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Items: 1 to 50 of 107

1.

Evolution of high-level resistance during low-level antibiotic exposure.

Wistrand-Yuen E, Knopp M, Hjort K, Koskiniemi S, Berg OG, Andersson DI.

Nat Commun. 2018 Apr 23;9(1):1599. doi: 10.1038/s41467-018-04059-1.

2.

Variation in Mutational Robustness between Different Proteins and the Predictability of Fitness Effects.

Lind PA, Arvidsson L, Berg OG, Andersson DI.

Mol Biol Evol. 2017 Feb 1;34(2):408-418. doi: 10.1093/molbev/msw239.

PMID:
28025272
3.

Quantification of transcription factor-DNA binding affinity in a living cell.

Belikov S, Berg OG, Wrange Ö.

Nucleic Acids Res. 2016 Apr 20;44(7):3045-58. doi: 10.1093/nar/gkv1350. Epub 2015 Dec 10.

4.

What matters for lac repressor search in vivo--sliding, hopping, intersegment transfer, crowding on DNA or recognition?

Mahmutovic A, Berg OG, Elf J.

Nucleic Acids Res. 2015 Apr 20;43(7):3454-64. doi: 10.1093/nar/gkv207. Epub 2015 Mar 16.

5.

High fitness costs and instability of gene duplications reduce rates of evolution of new genes by duplication-divergence mechanisms.

Adler M, Anjum M, Berg OG, Andersson DI, Sandegren L.

Mol Biol Evol. 2014 Jun;31(6):1526-35. doi: 10.1093/molbev/msu111. Epub 2014 Mar 22.

PMID:
24659815
6.

Transcription-factor binding and sliding on DNA studied using micro- and macroscopic models.

Marklund EG, Mahmutovic A, Berg OG, Hammar P, van der Spoel D, Fange D, Elf J.

Proc Natl Acad Sci U S A. 2013 Dec 3;110(49):19796-801. doi: 10.1073/pnas.1307905110. Epub 2013 Nov 12.

7.

Lost in presumption: stochastic reactions in spatial models.

Mahmutovic A, Fange D, Berg OG, Elf J.

Nat Methods. 2012 Dec;9(12):1163-6. doi: 10.1038/nmeth.2253.

PMID:
23223170
8.

Selection-driven gene loss in bacteria.

Koskiniemi S, Sun S, Berg OG, Andersson DI.

PLoS Genet. 2012 Jun;8(6):e1002787. doi: 10.1371/journal.pgen.1002787. Epub 2012 Jun 28.

9.

The lac repressor displays facilitated diffusion in living cells.

Hammar P, Leroy P, Mahmutovic A, Marklund EG, Berg OG, Elf J.

Science. 2012 Jun 22;336(6088):1595-8. doi: 10.1126/science.1221648.

10.

Selection of resistant bacteria at very low antibiotic concentrations.

Gullberg E, Cao S, Berg OG, Ilbäck C, Sandegren L, Hughes D, Andersson DI.

PLoS Pathog. 2011 Jul;7(7):e1002158. doi: 10.1371/journal.ppat.1002158. Epub 2011 Jul 21.

11.

Kick-starting the ratchet: the fate of mutators in an asexual population.

Söderberg RJ, Berg OG.

Genetics. 2011 Apr;187(4):1129-37. doi: 10.1534/genetics.110.124818. Epub 2011 Feb 1.

12.

Mutational robustness of ribosomal protein genes.

Lind PA, Berg OG, Andersson DI.

Science. 2010 Nov 5;330(6005):825-7. doi: 10.1126/science.1194617.

13.

Stochastic reaction-diffusion kinetics in the microscopic limit.

Fange D, Berg OG, Sjöberg P, Elf J.

Proc Natl Acad Sci U S A. 2010 Nov 16;107(46):19820-5. doi: 10.1073/pnas.1006565107. Epub 2010 Nov 1.

14.

Compensatory gene amplification restores fitness after inter-species gene replacements.

Lind PA, Tobin C, Berg OG, Kurland CG, Andersson DI.

