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Items: 47

1.

Clinical epigenetics: seizing opportunities for translation.

Berdasco M, Esteller M.

Nat Rev Genet. 2019 Feb;20(2):109-127. doi: 10.1038/s41576-018-0074-2. Review.

PMID:
30479381
2.

Genetic variation analysis in a follow-up study of gastric cancer precursor lesions confirms the association of MUC2 variants with the evolution of the lesions and identifies a significant association with NFKB1 and CD14.

Companioni O, Bonet C, García N, Ramírez-Lázaro MJ, Lario S, Mendoza J, Adrados MM, Poves E, Espinosa L, Pozo-Kreilinger JJ, Ortega L, Bujanda L, Cosme A, Ferrández A, Muñoz G, Cuatrecasas M, Elizalde I, Andreu V, Paules MJ, Madrigal B, Barrio J, Berdasco M, Calvet X, Sanz-Anquela JM, Gisbert JP, González CA, Sala N; Study Group.

Int J Cancer. 2018 Dec 1;143(11):2777-2786. doi: 10.1002/ijc.31839. Epub 2018 Oct 4.

PMID:
30171605
3.

Isolation and Partial Characterization of Lactic Acid Bacteria from the Gut Microbiota of Marine Fishes for Potential Application as Probiotics in Aquaculture.

Alonso S, Carmen Castro M, Berdasco M, de la Banda IG, Moreno-Ventas X, de Rojas AH.

Probiotics Antimicrob Proteins. 2018 Jun 29. doi: 10.1007/s12602-018-9439-2. [Epub ahead of print]

PMID:
29959637
4.

In vitro and in vivo activity of a new small-molecule inhibitor of HDAC6 in mantle cell lymphoma.

Pérez-Salvia M, Aldaba E, Vara Y, Fabre M, Ferrer C, Masdeu C, Zubia A, Sebastian ES, Otaegui D, Llinàs-Arias P, Rosselló-Tortella M, Berdasco M, Moutinho C, Setien F, Villanueva A, González-Barca E, Muncunill J, Navarro JT, Piris MA, Cossio FP, Esteller M.

Haematologica. 2018 Nov;103(11):e537-e540. doi: 10.3324/haematol.2018.189241. Epub 2018 Jun 7. No abstract available.

5.

Interplay between long non-coding RNAs and epigenetic machinery: emerging targets in cancer?

Hanly DJ, Esteller M, Berdasco M.

Philos Trans R Soc Lond B Biol Sci. 2018 Jun 5;373(1748). pii: 20170074. doi: 10.1098/rstb.2017.0074. Review.

6.

Early-onset and classical forms of type 2 diabetes show impaired expression of genes involved in muscle branched-chain amino acids metabolism.

Hernández-Alvarez MI, Díaz-Ramos A, Berdasco M, Cobb J, Planet E, Cooper D, Pazderska A, Wanic K, O'Hanlon D, Gomez A, de la Ballina LR, Esteller M, Palacin M, O'Gorman DJ, Nolan JJ, Zorzano A.

Sci Rep. 2017 Oct 23;7(1):13850. doi: 10.1038/s41598-017-14120-6.

7.

DNA Methylomes Reveal Biological Networks Involved in Human Eye Development, Functions and Associated Disorders.

Berdasco M, Gómez A, Rubio MJ, Català-Mora J, Zanón-Moreno V, Lopez M, Hernández C, Yoshida S, Nakama T, Ishikawa K, Ishibashi T, Boubekeur AM, Louhibi L, Pujana MA, Sayols S, Setien F, Corella D, de Torres C, Parareda A, Mora J, Zhao L, Zhang K, Lleonart ME, Alonso J, Simó R, Caminal JM, Esteller M.

Sci Rep. 2017 Sep 18;7(1):11762. doi: 10.1038/s41598-017-12084-1.

8.

A method based on near-infrared spectroscopy for the in-situ determination of the ammonia concentration in ammonia/water mixtures in an absorber test bench.

Barba MI, Berdasco M, Salavera D, Larrechi MS, Coronas A.

Talanta. 2017 Dec 1;175:528-534. doi: 10.1016/j.talanta.2017.07.083. Epub 2017 Jul 28.

PMID:
28842028
9.

Epigenetic mechanisms during ageing and neurogenesis as novel therapeutic avenues in human brain disorders.

Delgado-Morales R, Agís-Balboa RC, Esteller M, Berdasco M.

