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Items: 48

1.

Integrated analysis of population genomics, transcriptomics and virulence provides novel insights into Streptococcus pyogenes pathogenesis.

Kachroo P, Eraso JM, Beres SB, Olsen RJ, Zhu L, Nasser W, Bernard PE, Cantu CC, Saavedra MO, Arredondo MJ, Strope B, Do H, Kumaraswami M, Vuopio J, Gröndahl-Yli-Hannuksela K, Kristinsson KG, Gottfredsson M, Pesonen M, Pensar J, Davenport ER, Clark AG, Corander J, Caugant DA, Gaini S, Magnussen MD, Kubiak SL, Nguyen HAT, Long SW, Porter AR, DeLeo FR, Musser JM.

Nat Genet. 2019 Mar;51(3):548-559. doi: 10.1038/s41588-018-0343-1. Epub 2019 Feb 18.

PMID:
30778225
2.

Gene fitness landscape of group A streptococcus during necrotizing myositis.

Zhu L, Olsen RJ, Beres SB, Eraso JM, Saavedra MO, Kubiak SL, Cantu CC, Jenkins L, Charbonneau ARL, Waller AS, Musser JM.

J Clin Invest. 2019 Feb 1;129(2):887-901. doi: 10.1172/JCI124994. Epub 2019 Jan 22.

3.

RocA Has Serotype-Specific Gene Regulatory and Pathogenesis Activities in Serotype M28 Group A Streptococcus.

Bernard PE, Kachroo P, Zhu L, Beres SB, Eraso JM, Kajani Z, Long SW, Musser JM, Olsen RJ.

Infect Immun. 2018 Oct 25;86(11). pii: e00467-18. doi: 10.1128/IAI.00467-18. Print 2018 Nov.

4.

Postpartum Group A Streptococcus Case Series: Reach Out to Infection Prevention!

Alexander AJ, Myers C, Beres SB, Olsen RJ, Musser JM, Mangino JE.

Open Forum Infect Dis. 2018 Jul 2;5(7):ofy159. doi: 10.1093/ofid/ofy159. eCollection 2018 Jul.

5.

Novel Genes Required for the Fitness of Streptococcus pyogenes in Human Saliva.

Zhu L, Charbonneau ARL, Waller AS, Olsen RJ, Beres SB, Musser JM.

mSphere. 2017 Nov 1;2(6). pii: e00460-17. doi: 10.1128/mSphereDirect.00460-17. eCollection 2017 Nov-Dec.

6.

Genome sequence analysis of emm89 Streptococcus pyogenes strains causing infections in Scotland, 2010-2016.

Beres SB, Olsen RJ, Ojeda Saavedra M, Ure R, Reynolds A, Lindsay DSJ, Smith AJ, Musser JM.

J Med Microbiol. 2017 Dec;66(12):1765-1773. doi: 10.1099/jmm.0.000622. Epub 2017 Nov 3.

7.

Population Genomic Analysis of 1,777 Extended-Spectrum Beta-Lactamase-Producing Klebsiella pneumoniae Isolates, Houston, Texas: Unexpected Abundance of Clonal Group 307.

Long SW, Olsen RJ, Eagar TN, Beres SB, Zhao P, Davis JJ, Brettin T, Xia F, Musser JM.

MBio. 2017 May 16;8(3). pii: e00489-17. doi: 10.1128/mBio.00489-17.

8.

Rapid Emergence of a New Clone Impacts the Population at Risk and Increases the Incidence of Type emm89 Group A Streptococcus Invasive Disease.

Teatero S, Coleman BL, Beres SB, Olsen RJ, Kandel C, Reynolds O, Athey TBT, Musser JM, McGeer A, Fittipaldi N.

Open Forum Infect Dis. 2017 Mar 4;4(2):ofx042. doi: 10.1093/ofid/ofx042. eCollection 2017 Spring.

9.

Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis.

Skwark MJ, Croucher NJ, Puranen S, Chewapreecha C, Pesonen M, Xu YY, Turner P, Harris SR, Beres SB, Musser JM, Parkhill J, Bentley SD, Aurell E, Corander J.

