Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 255

1.

Recombination-independent rapid convergent evolution of the gastric pathogen Helicobacter pylori.

Chattopadhyay S, Chi PB, Minin VN, Berg DE, Sokurenko EV.

BMC Genomics. 2018 Nov 21;19(1):835. doi: 10.1186/s12864-018-5231-7.

2.

Early detection of gastric cancer using global, genome-wide and IRF4, ELMO1, CLIP4 and MSC DNA methylation in endoscopic biopsies.

Pirini F, Noazin S, Jahuira-Arias MH, Rodriguez-Torres S, Friess L, Michailidi C, Cok J, Combe J, Vargas G, Prado W, Soudry E, Pérez J, Yudin T, Mancinelli A, Unger H, Ili-Gangas C, Brebi-Mieville P, Berg DE, Hayashi M, Sidransky D, Gilman RH, Guerrero-Preston R.

Oncotarget. 2017 Jun 13;8(24):38501-38516. doi: 10.18632/oncotarget.16258.

3.

Population genetics of immune-related multilocus copy number variation in Native Americans.

Zuccherato LW, Schneider S, Tarazona-Santos E, Hardwick RJ, Berg DE, Bogle H, Gouveia MH, Machado LR, Machado M, Rodrigues-Soares F, Soares-Souza GB, Togni DL, Zamudio R, Gilman RH, Duarte D, Hollox EJ, Rodrigues MR.

J R Soc Interface. 2017 Mar;14(128). pii: 20170057. doi: 10.1098/rsif.2017.0057.

4.

Helicobacter pylori Adapts to Chronic Infection and Gastric Disease via pH-Responsive BabA-Mediated Adherence.

Bugaytsova JA, Björnham O, Chernov YA, Gideonsson P, Henriksson S, Mendez M, Sjöström R, Mahdavi J, Shevtsova A, Ilver D, Moonens K, Quintana-Hayashi MP, Moskalenko R, Aisenbrey C, Bylund G, Schmidt A, Åberg A, Brännström K, Königer V, Vikström S, Rakhimova L, Hofer A, Ögren J, Liu H, Goldman MD, Whitmire JM, Ådén J, Younson J, Kelly CG, Gilman RH, Chowdhury A, Mukhopadhyay AK, Nair GB, Papadakos KS, Martinez-Gonzalez B, Sgouras DN, Engstrand L, Unemo M, Danielsson D, Suerbaum S, Oscarson S, Morozova-Roche LA, Olofsson A, Gröbner G, Holgersson J, Esberg A, Strömberg N, Landström M, Eldridge AM, Chromy BA, Hansen LM, Solnick JV, Lindén SK, Haas R, Dubois A, Merrell DS, Schedin S, Remaut H, Arnqvist A, Berg DE, Borén T.

Cell Host Microbe. 2017 Mar 8;21(3):376-389. doi: 10.1016/j.chom.2017.02.013.

5.

Julian Davies and the discovery of kanamycin resistance transposon Tn5.

Berg DE.

J Antibiot (Tokyo). 2017 Apr;70(4):339-346. doi: 10.1038/ja.2016.120. Epub 2016 Oct 12. Review.

PMID:
27731334
6.

Grete Kellenberger-Gujer: Molecular biology research pioneer.

Citi S, Berg DE.

Bacteriophage. 2016 Apr 5;6(2):e1148805. doi: 10.1080/21597081.2016.1173168. eCollection 2016 Apr-Jun.

7.

Interconnected microbiomes and resistomes in low-income human habitats.

Pehrsson EC, Tsukayama P, Patel S, Mejía-Bautista M, Sosa-Soto G, Navarrete KM, Calderon M, Cabrera L, Hoyos-Arango W, Bertoli MT, Berg DE, Gilman RH, Dantas G.

Nature. 2016 May 12;533(7602):212-6. doi: 10.1038/nature17672.

8.

What Makes a Bacterial Species Pathogenic?:Comparative Genomic Analysis of the Genus Leptospira.