Mol Microbiol. 2010 Mar;75(5):1078-89. doi: 10.1111/j.1365-2958.2009.07030.x. Epub 2010 Jan 18.

15.

Contribution of gene amplification to evolution of increased antibiotic resistance in Salmonella typhimurium.

Sun S, Berg OG, Roth JR, Andersson DI.

Genetics. 2009 Aug;182(4):1183-95. doi: 10.1534/genetics.109.103028. Epub 2009 May 27.

16.

Allosteric effect of amphiphile binding to phospholipase A(2).

Yu BZ, Bai S, Berg OG, Jain MK.

Biochemistry. 2009 Apr 14;48(14):3219-29. doi: 10.1021/bi801245s.

PMID:
19301848
17.

Thermodynamic reciprocity of the inhibitor binding to the active site and the interface binding region of IB phospholipase A2.

Berg OG, Yu BZ, Jain MK.

Biochemistry. 2009 Apr 14;48(14):3209-18. doi: 10.1021/bi801244u.

PMID:
19301847
18.

Deletion rate evolution and its effect on genome size and coding density.

Pettersson ME, Kurland CG, Berg OG.

Mol Biol Evol. 2009 Jun;26(6):1421-30. doi: 10.1093/molbev/msp054. Epub 2009 Mar 18.

PMID:
19295120
19.

Effect of guggulsterone and cembranoids of Commiphora mukul on pancreatic phospholipase A(2): role in hypocholesterolemia.

Yu BZ, Kaimal R, Bai S, El Sayed KA, Tatulian SA, Apitz RJ, Jain MK, Deng R, Berg OG.

J Nat Prod. 2009 Jan;72(1):24-8. doi: 10.1021/np8004453.

PMID:
19102680
20.

Evolution of new gene functions: simulation and analysis of the amplification model.

Pettersson ME, Sun S, Andersson DI, Berg OG.

Genetica. 2009 Apr;135(3):309-24. doi: 10.1007/s10709-008-9289-z. Epub 2008 Jun 22.

PMID:
18568430
21.

Contiguous binding of decylsulfate on the interface-binding surface of pancreatic phospholipase A2.

Bai S, Jain MK, Berg OG.

Biochemistry. 2008 Mar 4;47(9):2899-907. doi: 10.1021/bi702164n. Epub 2008 Feb 8.

PMID:
18260608
22.

The origins of modern proteomes.

Kurland CG, Canbäck B, Berg OG.

Biochimie. 2007 Dec;89(12):1454-63. Epub 2007 Sep 15.

PMID:
17949885
23.
24.

Role of 57-72 loop in the allosteric action of bile salts on pancreatic IB phospholipase A(2): regulation of fat and cholesterol homeostasis.

Yu BZ, Apitz-Castro RJ, Jain MK, Berg OG.

Biochim Biophys Acta. 2007 Oct;1768(10):2478-90. Epub 2007 May 26.

25.

Coupling of the i-face and the active site of phospholipase A2 for interfacial activation.

Jain MK, Berg OG.

Curr Opin Chem Biol. 2006 Oct;10(5):473-9. Epub 2006 Aug 30. Review.

PMID:
16938485
26.

Muller's ratchet in symbiont populations.

Pettersson ME, Berg OG.

Genetica. 2007 Jun;130(2):199-211. Epub 2006 Aug 22.

PMID:
16924405
27.

Reducing the fitness cost of antibiotic resistance by amplification of initiator tRNA genes.

Nilsson AI, Zorzet A, Kanth A, Dahlström S, Berg OG, Andersson DI.

Proc Natl Acad Sci U S A. 2006 May 2;103(18):6976-81. Epub 2006 Apr 24.

28.

Genomic buffering mitigates the effects of deleterious mutations in bacteria.

Maisnier-Patin S, Roth JR, Fredriksson A, Nyström T, Berg OG, Andersson DI.

Nat Genet. 2005 Dec;37(12):1376-9. Epub 2005 Nov 6.

PMID:
16273106
29.