Clin Epigenetics. 2017 Jun 29;9:67. doi: 10.1186/s13148-017-0365-z. eCollection 2017. Review.

10.

Transcriptomic profiling of urine extracellular vesicles reveals alterations of CDH3 in prostate cancer.

Royo F, Zuñiga-Garcia P, Torrano V, Loizaga A, Sanchez-Mosquera P, Ugalde-Olano A, González E, Cortazar AR, Palomo L, Fernández-Ruiz S, Lacasa-Viscasillas I, Berdasco M, Sutherland JD, Barrio R, Zabala-Letona A, Martín-Martín N, Arruabarrena-Aristorena A, Valcarcel-Jimenez L, Caro-Maldonado A, Gonzalez-Tampan J, Cachi-Fuentes G, Esteller M, Aransay AM, Unda M, Falcón-Pérez JM, Carracedo A.

Oncotarget. 2016 Feb 9;7(6):6835-46. doi: 10.18632/oncotarget.6899.

11.

Incomplete type of intestinal metaplasia has the highest risk to progress to gastric cancer: results of the Spanish follow-up multicenter study.

González CA, Sanz-Anquela JM, Companioni O, Bonet C, Berdasco M, López C, Mendoza J, Martín-Arranz MD, Rey E, Poves E, Espinosa L, Barrio J, Torres MÁ, Cuatrecasas M, Elizalde I, Bujanda L, Garmendia M, Ferrández Á, Muñoz G, Andreu V, Paules MJ, Lario S, Ramírez MJ; Study group, Gisbert JP.

J Gastroenterol Hepatol. 2016 May;31(5):953-8. doi: 10.1111/jgh.13249.

PMID:
26630310
12.

Temozolomide Resistance in Glioblastoma Cell Lines: Implication of MGMT, MMR, P-Glycoprotein and CD133 Expression.

Perazzoli G, Prados J, Ortiz R, Caba O, Cabeza L, Berdasco M, Gónzalez B, Melguizo C.

PLoS One. 2015 Oct 8;10(10):e0140131. doi: 10.1371/journal.pone.0140131. eCollection 2015.

13.

Differential involvement of RASSF2 hypermethylation in breast cancer subtypes and their prognosis.

Perez-Janices N, Blanco-Luquin I, Torrea N, Liechtenstein T, Escors D, Cordoba A, Vicente-Garcia F, Jauregui I, De La Cruz S, Illarramendi JJ, Coca V, Berdasco M, Kochan G, Ibañez B, Lera JM, Guerrero-Setas D.

Oncotarget. 2015 Sep 15;6(27):23944-58.

14.

KAT6B Is a Tumor Suppressor Histone H3 Lysine 23 Acetyltransferase Undergoing Genomic Loss in Small Cell Lung Cancer.

Simó-Riudalbas L, Pérez-Salvia M, Setien F, Villanueva A, Moutinho C, Martínez-Cardús A, Moran S, Berdasco M, Gomez A, Vidal E, Soler M, Heyn H, Vaquero A, de la Torre C, Barceló-Batllori S, Vidal A, Roz L, Pastorino U, Szakszon K, Borck G, Moura CS, Carneiro F, Zondervan I, Savola S, Iwakawa R, Kohno T, Yokota J, Esteller M.

Cancer Res. 2015 Sep 15;75(18):3936-45. doi: 10.1158/0008-5472.CAN-14-3702. Epub 2015 Jul 24.

15.

Effect of genetic ancestry on leukocyte global DNA methylation in cancer patients.

Cappetta M, Berdasco M, Hochmann J, Bonilla C, Sans M, Hidalgo PC, Artagaveytia N, Kittles R, Martínez M, Esteller M, Bertoni B.

BMC Cancer. 2015 May 27;15:434. doi: 10.1186/s12885-015-1461-0.

16.

An integrated epigenomic analysis for type 2 diabetes susceptibility loci in monozygotic twins.

Yuan W, Xia Y, Bell CG, Yet I, Ferreira T, Ward KJ, Gao F, Loomis AK, Hyde CL, Wu H, Lu H, Liu Y, Small KS, Viñuela A, Morris AP, Berdasco M, Esteller M, Brosnan MJ, Deloukas P, McCarthy MI, John SL, Bell JT, Wang J, Spector TD.

Nat Commun. 2014 Dec 12;5:5719. doi: 10.1038/ncomms6719.

17.

A comprehensive DNA methylation profile of epithelial-to-mesenchymal transition.