PLoS Genet. 2017 Feb 16;13(2):e1006508. doi: 10.1371/journal.pgen.1006508. eCollection 2017 Feb.

10.

Genomic Characteristics Behind the Spread of Bacteremic Group A Streptococcus Type emm89 in Finland, 2004-2014.

Latronico F, Nasser W, Puhakainen K, Ollgren J, Hyyryläinen HL, Beres SB, Lyytikäinen O, Jalava J, Musser JM, Vuopio J.

J Infect Dis. 2016 Dec 15;214(12):1987-1995. Epub 2016 Oct 5.

11.

Genomic Landscape of Intrahost Variation in Group A Streptococcus: Repeated and Abundant Mutational Inactivation of the fabT Gene Encoding a Regulator of Fatty Acid Synthesis.

Eraso JM, Olsen RJ, Beres SB, Kachroo P, Porter AR, Nasser W, Bernard PE, DeLeo FR, Musser JM.

Infect Immun. 2016 Nov 18;84(12):3268-3281. Print 2016 Dec.

12.

Transcriptome Remodeling Contributes to Epidemic Disease Caused by the Human Pathogen Streptococcus pyogenes.

Beres SB, Kachroo P, Nasser W, Olsen RJ, Zhu L, Flores AR, de la Riva I, Paez-Mayorga J, Jimenez FE, Cantu C, Vuopio J, Jalava J, Kristinsson KG, Gottfredsson M, Corander J, Fittipaldi N, Di Luca MC, Petrelli D, Vitali LA, Raiford A, Jenkins L, Musser JM.

MBio. 2016 May 31;7(3). pii: e00403-16. doi: 10.1128/mBio.00403-16.

13.

The majority of 9,729 group A streptococcus strains causing disease secrete SpeB cysteine protease: pathogenesis implications.

Olsen RJ, Raghuram A, Cantu C, Hartman MH, Jimenez FE, Lee S, Ngo A, Rice KA, Saddington D, Spillman H, Valson C, Flores AR, Beres SB, Long SW, Nasser W, Musser JM.

Infect Immun. 2015 Dec;83(12):4750-8. doi: 10.1128/IAI.00989-15. Epub 2015 Sep 28.

14.

A molecular trigger for intercontinental epidemics of group A Streptococcus.

Zhu L, Olsen RJ, Nasser W, Beres SB, Vuopio J, Kristinsson KG, Gottfredsson M, Porter AR, DeLeo FR, Musser JM.

J Clin Invest. 2015 Sep;125(9):3545-59. doi: 10.1172/JCI82478. Epub 2015 Aug 10.

15.

Comparative whole genome sequencing of community-associated methicillin-resistant Staphylococcus aureus sequence type 8 from primary care clinics in a Texas community.

Lee GC, Long SW, Musser JM, Beres SB, Olsen RJ, Dallas SD, Nunez YO, Frei CR.

Pharmacotherapy. 2015 Feb;35(2):220-8. doi: 10.1002/phar.1536. Epub 2015 Feb 3.

PMID:
25644979
16.

Absence of patient-to-patient intrahospital transmission of Staphylococcus aureus as determined by whole-genome sequencing.

Long SW, Beres SB, Olsen RJ, Musser JM.

MBio. 2014 Oct 7;5(5):e01692-14. doi: 10.1128/mBio.01692-14.

17.

Clinical laboratory response to a mock outbreak of invasive bacterial infections: a preparedness study.

Olsen RJ, Fittipaldi N, Kachroo P, Sanson MA, Long SW, Como-Sabetti KJ, Valson C, Cantu C, Lynfield R, Van Beneden C, Beres SB, Musser JM.

J Clin Microbiol. 2014 Dec;52(12):4210-6. doi: 10.1128/JCM.02164-14. Epub 2014 Sep 24.

18.

Asymptomatic carriage of group A streptococcus is associated with elimination of capsule production.

Flores AR, Jewell BE, Olsen RJ, Shelburne SA 3rd, Fittipaldi N, Beres SB, Musser JM.

Infect Immun. 2014 Sep;82(9):3958-67. doi: 10.1128/IAI.01788-14. Epub 2014 Jul 14.

19.

Evolutionary pathway to increased virulence and epidemic group A Streptococcus disease derived from 3,615 genome sequences.