Fouts DE, Matthias MA, Adhikarla H, Adler B, Amorim-Santos L, Berg DE, Bulach D, Buschiazzo A, Chang YF, Galloway RL, Haake DA, Haft DH, Hartskeerl R, Ko AI, Levett PN, Matsunaga J, Mechaly AE, Monk JM, Nascimento AL, Nelson KE, Palsson B, Peacock SJ, Picardeau M, Ricaldi JN, Thaipandungpanit J, Wunder EA Jr, Yang XF, Zhang JJ, Vinetz JM.

PLoS Negl Trop Dis. 2016 Feb 18;10(2):e0004403. doi: 10.1371/journal.pntd.0004403. eCollection 2016 Feb.

9.

Structural Insights into Polymorphic ABO Glycan Binding by Helicobacter pylori.

Moonens K, Gideonsson P, Subedi S, Bugaytsova J, Romaõ E, Mendez M, Nordén J, Fallah M, Rakhimova L, Shevtsova A, Lahmann M, Castaldo G, Brännström K, Coppens F, Lo AW, Ny T, Solnick JV, Vandenbussche G, Oscarson S, Hammarström L, Arnqvist A, Berg DE, Muyldermans S, Borén T, Remaut H.

Cell Host Microbe. 2016 Jan 13;19(1):55-66. doi: 10.1016/j.chom.2015.12.004.

10.

Population, Epidemiological, and Functional Genetics of Gastric Cancer Candidate Genes in Peruvians with Predominant Amerindian Ancestry.

Zamudio R, Pereira L, Rocha CD, Berg DE, Muniz-Queiroz T, Sant Anna HP, Cabrera L, Combe JM, Herrera P, Jahuira MH, Leão FB, Lyon F, Prado WA, Rodrigues MR, Rodrigues-Soares F, Santolalla ML, Zolini C, Silva AM, Gilman RH, Tarazona-Santos E, Kehdy FS.

Dig Dis Sci. 2016 Jan;61(1):107-16. doi: 10.1007/s10620-015-3859-6. Epub 2015 Sep 21. Review.

PMID:
26391267
11.

Origin and dynamics of admixture in Brazilians and its effect on the pattern of deleterious mutations.

Kehdy FS, Gouveia MH, Machado M, Magalhães WC, Horimoto AR, Horta BL, Moreira RG, Leal TP, Scliar MO, Soares-Souza GB, Rodrigues-Soares F, Araújo GS, Zamudio R, Sant Anna HP, Santos HC, Duarte NE, Fiaccone RL, Figueiredo CA, Silva TM, Costa GN, Beleza S, Berg DE, Cabrera L, Debortoli G, Duarte D, Ghirotto S, Gilman RH, Gonçalves VF, Marrero AR, Muniz YC, Weissensteiner H, Yeager M, Rodrigues LC, Barreto ML, Lima-Costa MF, Pereira AC, Rodrigues MR, Tarazona-Santos E; Brazilian EPIGEN Project Consortium.

Proc Natl Acad Sci U S A. 2015 Jul 14;112(28):8696-701. doi: 10.1073/pnas.1504447112. Epub 2015 Jun 29.

12.

Complete Genome Sequences of Two Helicobacter pylori Strains from a Canadian Arctic Aboriginal Community.

Kersulyte D, Bertoli MT, Tamma S, Keelan M, Munday R, Geary J, Veldhuyzen van Zanten S, Goodman KJ, Berg DE.

Genome Announc. 2015 Apr 16;3(2). pii: e00209-15. doi: 10.1128/genomeA.00209-15.

13.

Population genetic analyses of Helicobacter pylori isolates from Gambian adults and children.

Secka O, Moodley Y, Antonio M, Berg DE, Tapgun M, Walton R, Worwui A, Thomas V, Corrah T, Thomas JE, Adegbola RA.

PLoS One. 2014 Oct 13;9(10):e109466. doi: 10.1371/journal.pone.0109466. eCollection 2014.

14.