Carmona FJ, Davalos V, Vidal E, Gomez A, Heyn H, Hashimoto Y, Vizoso M, Martinez-Cardus A, Sayols S, Ferreira HJ, Sánchez-Mut JV, Morán S, Margelí M, Castella E, Berdasco M, Stefansson OA, Eyfjord JE, Gonzalez-Suarez E, Dopazo J, Orozco M, Gut IG, Esteller M.

Cancer Res. 2014 Oct 1;74(19):5608-19. doi: 10.1158/0008-5472.CAN-13-3659. Epub 2014 Aug 8.

18.

Regulation of DNA methylation patterns by CK2-mediated phosphorylation of Dnmt3a.

Deplus R, Blanchon L, Rajavelu A, Boukaba A, Defrance M, Luciani J, Rothé F, Dedeurwaerder S, Denis H, Brinkman AB, Simmer F, Müller F, Bertin B, Berdasco M, Putmans P, Calonne E, Litchfield DW, de Launoit Y, Jurkowski TP, Stunnenberg HG, Bock C, Sotiriou C, Fraga MF, Esteller M, Jeltsch A, Fuks F.

Cell Rep. 2014 Aug 7;8(3):743-53. doi: 10.1016/j.celrep.2014.06.048. Epub 2014 Jul 24.

19.

S-adenosylmethionine levels regulate the schwann cell DNA methylome.

Varela-Rey M, Iruarrizaga-Lejarreta M, Lozano JJ, Aransay AM, Fernandez AF, Lavin JL, Mósen-Ansorena D, Berdasco M, Turmaine M, Luka Z, Wagner C, Lu SC, Esteller M, Mirsky R, Jessen KR, Fraga MF, Martínez-Chantar ML, Mato JM, Woodhoo A.

Neuron. 2014 Mar 5;81(5):1024-1039. doi: 10.1016/j.neuron.2014.01.037.

20.

RASSF2 hypermethylation is present and related to shorter survival in squamous cervical cancer.

Guerrero-Setas D, Pérez-Janices N, Blanco-Fernandez L, Ojer A, Cambra K, Berdasco M, Esteller M, Maria-Ruiz S, Torrea N, Guarch R.

Mod Pathol. 2013 Aug;26(8):1111-22. doi: 10.1038/modpathol.2013.32. Epub 2013 Mar 29.

21.

Genetic syndromes caused by mutations in epigenetic genes.

Berdasco M, Esteller M.

Hum Genet. 2013 Apr;132(4):359-83. doi: 10.1007/s00439-013-1271-x. Epub 2013 Jan 31. Review.

PMID:
23370504
22.

NuRD-dependent DNA methylation prevents ES cells from accessing a trophectoderm fate.

Latos PA, Helliwell C, Mosaku O, Dudzinska DA, Stubbs B, Berdasco M, Esteller M, Hendrich B.

Biol Open. 2012 Apr 15;1(4):341-52. doi: 10.1242/bio.2012513. Epub 2012 Feb 7.

23.

DNA methylation plasticity of human adipose-derived stem cells in lineage commitment.

Berdasco M, Melguizo C, Prados J, Gómez A, Alaminos M, Pujana MA, Lopez M, Setien F, Ortiz R, Zafra I, Aranega A, Esteller M.

Am J Pathol. 2012 Dec;181(6):2079-93. doi: 10.1016/j.ajpath.2012.08.016. Epub 2012 Sep 29.

24.

DNA hypermethylation in somatic cells correlates with higher reprogramming efficiency.

Barrero MJ, Berdasco M, Paramonov I, Bilic J, Vitaloni M, Esteller M, Izpisua Belmonte JC.

Stem Cells. 2012 Aug;30(8):1696-702. doi: 10.1002/stem.1138.

25.

Basic procedures for epigenetic analysis in plant cell and tissue culture.

Rodríguez JL, Pascual J, Viejo M, Valledor L, Meijón M, Hasbún R, Yrei NY, Santamaría ME, Pérez M, Fernández Fraga M, Berdasco M, Rodríguez Fernández R, Cañal MJ.

Methods Mol Biol. 2012;877:325-41. doi: 10.1007/978-1-61779-818-4_25.

PMID:
22610639
26.

Epigenetics, the role of DNA methylation in tree development.

Viejo M, Santamaría ME, Rodríguez JL, Valledor L, Meijón M, Pérez M, Pascual J, Hasbún R, Fernández Fraga M, Berdasco M, Toorop PE, Cañal MJ, Rodríguez Fernández R.

