Odenwald MA, Shen L, Turner JR, Bergelson JM.

J Virol. 2015 Apr;89(8):4311-8. doi: 10.1128/JVI.03468-14. Epub 2015 Feb 4.

25.

Century-scale methylome stability in a recently diverged Arabidopsis thaliana lineage.

Hagmann J, Becker C, Müller J, Stegle O, Meyer RC, Wang G, Schneeberger K, Fitz J, Altmann T, Bergelson J, Borgwardt K, Weigel D.

PLoS Genet. 2015 Jan 8;11(1):e1004920. doi: 10.1371/journal.pgen.1004920. eCollection 2015 Jan.

26.

Unique features of the m6A methylome in Arabidopsis thaliana.

Luo GZ, MacQueen A, Zheng G, Duan H, Dore LC, Lu Z, Liu J, Chen K, Jia G, Bergelson J, He C.

Nat Commun. 2014 Nov 28;5:5630. doi: 10.1038/ncomms6630.

27.

Specificity of coxsackievirus B3 interaction with human, but not murine, decay-accelerating factor: replacement of a single residue within short consensus repeat 2 prevents virus attachment.

Pan J, Zhang L, Organtini LJ, Hafenstein S, Bergelson JM.

J Virol. 2015 Jan 15;89(2):1324-8. doi: 10.1128/JVI.02798-14. Epub 2014 Nov 12.

28.

Genome-wide association study of Arabidopsis thaliana leaf microbial community.

Horton MW, Bodenhausen N, Beilsmith K, Meng D, Muegge BD, Subramanian S, Vetter MM, Vilhjálmsson BJ, Nordborg M, Gordon JI, Bergelson J.

Nat Commun. 2014 Nov 10;5:5320. doi: 10.1038/ncomms6320.

29.

The long-term maintenance of a resistance polymorphism through diffuse interactions.

Karasov TL, Kniskern JM, Gao L, DeYoung BJ, Ding J, Dubiella U, Lastra RO, Nallu S, Roux F, Innes RW, Barrett LG, Hudson RR, Bergelson J.

Nature. 2014 Aug 28;512(7515):436-440. doi: 10.1038/nature13439. Epub 2014 Jul 6.

30.

Multiple FLC haplotypes defined by independent cis-regulatory variation underpin life history diversity in Arabidopsis thaliana.

Li P, Filiault D, Box MS, Kerdaffrec E, van Oosterhout C, Wilczek AM, Schmitt J, McMullan M, Bergelson J, Nordborg M, Dean C.

Genes Dev. 2014 Aug 1;28(15):1635-40. doi: 10.1101/gad.245993.114. Epub 2014 Jul 17.

31.

Genomic variability as a driver of plant-pathogen coevolution?

Karasov TL, Horton MW, Bergelson J.

Curr Opin Plant Biol. 2014 Apr;18:24-30. doi: 10.1016/j.pbi.2013.12.003. Epub 2014 Feb 1. Review.

32.
33.

The role of glucosinolates and the jasmonic acid pathway in resistance of Arabidopsis thaliana against molluscan herbivores.

Falk KL, Kästner J, Bodenhausen N, Schramm K, Paetz C, Vassão DG, Reichelt M, von Knorre D, Bergelson J, Erb M, Gershenzon J, Meldau S.

Mol Ecol. 2014 Mar;23(5):1188-1203. doi: 10.1111/mec.12610. Epub 2014 Jan 22.

34.

Echovirus 7 entry into polarized caco-2 intestinal epithelial cells involves core components of the autophagy machinery.

Kim C, Bergelson JM.

J Virol. 2014 Jan;88(1):434-43. doi: 10.1128/JVI.02706-13. Epub 2013 Oct 23.

35.

An atypical kinase under balancing selection confers broad-spectrum disease resistance in Arabidopsis.

Huard-Chauveau C, Perchepied L, Debieu M, Rivas S, Kroj T, Kars I, Bergelson J, Roux F, Roby D.

PLoS Genet. 2013;9(9):e1003766. doi: 10.1371/journal.pgen.1003766. Epub 2013 Sep 12.

36.

Enterovirus 71 binding to PSGL-1 on leukocytes: VP1-145 acts as a molecular switch to control receptor interaction.

Nishimura Y, Lee H, Hafenstein S, Kataoka C, Wakita T, Bergelson JM, Shimizu H.

PLoS Pathog. 2013;9(7):e1003511. doi: 10.1371/journal.ppat.1003511. Epub 2013 Jul 25.

37.