Nasser W, Beres SB, Olsen RJ, Dean MA, Rice KA, Long SW, Kristinsson KG, Gottfredsson M, Vuopio J, Raisanen K, Caugant DA, Steinbakk M, Low DE, McGeer A, Darenberg J, Henriques-Normark B, Van Beneden CA, Hoffmann S, Musser JM.

Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):E1768-76. doi: 10.1073/pnas.1403138111. Epub 2014 Apr 14.

20.

Natural disruption of two regulatory networks in serotype M3 group A Streptococcus isolates contributes to the virulence factor profile of this hypervirulent serotype.

Cao TN, Liu Z, Cao TH, Pflughoeft KJ, Treviño J, Danger JL, Beres SB, Musser JM, Sumby P.

Infect Immun. 2014 May;82(5):1744-54. doi: 10.1128/IAI.01639-13. Epub 2014 Feb 10.

21.

High-throughput RNA sequencing of a formalin-fixed, paraffin-embedded autopsy lung tissue sample from the 1918 influenza pandemic.

Xiao YL, Kash JC, Beres SB, Sheng ZM, Musser JM, Taubenberger JK.

J Pathol. 2013 Mar;229(4):535-45. doi: 10.1002/path.4145.

22.

Human disease isolates of serotype m4 and m22 group a streptococcus lack genes required for hyaluronic acid capsule biosynthesis.

Flores AR, Jewell BE, Fittipaldi N, Beres SB, Musser JM.

MBio. 2012 Nov 6;3(6):e00413-12. doi: 10.1128/mBio.00413-12. Review.

23.

Genomic analysis of emm59 group A Streptococcus invasive strains, United States.

Fittipaldi N, Olsen RJ, Beres SB, Van Beneden C, Musser JM.

Emerg Infect Dis. 2012 Apr;18(4):650-2. doi: 10.3201/eid1804.111803.

24.

Full-genome dissection of an epidemic of severe invasive disease caused by a hypervirulent, recently emerged clone of group A Streptococcus.

Fittipaldi N, Beres SB, Olsen RJ, Kapur V, Shea PR, Watkins ME, Cantu CC, Laucirica DR, Jenkins L, Flores AR, Lovgren M, Ardanuy C, Liñares J, Low DE, Tyrrell GJ, Musser JM.

Am J Pathol. 2012 Apr;180(4):1522-34. doi: 10.1016/j.ajpath.2011.12.037. Epub 2012 Feb 11.

PMID:
22330677
25.

Polymorphisms in regulator of protease B (RopB) alter disease phenotype and strain virulence of serotype M3 group A Streptococcus.

Olsen RJ, Laucirica DR, Watkins ME, Feske ML, Garcia-Bustillos JR, Vu C, Cantu C, Shelburne SA 3rd, Fittipaldi N, Kumaraswami M, Shea PR, Flores AR, Beres SB, Lovgren M, Tyrrell GJ, Efstratiou A, Low DE, Van Beneden CA, Musser JM.

J Infect Dis. 2012 Jun;205(11):1719-29. doi: 10.1093/infdis/jir825. Epub 2012 Jan 18.

26.

Group A Streptococcus emm gene types in pharyngeal isolates, Ontario, Canada, 2002-2010.

Shea PR, Ewbank AL, Gonzalez-Lugo JH, Martagon-Rosado AJ, Martinez-Gutierrez JC, Rehman HA, Serrano-Gonzalez M, Fittipaldi N, Beres SB, Flores AR, Low DE, Willey BM, Musser JM.

Emerg Infect Dis. 2011 Nov;17(11):2010-7. doi: 10.3201/eid1711.110159.

27.

Evolution of diversity in epidemics revealed by analysis of the human bacterial pathogen group A Streptococcus.

Carroll RK, Beres SB, Sitkiewicz I, Peterson L, Matsunami RK, Engler DA, Flores AR, Sumby P, Musser JM.

Epidemics. 2011 Sep;3(3-4):159-70. doi: 10.1016/j.epidem.2011.07.001. Epub 2011 Aug 5.

PMID:
22094339
28.