Methods Mol Biol. 2012;877:277-301. doi: 10.1007/978-1-61779-818-4_22.

PMID:
22610636
27.

Polychlorinated biphenyls affect histone modification pattern in early development of rats: a role for androgen receptor-dependent modulation?

Casati L, Sendra R, Colciago A, Negri-Cesi P, Berdasco M, Esteller M, Celotti F.

Epigenomics. 2012 Feb;4(1):101-12. doi: 10.2217/epi.11.110.

PMID:
22332662
28.

Hot topics in epigenetic mechanisms of aging: 2011.

Berdasco M, Esteller M.

Aging Cell. 2012 Apr;11(2):181-6. doi: 10.1111/j.1474-9726.2012.00806.x.

29.

DNA methylation in stem cell renewal and multipotency.

Berdasco M, Esteller M.

Stem Cell Res Ther. 2011 Oct 31;2(5):42. doi: 10.1186/scrt83. Review.

30.

A DNA methylation fingerprint of 1628 human samples.

Fernandez AF, Assenov Y, Martin-Subero JI, Balint B, Siebert R, Taniguchi H, Yamamoto H, Hidalgo M, Tan AC, Galm O, Ferrer I, Sanchez-Cespedes M, Villanueva A, Carmona J, Sanchez-Mut JV, Berdasco M, Moreno V, Capella G, Monk D, Ballestar E, Ropero S, Martinez R, Sanchez-Carbayo M, Prosper F, Agirre X, Fraga MF, Graña O, Perez-Jurado L, Mora J, Puig S, Prat J, Badimon L, Puca AA, Meltzer SJ, Lengauer T, Bridgewater J, Bock C, Esteller M.

Genome Res. 2012 Feb;22(2):407-19. doi: 10.1101/gr.119867.110. Epub 2011 May 25.

31.

NID2 and HOXA9 promoter hypermethylation as biomarkers for prevention and early detection in oral cavity squamous cell carcinoma tissues and saliva.

Guerrero-Preston R, Soudry E, Acero J, Orera M, Moreno-López L, Macía-Colón G, Jaffe A, Berdasco M, Ili-Gangas C, Brebi-Mieville P, Fu Y, Engstrom C, Irizarry RA, Esteller M, Westra W, Koch W, Califano J, Sidransky D.

Cancer Prev Res (Phila). 2011 Jul;4(7):1061-72. doi: 10.1158/1940-6207.CAPR-11-0006. Epub 2011 May 10.

32.

Aberrant epigenetic landscape in cancer: how cellular identity goes awry.

Berdasco M, Esteller M.

Dev Cell. 2010 Nov 16;19(5):698-711. doi: 10.1016/j.devcel.2010.10.005. Review.

33.

Changes in the pattern of DNA methylation associate with twin discordance in systemic lupus erythematosus.

Javierre BM, Fernandez AF, Richter J, Al-Shahrour F, Martin-Subero JI, Rodriguez-Ubreva J, Berdasco M, Fraga MF, O'Hanlon TP, Rider LG, Jacinto FV, Lopez-Longo FJ, Dopazo J, Forn M, Peinado MA, Carreño L, Sawalha AH, Harley JB, Siebert R, Esteller M, Miller FW, Ballestar E.

Genome Res. 2010 Feb;20(2):170-9. doi: 10.1101/gr.100289.109. Epub 2009 Dec 22.

34.

Epigenetic inactivation of the Sotos overgrowth syndrome gene histone methyltransferase NSD1 in human neuroblastoma and glioma.

Berdasco M, Ropero S, Setien F, Fraga MF, Lapunzina P, Losson R, Alaminos M, Cheung NK, Rahman N, Esteller M.

Proc Natl Acad Sci U S A. 2009 Dec 22;106(51):21830-5. doi: 10.1073/pnas.0906831106. Epub 2009 Dec 14.

35.

Polyamines affect histamine synthesis during early stages of IL-3-induced bone marrow cell differentiation.

García-Faroldi G, Correa-Fiz F, Abrighach H, Berdasco M, Fraga MF, Esteller M, Urdiales JL, Sánchez-Jiménez F, Fajardo I.

J Cell Biochem. 2009 Sep 1;108(1):261-71. doi: 10.1002/jcb.22246.

PMID:
19562674
36.

The RNA-binding protein HuR regulates DNA methylation through stabilization of DNMT3b mRNA.