Bayesian inferences suggest that Amazon Yunga Natives diverged from Andeans less than 5000 ybp: implications for South American prehistory.

Scliar MO, Gouveia MH, Benazzo A, Ghirotto S, Fagundes NJ, Leal TP, Magalhães WC, Pereira L, Rodrigues MR, Soares-Souza GB, Cabrera L, Berg DE, Gilman RH, Bertorelle G, Tarazona-Santos E.

BMC Evol Biol. 2014 Sep 30;14:174. doi: 10.1186/s12862-014-0174-3.

15.

Systematic analysis of phosphotyrosine antibodies recognizing single phosphorylated EPIYA-motifs in CagA of Western-type Helicobacter pylori strains.

Lind J, Backert S, Pfleiderer K, Berg DE, Yamaoka Y, Sticht H, Tegtmeyer N.

PLoS One. 2014 May 6;9(5):e96488. doi: 10.1371/journal.pone.0096488. eCollection 2014.

16.

Sequence divergence and conservation in genomes of Helicobacter cetorum strains from a dolphin and a whale.

Kersulyte D, Rossi M, Berg DE.

PLoS One. 2013 Dec 17;8(12):e83177. doi: 10.1371/journal.pone.0083177. eCollection 2013.

17.

Expanded therapeutic potential in activity space of next-generation 5-nitroimidazole antimicrobials with broad structural diversity.

Miyamoto Y, Kalisiak J, Korthals K, Lauwaet T, Cheung DY, Lozano R, Cobo ER, Upcroft P, Upcroft JA, Berg DE, Gillin FD, Fokin VV, Sharpless KB, Eckmann L.

Proc Natl Acad Sci U S A. 2013 Oct 22;110(43):17564-9. doi: 10.1073/pnas.1302664110. Epub 2013 Oct 7.

18.

Genome Sequences of Three hpAfrica2 Strains of Helicobacter pylori.

Duncan SS, Bertoli MT, Kersulyte D, Valk PL, Tamma S, Segal I, McClain MS, Cover TL, Berg DE.

Genome Announc. 2013 Sep 26;1(5). pii: e00729-13. doi: 10.1128/genomeA.00729-13.

19.

Electron microscopic, genetic and protein expression analyses of Helicobacter acinonychis strains from a Bengal tiger.

Tegtmeyer N, Rivas Traverso F, Rohde M, Oyarzabal OA, Lehn N, Schneider-Brachert W, Ferrero RL, Fox JG, Berg DE, Backert S.

PLoS One. 2013 Aug 5;8(8):e71220. doi: 10.1371/journal.pone.0071220. Print 2013.

20.

Robustness of Helicobacter pylori infection conferred by context-variable redundancy among cysteine-rich paralogs.

Putty K, Marcus SA, Mittl PR, Bogadi LE, Hunter AM, Arur S, Berg DE, Sethu P, Kalia A.

PLoS One. 2013;8(3):e59560. doi: 10.1371/journal.pone.0059560. Epub 2013 Mar 26.

21.

Antimicrobial susceptibility and resistance patterns among Helicobacter pylori strains from The Gambia, West Africa.

Secka O, Berg DE, Antonio M, Corrah T, Tapgun M, Walton R, Thomas V, Galano JJ, Sancho J, Adegbola RA, Thomas JE.

Antimicrob Agents Chemother. 2013 Mar;57(3):1231-7. doi: 10.1128/AAC.00517-12. Epub 2012 Dec 21.

22.

Evaluation of hospital mass screening and infection control practices in a pandemic influenza full-scale exercise.

Kohlhoff SA, Crouch B, Roblin PM, Fertel B, Pruitt D, Berg DE, Weedon J, Arquilla B, Augenbraun M.

Disaster Med Public Health Prep. 2012 Dec;6(4):378-84. doi: 10.1001/dmp.2012.73.

PMID:
23241469
23.

Socioeconomic and nutritional factors account for the association of gastric cancer with Amerindian ancestry in a Latin American admixed population.