Rapidly progressive, fatal, inhalation anthrax-like infection in a human: case report, pathogen genome sequencing, pathology, and coordinated response.

Wright AM, Beres SB, Consamus EN, Long SW, Flores AR, Barrios R, Richter GS, Oh SY, Garufi G, Maier H, Drews AL, Stockbauer KE, Cernoch P, Schneewind O, Olsen RJ, Musser JM.

Arch Pathol Lab Med. 2011 Nov;135(11):1447-59. doi: 10.5858/2011-0362-SAIR.1. Epub 2011 Aug 9.

PMID:
21882964
29.

Naturally occurring single amino acid replacements in a regulatory protein alter streptococcal gene expression and virulence in mice.

Carroll RK, Shelburne SA 3rd, Olsen RJ, Suber B, Sahasrabhojane P, Kumaraswami M, Beres SB, Shea PR, Flores AR, Musser JM.

J Clin Invest. 2011 May;121(5):1956-68. doi: 10.1172/JCI45169. Epub 2011 Apr 1.

30.

Distinct signatures of diversifying selection revealed by genome analysis of respiratory tract and invasive bacterial populations.

Shea PR, Beres SB, Flores AR, Ewbank AL, Gonzalez-Lugo JH, Martagon-Rosado AJ, Martinez-Gutierrez JC, Rehman HA, Serrano-Gonzalez M, Fittipaldi N, Ayers SD, Webb P, Willey BM, Low DE, Musser JM.

Proc Natl Acad Sci U S A. 2011 Mar 22;108(12):5039-44. doi: 10.1073/pnas.1016282108. Epub 2011 Mar 7.

31.

Virulence of serotype M3 Group A Streptococcus strains in wax worms (Galleria mellonella larvae).

Olsen RJ, Watkins ME, Cantu CC, Beres SB, Musser JM.

Virulence. 2011 Mar-Apr;2(2):111-9. Epub 2011 Mar 1.

32.

Molecular complexity of successive bacterial epidemics deconvoluted by comparative pathogenomics.

Beres SB, Carroll RK, Shea PR, Sitkiewicz I, Martinez-Gutierrez JC, Low DE, McGeer A, Willey BM, Green K, Tyrrell GJ, Goldman TD, Feldgarden M, Birren BW, Fofanov Y, Boos J, Wheaton WD, Honisch C, Musser JM.

Proc Natl Acad Sci U S A. 2010 Mar 2;107(9):4371-6. doi: 10.1073/pnas.0911295107. Epub 2010 Feb 8.

33.

Decreased necrotizing fasciitis capacity caused by a single nucleotide mutation that alters a multiple gene virulence axis.

Olsen RJ, Sitkiewicz I, Ayeras AA, Gonulal VE, Cantu C, Beres SB, Green NM, Lei B, Humbird T, Greaver J, Chang E, Ragasa WP, Montgomery CA, Cartwright J Jr, McGeer A, Low DE, Whitney AR, Cagle PT, Blasdel TL, DeLeo FR, Musser JM.

Proc Natl Acad Sci U S A. 2010 Jan 12;107(2):888-93. doi: 10.1073/pnas.0911811107. Epub 2010 Jan 4.

34.

Contribution of AmyA, an extracellular alpha-glucan degrading enzyme, to group A streptococcal host-pathogen interaction.

Shelburne Iii SA, Keith DB, Davenport MT, Beres SB, Carroll RK, Musser JM.

Mol Microbiol. 2009 Oct;74(1):159-174. doi: 10.1111/j.1365-2958.2009.06858.x. Epub 2009 Sep 3.

35.

Genome sequence of a Lancefield group C Streptococcus zooepidemicus strain causing epidemic nephritis: new information about an old disease.

Beres SB, Sesso R, Pinto SW, Hoe NP, Porcella SF, Deleo FR, Musser JM.

PLoS One. 2008 Aug 21;3(8):e3026. doi: 10.1371/journal.pone.0003026.

36.
37.

Molecular genetic anatomy of inter- and intraserotype variation in the human bacterial pathogen group A Streptococcus.

Beres SB, Richter EW, Nagiec MJ, Sumby P, Porcella SF, DeLeo FR, Musser JM.