Premicellar complexes of sphingomyelinase mediate enzyme exchange for the stationary phase turnover.

Yu BZ, Polenova T, Jain MK, Berg OG.

Biochim Biophys Acta. 2005 Jun 30;1712(2):137-51. Epub 2005 Apr 15.

30.

Experimental adaptation of Salmonella typhimurium to mice.

Nilsson AI, Kugelberg E, Berg OG, Andersson DI.

Genetics. 2004 Nov;168(3):1119-30.

31.

The amplification model for adaptive mutation: simulations and analysis.

Pettersson ME, Andersson DI, Roth JR, Berg OG.

Genetics. 2005 Feb;169(2):1105-15. Epub 2004 Oct 16.

32.

Origins of delays in monolayer kinetics: phospholipase A2 paradigm.

Cajal Y, Berg OG, Jain MK.

Biochemistry. 2004 Jul 20;43(28):9256-64.

PMID:
15248783
33.

Cooperative binding of monodisperse anionic amphiphiles to the i-face: phospholipase A2-paradigm for interfacial binding.

Berg OG, Yu BZ, Chang C, Koehler KA, Jain MK.

Biochemistry. 2004 Jun 29;43(25):7999-8013.

PMID:
15209495
34.

Phosphatidylinositol-specific phospholipase C forms different complexes with monodisperse and micellar phosphatidylcholine.

Berg OG, Yu BZ, Apitz-Castro RJ, Jain MK.

Biochemistry. 2004 Feb 24;43(7):2080-90.

PMID:
14967048
35.
36.

Biological costs and mechanisms of fosfomycin resistance in Escherichia coli.

Nilsson AI, Berg OG, Aspevall O, Kahlmeter G, Andersson DI.

Antimicrob Agents Chemother. 2003 Sep;47(9):2850-8.

37.
38.

Horizontal gene transfer: a critical view.

Kurland CG, Canback B, Berg OG.

Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9658-62. Epub 2003 Aug 5. Review.

39.

On the nature of gene innovation: duplication patterns in microbial genomes.

Hooper SD, Berg OG.

Mol Biol Evol. 2003 Jun;20(6):945-54. Epub 2003 Apr 25.

PMID:
12716994
40.

Regulating general mutation rates: examination of the hypermutable state model for Cairnsian adaptive mutation.

Roth JR, Kofoid E, Roth FP, Berg OG, Seger J, Andersson DI.

Genetics. 2003 Apr;163(4):1483-96.

41.

Near-critical phenomena in intracellular metabolite pools.

Elf J, Paulsson J, Berg OG, Ehrenberg M.

Biophys J. 2003 Jan;84(1):154-70.

42.
44.

Evolution of microbial genomes: sequence acquisition and loss.

Berg OG, Kurland CG.

Mol Biol Evol. 2002 Dec;19(12):2265-76.

PMID:
12446817
45.

Compensatory adaptation to the deleterious effect of antibiotic resistance in Salmonella typhimurium.

Maisnier-Patin S, Berg OG, Liljas L, Andersson DI.

Mol Microbiol. 2002 Oct;46(2):355-66.

46.

Eclipse period without sequestration in Escherichia coli.

Olsson J, Dasgupta S, Berg OG, Nordström K.

Mol Microbiol. 2002 Jun;44(6):1429-40.

47.

Detection of genes with atypical nucleotide sequence in microbial genomes.

Hooper SD, Berg OG.

J Mol Evol. 2002 Mar;54(3):365-75.

PMID:
11847562
48.

Interfacial enzymology: the secreted phospholipase A(2)-paradigm.

Berg OG, Gelb MH, Tsai MD, Jain MK.

Chem Rev. 2001 Sep;101(9):2613-54. Review. No abstract available.

PMID:
11749391
49.

Mutation frequency and biological cost of antibiotic resistance in Helicobacter pylori.

Björkholm B, Sjölund M, Falk PG, Berg OG, Engstrand L, Andersson DI.

Proc Natl Acad Sci U S A. 2001 Dec 4;98(25):14607-12. Epub 2001 Nov 20.

50.

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