Pereira L, Zamudio R, Soares-Souza G, Herrera P, Cabrera L, Hooper CC, Cok J, Combe JM, Vargas G, Prado WA, Schneider S, Kehdy F, Rodrigues MR, Chanock SJ, Berg DE, Gilman RH, Tarazona-Santos E.

PLoS One. 2012;7(8):e41200. doi: 10.1371/journal.pone.0041200. Epub 2012 Aug 3.

24.

Distinct repeat motifs at the C-terminal region of CagA of Helicobacter pylori strains isolated from diseased patients and asymptomatic individuals in West Bengal, India.

Chattopadhyay S, Patra R, Chatterjee R, De R, Alam J, Ramamurthy T, Chowdhury A, Nair GB, Berg DE, Mukhopadhyay AK.

Gut Pathog. 2012 May 25;4(1):4. doi: 10.1186/1757-4749-4-4.

25.

Xer recombinase and genome integrity in Helicobacter pylori, a pathogen without topoisomerase IV.

Debowski AW, Carnoy C, Verbrugghe P, Nilsson HO, Gauntlett JC, Fulurija A, Camilleri T, Berg DE, Marshall BJ, Benghezal M.

PLoS One. 2012;7(4):e33310. doi: 10.1371/journal.pone.0033310. Epub 2012 Apr 12. Erratum in: PLoS One. 2012;7(7): 10.1371/annotation/f5629404-e0e6-4cc1-9d76-ab16238a48c0.

26.

Mixed infection with cagA positive and cagA negative strains of Helicobacter pylori lowers disease burden in The Gambia.

Secka O, Antonio M, Berg DE, Tapgun M, Bottomley C, Thomas V, Walton R, Corrah T, Thomas JE, Adegbola RA.

PLoS One. 2011;6(11):e27954. doi: 10.1371/journal.pone.0027954. Epub 2011 Nov 29.

27.

Helicobacter pylori genotyping from American indigenous groups shows novel Amerindian vacA and cagA alleles and Asian, African and European admixture.

Camorlinga-Ponce M, Perez-Perez G, Gonzalez-Valencia G, Mendoza I, Peñaloza-Espinosa R, Ramos I, Kersulyte D, Reyes-Leon A, Romo C, Granados J, Muñoz L, Berg DE, Torres J.

PLoS One. 2011;6(11):e27212. doi: 10.1371/journal.pone.0027212. Epub 2011 Nov 3.

28.

Attenuated CagA oncoprotein in Helicobacter pylori from Amerindians in Peruvian Amazon.

Suzuki M, Kiga K, Kersulyte D, Cok J, Hooper CC, Mimuro H, Sanada T, Suzuki S, Oyama M, Kozuka-Hata H, Kamiya S, Zou QM, Gilman RH, Berg DE, Sasakawa C.

J Biol Chem. 2011 Aug 26;286(34):29964-72. doi: 10.1074/jbc.M111.263715. Epub 2011 Jul 8.

29.

PCR-based genotyping of Helicobacter pylori of Gambian children and adults directly from biopsy specimens and bacterial cultures.

Secka O, Antonio M, Tapgun M, Berg DE, Bottomley C, Thomas V, Walton R, Corrah T, Adegbola RA, Thomas JE.

Gut Pathog. 2011 Apr 20;3(1):5. doi: 10.1186/1757-4749-3-5.

30.
31.

A worldwide analysis of beta-defensin copy number variation suggests recent selection of a high-expressing DEFB103 gene copy in East Asia.

Hardwick RJ, Machado LR, Zuccherato LW, Antolinos S, Xue Y, Shawa N, Gilman RH, Cabrera L, Berg DE, Tyler-Smith C, Kelly P, Tarazona-Santos E, Hollox EJ.

Hum Mutat. 2011 Jul;32(7):743-50. doi: 10.1002/humu.21491. Epub 2011 May 5.

32.

Intact cag pathogenicity island of Helicobacter pylori without disease association in Kolkata, India.