Picornavirus entry.

Bergelson JM, Coyne CB.

Adv Exp Med Biol. 2013;790:24-41. doi: 10.1007/978-1-4614-7651-1_2. Review.

PMID:
23884584
38.

Investigation of the geographical scale of adaptive phenological variation and its underlying genetics in Arabidopsis thaliana.

Brachi B, Villoutreix R, Faure N, Hautekèete N, Piquot Y, Pauwels M, Roby D, Cuguen J, Bergelson J, Roux F.

Mol Ecol. 2013 Aug;22(16):4222-4240. doi: 10.1111/mec.12396. Epub 2013 Jul 23.

PMID:
23875782
39.

Echovirus 1 entry into polarized Caco-2 cells depends on dynamin, cholesterol, and cellular factors associated with macropinocytosis.

Krieger SE, Kim C, Zhang L, Marjomaki V, Bergelson JM.

J Virol. 2013 Aug;87(16):8884-95. doi: 10.1128/JVI.03415-12. Epub 2013 Jun 5.

40.

Bacterial communities associated with the leaves and the roots of Arabidopsis thaliana.

Bodenhausen N, Horton MW, Bergelson J.

PLoS One. 2013;8(2):e56329. doi: 10.1371/journal.pone.0056329. Epub 2013 Feb 15.

42.

Echovirus 7 entry into polarized intestinal epithelial cells requires clathrin and Rab7.

Kim C, Bergelson JM.

MBio. 2012 Apr 10;3(2). pii: e00304-11. doi: 10.1128/mBio.00304-11. Print 2012.

43.

Diet creates metabolic niches in the "immature gut" that shape microbial communities.

Poroyko V, Morowitz M, Bell T, Ulanov A, Wang M, Donovan S, Bao N, Gu S, Hong L, Alverdy JC, Bergelson J, Liu DC.

Nutr Hosp. 2011 Nov-Dec;26(6):1283-95. doi: 10.1590/S0212-16112011000600015.

PMID:
22411374
44.

Flagellin perception varies quantitatively in Arabidopsis thaliana and its relatives.

Vetter MM, Kronholm I, He F, Häweker H, Reymond M, Bergelson J, Robatzek S, de Meaux J.

Mol Biol Evol. 2012 Jun;29(6):1655-67. doi: 10.1093/molbev/mss011. Epub 2012 Jan 16.

PMID:
22319159
45.

Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel.

Horton MW, Hancock AM, Huang YS, Toomajian C, Atwell S, Auton A, Muliyati NW, Platt A, Sperone FG, Vilhjálmsson BJ, Nordborg M, Borevitz JO, Bergelson J.

Nat Genet. 2012 Jan 8;44(2):212-6. doi: 10.1038/ng.1042.

46.

Adaptation to climate across the Arabidopsis thaliana genome.

Hancock AM, Brachi B, Faure N, Horton MW, Jarymowycz LB, Sperone FG, Toomajian C, Roux F, Bergelson J.

Science. 2011 Oct 7;334(6052):83-6. doi: 10.1126/science.1209244.

47.

Cheating, trade-offs and the evolution of aggressiveness in a natural pathogen population.

Barrett LG, Bell T, Dwyer G, Bergelson J.

Ecol Lett. 2011 Nov;14(11):1149-57. doi: 10.1111/j.1461-0248.2011.01687.x. Epub 2011 Sep 23.

48.

Calcium signals and calpain-dependent necrosis are essential for release of coxsackievirus B from polarized intestinal epithelial cells.

Bozym RA, Patel K, White C, Cheung KH, Bergelson JM, Morosky SA, Coyne CB.

Mol Biol Cell. 2011 Sep;22(17):3010-21. doi: 10.1091/mbc.E11-02-0094. Epub 2011 Jul 7.

49.

Analysis and visualization of Arabidopsis thaliana GWAS using web 2.0 technologies.

Huang YS, Horton M, Vilhjálmsson BJ, Seren U, Meng D, Meyer C, Ali Amer M, Borevitz JO, Bergelson J, Nordborg M.

Database (Oxford). 2011 May 23;2011:bar014. doi: 10.1093/database/bar014. Print 2011.

50.

Single amino acid changes in the virus capsid permit coxsackievirus B3 to bind decay-accelerating factor.

Pan J, Narayanan B, Shah S, Yoder JD, Cifuente JO, Hafenstein S, Bergelson JM.

J Virol. 2011 Jul;85(14):7436-43. doi: 10.1128/JVI.00503-11. Epub 2011 May 11.

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