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Items: 37

1.

Constructing rigorous and broad biosurveillance networks for detecting emerging zoonotic outbreaks.

Brown M, Moore L, McMahon B, Powell D, LaBute M, Hyman JM, Rivas A, Jankowski M, Berendzen J, Loeppky J, Manore C, Fair J.

PLoS One. 2015 May 6;10(5):e0124037. doi: 10.1371/journal.pone.0124037. eCollection 2015.

2.

Association between cesarean delivery rate and body mass index.

Berendzen JA, Howard BC.

Tenn Med. 2013 Jan;106(1):35-7, 42.

PMID:
23477241
3.

Rapid phylogenetic and functional classification of short genomic fragments with signature peptides.

Berendzen J, Bruno WJ, Cohn JD, Hengartner NW, Kuske CR, McMahon BH, Wolinsky MA, Xie G.

BMC Res Notes. 2012 Aug 28;5:460. doi: 10.1186/1756-0500-5-460.

4.

Recurrent perineal hernia repair: a novel approach.

Berendzen J, Copas P Jr.

Hernia. 2013 Feb;17(1):141-4. doi: 10.1007/s10029-011-0821-1. Epub 2011 May 17.

PMID:
21584817
5.

Fire in labor and delivery: simulation case scenario.

Berendzen JA, van Nes JB, Howard BC, Zite NB.

Simul Healthc. 2011 Feb;6(1):55-61. doi: 10.1097/SIH.0b013e318201351b. No abstract available.

PMID:
21330851
6.

A unified model of protein dynamics.

Frauenfelder H, Chen G, Berendzen J, Fenimore PW, Jansson H, McMahon BH, Stroe IR, Swenson J, Young RD.

Proc Natl Acad Sci U S A. 2009 Mar 31;106(13):5129-34. doi: 10.1073/pnas.0900336106. Epub 2009 Feb 27.

7.

Bayesian correlated MAD phasing.

Terwilliger TC, Berendzen J.

Acta Crystallogr D Biol Crystallogr. 1997 Sep 1;53(Pt 5):571-9.

PMID:
15299888
8.

Automatic solution of heavy-atom substructures.

Weeks CM, Adams PD, Berendzen J, Brunger AT, Dodson EJ, Grosse-Kunstleve RW, Schneider TR, Sheldrick GM, Terwilliger TC, Turkenburg MG, Usón I.

Methods Enzymol. 2003;374:37-83. No abstract available.

PMID:
14696368
9.

Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase.

Yang JK, Yoon HJ, Ahn HJ, Lee BI, Pedelacq JD, Liong EC, Berendzen J, Laivenieks M, Vieille C, Zeikus GJ, Vocadlo DJ, Withers SG, Suh SW.

J Mol Biol. 2004 Jan 2;335(1):155-65.

PMID:
14659747
10.

The TB structural genomics consortium: a resource for Mycobacterium tuberculosis biology.

Terwilliger TC, Park MS, Waldo GS, Berendzen J, Hung LW, Kim CY, Smith CV, Sacchettini JC, Bellinzoni M, Bossi R, De Rossi E, Mattevi A, Milano A, Riccardi G, Rizzi M, Roberts MM, Coker AR, Fossati G, Mascagni P, Coates AR, Wood SP, Goulding CW, Apostol MI, Anderson DH, Gill HS, Eisenberg DS, Taneja B, Mande S, Pohl E, Lamzin V, Tucker P, Wilmanns M, Colovos C, Meyer-Klaucke W, Munro AW, McLean KJ, Marshall KR, Leys D, Yang JK, Yoon HJ, Lee BI, Lee MG, Kwak JE, Han BW, Lee JY, Baek SH, Suh SW, Komen MM, Arcus VL, Baker EN, Lott JS, Jacobs W Jr, Alber T, Rupp B.

Tuberculosis (Edinb). 2003;83(4):223-49. Review.

PMID:
12906835
11.

The TB structural genomics consortium: providing a structural foundation for drug discovery.

Goulding CW, Apostol M, Anderson DH, Gill HS, Smith CV, Kuo MR, Yang JK, Waldo GS, Suh SW, Chauhan R, Kale A, Bachhawat N, Mande SC, Johnston JM, Lott JS, Baker EN, Arcus VL, Leys D, McLean KJ, Munro AW, Berendzen J, Sharma V, Park MS, Eisenberg D, Sacchettini J, Alber T, Rupp B, Jacobs W Jr, Terwilliger TC.

Curr Drug Targets Infect Disord. 2002 Jun;2(2):121-41. Review.

PMID:
12462144
12.

Engineering soluble proteins for structural genomics.

Pédelacq JD, Piltch E, Liong EC, Berendzen J, Kim CY, Rho BS, Park MS, Terwilliger TC, Waldo GS.

Nat Biotechnol. 2002 Sep;20(9):927-32. Epub 2002 Aug 19.

PMID:
12205510
13.

Crystal structure and functional analysis of the SurE protein identify a novel phosphatase family.

Lee JY, Kwak JE, Moon J, Eom SH, Liong EC, Pedelacq JD, Berendzen J, Suh SW.

Nat Struct Biol. 2001 Sep;8(9):789-94.

PMID:
11524683
14.

Structural alterations for proton translocation in the M state of wild-type bacteriorhodopsin.

Sass HJ, Büldt G, Gessenich R, Hehn D, Neff D, Schlesinger R, Berendzen J, Ormos P.

Nature. 2000 Aug 10;406(6796):649-53.

PMID:
10949308
15.

Exploring structure space. A protein structure initiative.

Terwilliger TC, Berendzen J.