Patra R, Chattopadhyay S, De R, Datta S, Chowdhury A, Ramamurthy T, Nair GB, Berg DE, Mukhopadhyay AK.

Int J Med Microbiol. 2011 Apr;301(4):293-302. doi: 10.1016/j.ijmm.2010.10.003. Epub 2010 Dec 30.

33.

Helicobacter pylori from Peruvian amerindians: traces of human migrations in strains from remote Amazon, and genome sequence of an Amerind strain.

Kersulyte D, Kalia A, Gilman RH, Mendez M, Herrera P, Cabrera L, Velapatiño B, Balqui J, Paredes Puente de la Vega F, Rodriguez Ulloa CA, Cok J, Hooper CC, Dailide G, Tamma S, Berg DE.

PLoS One. 2010 Nov 29;5(11):e15076. doi: 10.1371/journal.pone.0015076.

34.

Surface properties of Helicobacter pylori urease complex are essential for persistence.

Schoep TD, Fulurija A, Good F, Lu W, Himbeck RP, Schwan C, Choi SS, Berg DE, Mittl PR, Benghezal M, Marshall BJ.

PLoS One. 2010 Nov 29;5(11):e15042. doi: 10.1371/journal.pone.0015042.

35.

Expression of the BabA adhesin during experimental infection with Helicobacter pylori.

Styer CM, Hansen LM, Cooke CL, Gundersen AM, Choi SS, Berg DE, Benghezal M, Marshall BJ, Peek RM Jr, Borén T, Solnick JV.

Infect Immun. 2010 Apr;78(4):1593-600. doi: 10.1128/IAI.01297-09. Epub 2010 Feb 1.

36.

Interleukin-1 beta single-nucleotide polymorphism's C allele is associated with elevated risk of gastric cancer in Helicobacter pylori-infected Peruvians.

Gehmert S, Velapatiño B, Herrera P, Balqui J, Santivañez L, Cok J, Vargas G, Combe J, Passaro DJ, Wen S, Meyer F, Berg DE, Gilman RH.

Am J Trop Med Hyg. 2009 Nov;81(5):804-10. doi: 10.4269/ajtmh.2009.08-0494.

37.

Helicobacter Pylori's plasticity zones are novel transposable elements.

Kersulyte D, Lee W, Subramaniam D, Anant S, Herrera P, Cabrera L, Balqui J, Barabas O, Kalia A, Gilman RH, Berg DE.

PLoS One. 2009 Sep 3;4(9):e6859. doi: 10.1371/journal.pone.0006859.

38.

The secreted Helicobacter cysteine-rich protein A causes adherence of human monocytes and differentiation into a macrophage-like phenotype.

Dumrese C, Slomianka L, Ziegler U, Choi SS, Kalia A, Fulurija A, Lu W, Berg DE, Benghezal M, Marshall B, Mittl PR.

FEBS Lett. 2009 May 19;583(10):1637-43. doi: 10.1016/j.febslet.2009.04.027. Epub 2009 Apr 24.

39.

Helicobacter pylori CagA phosphorylation-independent function in epithelial proliferation and inflammation.

Suzuki M, Mimuro H, Kiga K, Fukumatsu M, Ishijima N, Morikawa H, Nagai S, Koyasu S, Gilman RH, Kersulyte D, Berg DE, Sasakawa C.

Cell Host Microbe. 2009 Jan 22;5(1):23-34. doi: 10.1016/j.chom.2008.11.010.

40.

DNA-level diversity and relatedness of Helicobacter pylori strains in shantytown families in Peru and transmission in a developing-country setting.

Herrera PM, Mendez M, Velapatiño B, Santivañez L, Balqui J, Finger SA, Sherman J, Zimic M, Cabrera L, Watanabe J, Rodríguez C, Gilman RH, Berg DE.