Proc Natl Acad Sci U S A. 2006 May 2;103(18):7059-64. Epub 2006 Apr 24.

38.

Genome sequence of a serotype M28 strain of group a streptococcus: potential new insights into puerperal sepsis and bacterial disease specificity.

Green NM, Zhang S, Porcella SF, Nagiec MJ, Barbian KD, Beres SB, LeFebvre RB, Musser JM.

J Infect Dis. 2005 Sep 1;192(5):760-70. Epub 2005 Jul 29.

PMID:
16088825
39.

Genetic diversity among type emm28 group A Streptococcus strains causing invasive infections and pharyngitis.

Green NM, Beres SB, Graviss EA, Allison JE, McGeer AJ, Vuopio-Varkila J, LeFebvre RB, Musser JM.

J Clin Microbiol. 2005 Aug;43(8):4083-91.

40.

Analysis of a novel prophage-encoded group A Streptococcus extracellular phospholipase A(2).

Nagiec MJ, Lei B, Parker SK, Vasil ML, Matsumoto M, Ireland RM, Beres SB, Hoe NP, Musser JM.

J Biol Chem. 2004 Oct 29;279(44):45909-18. Epub 2004 Aug 10.

41.

Genome-wide molecular dissection of serotype M3 group A Streptococcus strains causing two epidemics of invasive infections.

Beres SB, Sylva GL, Sturdevant DE, Granville CN, Liu M, Ricklefs SM, Whitney AR, Parkins LD, Hoe NP, Adams GJ, Low DE, DeLeo FR, McGeer A, Musser JM.

Proc Natl Acad Sci U S A. 2004 Aug 10;101(32):11833-8. Epub 2004 Jul 28.

42.

Progress toward characterization of the group A Streptococcus metagenome: complete genome sequence of a macrolide-resistant serotype M6 strain.

Banks DJ, Porcella SF, Barbian KD, Beres SB, Philips LE, Voyich JM, DeLeo FR, Martin JM, Somerville GA, Musser JM.

J Infect Dis. 2004 Aug 15;190(4):727-38. Epub 2004 Jul 20.

PMID:
15272401
43.

Intrahost sequence variation in the streptococcal inhibitor of complement gene in patients with human pharyngitis.

Matsumoto M, Hoe NP, Liu M, Beres SB, Sylva GL, Brandt CM, Haase G, Musser JM.

J Infect Dis. 2003 Feb 15;187(4):604-12. Epub 2003 Jan 28.

PMID:
12599077
44.

The fundamental contribution of phages to GAS evolution, genome diversification and strain emergence.

Banks DJ, Beres SB, Musser JM.

Trends Microbiol. 2002 Nov;10(11):515-21. Review.

PMID:
12419616
45.

Genome sequence of a serotype M3 strain of group A Streptococcus: phage-encoded toxins, the high-virulence phenotype, and clone emergence.

Beres SB, Sylva GL, Barbian KD, Lei B, Hoff JS, Mammarella ND, Liu MY, Smoot JC, Porcella SF, Parkins LD, Campbell DS, Smith TM, McCormick JK, Leung DY, Schlievert PM, Musser JM.

Proc Natl Acad Sci U S A. 2002 Jul 23;99(15):10078-83. Epub 2002 Jul 16.

46.

Genome sequence and comparative microarray analysis of serotype M18 group A Streptococcus strains associated with acute rheumatic fever outbreaks.

Smoot JC, Barbian KD, Van Gompel JJ, Smoot LM, Chaussee MS, Sylva GL, Sturdevant DE, Ricklefs SM, Porcella SF, Parkins LD, Beres SB, Campbell DS, Smith TM, Zhang Q, Kapur V, Daly JA, Veasy LG, Musser JM.

Proc Natl Acad Sci U S A. 2002 Apr 2;99(7):4668-73. Epub 2002 Mar 26.

47.

In vitro serial passage of Staphylococcus aureus: changes in physiology, virulence factor production, and agr nucleotide sequence.

Somerville GA, Beres SB, Fitzgerald JR, DeLeo FR, Cole RL, Hoff JS, Musser JM.

J Bacteriol. 2002 Mar;184(5):1430-7.

48.

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