Genetica. 1999;106(1-2):141-7.

PMID:
10710720
16.

Structure of a ligand-binding intermediate in wild-type carbonmonoxy myoglobin.

Chu K, Vojtchovský J, McMahon BH, Sweet RM, Berendzen J, Schlichting I.

Nature. 2000 Feb 24;403(6772):921-3.

PMID:
10706294
17.

The catalytic pathway of cytochrome p450cam at atomic resolution.

Schlichting I, Berendzen J, Chu K, Stock AM, Maves SA, Benson DE, Sweet RM, Ringe D, Petsko GA, Sligar SG.

Science. 2000 Mar 3;287(5458):1615-22.

18.

The role of cavities in protein dynamics: crystal structure of a photolytic intermediate of a mutant myoglobin.

Brunori M, Vallone B, Cutruzzola F, Travaglini-Allocatelli C, Berendzen J, Chu K, Sweet RM, Schlichting I.

Proc Natl Acad Sci U S A. 2000 Feb 29;97(5):2058-63.

19.

Evaluation of macromolecular electron-density map quality using the correlation of local r.m.s. density.

Terwilliger TC, Berendzen J.

Acta Crystallogr D Biol Crystallogr. 1999 Nov;55(Pt 11):1872-7.

20.

Crystal structures of myoglobin-ligand complexes at near-atomic resolution.

Vojtechovský J, Chu K, Berendzen J, Sweet RM, Schlichting I.

Biophys J. 1999 Oct;77(4):2153-74.

21.

Rapid protein-folding assay using green fluorescent protein.

Waldo GS, Standish BM, Berendzen J, Terwilliger TC.

Nat Biotechnol. 1999 Jul;17(7):691-5.

PMID:
10404163
22.
23.

Automated MAD and MIR structure solution.

Terwilliger TC, Berendzen J.

Acta Crystallogr D Biol Crystallogr. 1999 Apr;55(Pt 4):849-61.

24.

Class-directed structure determination: foundation for a protein structure initiative.

Terwilliger TC, Waldo G, Peat TS, Newman JM, Chu K, Berendzen J.

Protein Sci. 1998 Sep;7(9):1851-6. Review.

25.

Structure of translation initiation factor 5A from Pyrobaculum aerophilum at 1.75 A resolution.

Peat TS, Newman J, Waldo GS, Berendzen J, Terwilliger TC.

Structure. 1998 Sep 15;6(9):1207-14.

26.

Out of the blue: the photocycle of the photoactive yellow protein.

Schlichting I, Berendzen J.

Structure. 1997 Jun 15;5(6):735-9. Review.

27.

Bayesian difference refinement.

Terwilliger TC, Berendzen J.

Acta Crystallogr D Biol Crystallogr. 1996 Sep 1;52(Pt 5):1004-11.

PMID:
15299610
28.

Correlated phasing of multiple isomorphous replacement data.

Terwilliger TC, Berendzen J.

Acta Crystallogr D Biol Crystallogr. 1996 Jul 1;52(Pt 4):749-57.

PMID:
15299639
29.

Bayesian weighting for macromolecular crystallographic refinement.

Terwilliger TC, Berendzen J.

Acta Crystallogr D Biol Crystallogr. 1996 Jul 1;52(Pt 4):743-8.

PMID:
15299638
30.

Difference refinement: obtaining differences between two related structures.

Terwilliger TC, Berendzen J.

Acta Crystallogr D Biol Crystallogr. 1995 Sep 1;51(Pt 5):609-18.

PMID:
15299790
31.

Crystal structure of photolysed carbonmonoxy-myoglobin.

Schlichting I, Berendzen J, Phillips GN Jr, Sweet RM.

Nature. 1994 Oct 27;371(6500):808-12.

PMID:
7935843
32.

Ligand binding to heme proteins: connection between dynamics and function.

Steinbach PJ, Ansari A, Berendzen J, Braunstein D, Chu K, Cowen BR, Ehrenstein D, Frauenfelder H, Johnson JB, Lamb DC, et al.

Biochemistry. 1991 Apr 23;30(16):3988-4001.

PMID:
2018767
33.

Temperature-derivative spectroscopy: a tool for protein dynamics.

Berendzen J, Braunstein D.

Proc Natl Acad Sci U S A. 1990 Jan;87(1):1-5.

34.

Ligand binding to synthetic mutant myoglobin (His-E7----Gly): role of the distal histidine.

Braunstein D, Ansari A, Berendzen J, Cowen BR, Egeberg KD, Frauenfelder H, Hong MK, Ormos P, Sauke TB, Scholl R, et al.

Proc Natl Acad Sci U S A. 1988 Nov;85(22):8497-501.

35.

Rebinding and relaxation in the myoglobin pocket.

Ansari A, Berendzen J, Braunstein D, Cowen BR, Frauenfelder H, Hong MK, Iben IE, Johnson JB, Ormos P, Sauke TB, et al.

Biophys Chem. 1987 May 9;26(2-3):337-55.

PMID:
3607234
36.

Protein states and proteinquakes.

Ansari A, Berendzen J, Bowne SF, Frauenfelder H, Iben IE, Sauke TB, Shyamsunder E, Young RD.

Proc Natl Acad Sci U S A. 1985 Aug;82(15):5000-4.

37.

Comparison of the magnetic properties of deoxy- and photodissociated myoglobin.

Roder H, Berendzen J, Bowne SF, Frauenfelder H, Sauke TB, Shyamsunder E, Weissman MB.

Proc Natl Acad Sci U S A. 1984 Apr;81(8):2359-63.

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