López de Silanes I, Gorospe M, Taniguchi H, Abdelmohsen K, Srikantan S, Alaminos M, Berdasco M, Urdinguio RG, Fraga MF, Jacinto FV, Esteller M.

Nucleic Acids Res. 2009 May;37(8):2658-71. doi: 10.1093/nar/gkp123. Epub 2009 Mar 6.

37.

Global DNA methylation: a common early event in oral cancer cases with exposure to environmental carcinogens or viral agents.

Guerrero-Preston R, Báez A, Blanco A, Berdasco M, Fraga M, Esteller M.

P R Health Sci J. 2009 Mar;28(1):24-9.

PMID:
19266736
38.

A role for RNAi in the selective correction of DNA methylation defects.

Teixeira FK, Heredia F, Sarazin A, Roudier F, Boccara M, Ciaudo C, Cruaud C, Poulain J, Berdasco M, Fraga MF, Voinnet O, Wincker P, Esteller M, Colot V.

Science. 2009 Mar 20;323(5921):1600-4. doi: 10.1126/science.1165313. Epub 2009 Jan 29.

39.

Identification of (1H)-pyrroles as histone deacetylase inhibitors with antitumoral activity.

Zubia A, Ropero S, Otaegui D, Ballestar E, Fraga MF, Boix-Chornet M, Berdasco M, Martinez A, Coll-Mulet L, Gil J, Cossío FP, Esteller M.

Oncogene. 2009 Mar 19;28(11):1477-84. doi: 10.1038/onc.2008.501. Epub 2009 Jan 26.

PMID:
19169274
40.

Quantification of global DNA methylation by capillary electrophoresis and mass spectrometry.

Berdasco M, Fraga MF, Esteller M.

Methods Mol Biol. 2009;507:23-34. doi: 10.1007/978-1-59745-522-0_2.

PMID:
18987803
41.

Promoter DNA hypermethylation and gene repression in undifferentiated Arabidopsis cells.

Berdasco M, Alcázar R, García-Ortiz MV, Ballestar E, Fernández AF, Roldán-Arjona T, Tiburcio AF, Altabella T, Buisine N, Quesneville H, Baudry A, Lepiniec L, Alaminos M, Rodríguez R, Lloyd A, Colot V, Bender J, Canal MJ, Esteller M, Fraga MF.

PLoS One. 2008 Oct 1;3(10):e3306. doi: 10.1371/journal.pone.0003306.

42.

Epigenetic inactivation of the Groucho homologue gene TLE1 in hematologic malignancies.

Fraga MF, Berdasco M, Ballestar E, Ropero S, Lopez-Nieva P, Lopez-Serra L, Martín-Subero JI, Calasanz MJ, Lopez de Silanes I, Setien F, Casado S, Fernandez AF, Siebert R, Stifani S, Esteller M.

Cancer Res. 2008 Jun 1;68(11):4116-22. doi: 10.1158/0008-5472.CAN-08-0085.

43.

Global DNA hypomethylation in liver cancer cases and controls: a phase I preclinical biomarker development study.

Guerrero-Preston R, Santella RM, Blanco A, Desai M, Berdasco M, Fraga M.

Epigenetics. 2007 Oct-Dec;2(4):223-6. Epub 2007 Oct 29.

PMID:
18032927
44.

Variations in DNA methylation patterns during the cell cycle of HeLa cells.

Brown SE, Fraga MF, Weaver IC, Berdasco M, Szyf M.

Epigenetics. 2007 Jan-Mar;2(1):54-65. Epub 2007 Jan 15.

PMID:
17965591
45.

Changes in polyamine concentration associated with aging in Pinus radiata and Prunus persica.

Fraga MF, Berdasco M, Diego LB, Rodríguez R, Cañal MJ.

Tree Physiol. 2004 Nov;24(11):1221-6.

PMID:
15339731
46.

A Pinus radiata AAA-ATPase, the expression of which increases with tree ageing.

Diego LB, Berdasco M, Fraga MF, Cañal MJ, Rodríguez R, Castresana C.

J Exp Bot. 2004 Jul;55(402):1597-9. Epub 2004 Jun 18.

PMID:
15208342
47.

High-performance capillary electrophoretic method for the quantification of 5-methyl 2'-deoxycytidine in genomic DNA: application to plant, animal and human cancer tissues.

Fraga MF, Uriol E, Borja Diego L, Berdasco M, Esteller M, Cañal MJ, Rodríguez R.

Electrophoresis. 2002 Jun;23(11):1677-81.

PMID:
12179987

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