J Clin Microbiol. 2008 Dec;46(12):3912-8. doi: 10.1128/JCM.01453-08. Epub 2008 Oct 8. Erratum in: J Clin Microbiol. 2009 Mar;47(3):874.. Velapatio, Billie [corrected to Velapatiño, Billie]; Santivaez, Livia [corrected to Santivañez,Livia].

41.

Isolation of tetracycline-resistant clinical Helicobacter pylori without mutations in 16S rRNA gene in Bangladesh.

Khan R, Nahar S, Mukhopadhyay AK, Berg DE, Ahmad MM, Okamoto K, Nair GB, Rahman M.

Microbiol Immunol. 2008 Oct;52(10):508-11. doi: 10.1111/j.1348-0421.2008.00062.x.

42.

Revised nomenclature for transposable genetic elements.

Roberts AP, Chandler M, Courvalin P, Guédon G, Mullany P, Pembroke T, Rood JI, Smith CJ, Summers AO, Tsuda M, Berg DE.

Plasmid. 2008 Nov;60(3):167-73. doi: 10.1016/j.plasmid.2008.08.001. Epub 2008 Sep 26. Review.

43.

Control of epithelial cell structure and developmental fate: lessons from Helicobacter pylori.

Mimuro H, Berg DE, Sasakawa C.

Bioessays. 2008 Jun;30(6):515-20. doi: 10.1002/bies.20768. Review.

PMID:
18478526
44.

Gastrin-mediated interleukin-8 and cyclooxygenase-2 gene expression: differential transcriptional and posttranscriptional mechanisms.

Subramaniam D, Ramalingam S, May R, Dieckgraefe BK, Berg DE, Pothoulakis C, Houchen CW, Wang TC, Anant S.

Gastroenterology. 2008 Apr;134(4):1070-82. doi: 10.1053/j.gastro.2008.01.040. Epub 2008 Jan 18.

PMID:
18395088
45.

Helicobacter pylori evolution: lineage- specific adaptations in homologs of eukaryotic Sel1-like genes.

Ogura M, Perez JC, Mittl PR, Lee HK, Dailide G, Tan S, Ito Y, Secka O, Dailidiene D, Putty K, Berg DE, Kalia A.

PLoS Comput Biol. 2007 Aug;3(8):e151. Epub 2007 Jun 19.

46.

Urea sensitization caused by separation of Helicobacter pylori RNA polymerase beta and beta' subunits.

Dailidiene D, Tan S, Ogura K, Zhang M, Lee AH, Severinov K, Berg DE.

Helicobacter. 2007 Apr;12(2):103-11.

PMID:
17309746
47.

Helicobacter pylori adhesion to carbohydrates.

Aspholm M, Kalia A, Ruhl S, Schedin S, Arnqvist A, Lindén S, Sjöström R, Gerhard M, Semino-Mora C, Dubois A, Unemo M, Danielsson D, Teneberg S, Lee WK, Berg DE, Borén T.

Methods Enzymol. 2006;417:293-339. Review.

48.

Alaska sentinel surveillance for antimicrobial resistance in Helicobacter pylori isolates from Alaska native persons, 1999-2003.

Bruce MG, Bruden DL, McMahon BJ, Hennessy TW, Reasonover A, Morris J, Hurlburt DA, Peters H, Sacco F, Martinez P, Swenson M, Berg DE, Parks D, Parkinson AJ.

Helicobacter. 2006 Dec;11(6):581-8.

PMID:
17083381
49.

Cag pathogenicity island-independent up-regulation of matrix metalloproteinases-9 and -2 secretion and expression in mice by Helicobacter pylori infection.

Kundu P, Mukhopadhyay AK, Patra R, Banerjee A, Berg DE, Swarnakar S.

J Biol Chem. 2006 Nov 10;281(45):34651-62. Epub 2006 Sep 11.

50.

Contraselectable streptomycin susceptibility determinant for genetic manipulation and analysis of Helicobacter pylori.

Dailidiene D, Dailide G, Kersulyte D, Berg DE.

Appl Environ Microbiol. 2006 Sep;72(9):5908-14.

Supplemental Content

Support Center