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Parasite diversity and ecology in a model species, the guppy (Poecilia reticulata) in Trinidad.

Mohammed RS, King SD, Bentzen P, Marcogliese D, van Oosterhout C, Lighten J.

R Soc Open Sci. 2020 Jan 22;7(1):191112. doi: 10.1098/rsos.191112. eCollection 2020 Jan.


Modular chromosome rearrangements reveal parallel and nonparallel adaptation in a marine fish.

Kess T, Bentzen P, Lehnert SJ, Sylvester EVA, Lien S, Kent MP, Sinclair-Waters M, Morris C, Wringe B, Fairweather R, Bradbury IR.

Ecol Evol. 2020 Jan 11;10(2):638-653. doi: 10.1002/ece3.5828. eCollection 2020 Jan.


Evolutionary impacts differ between two exploited populations of northern bottlenose whale (Hyperoodon ampullatus).

Feyrer LJ, Bentzen P, Whitehead H, Paterson IG, Einfeldt A.

Ecol Evol. 2019 Nov 19;9(23):13567-13584. doi: 10.1002/ece3.5813. eCollection 2019 Dec.


Eco-Evolutionary Feedbacks Predict the Time Course of Rapid Life-History Evolution.

Reznick DN, Bassar RD, Handelsman CA, Ghalambor CK, Arendt J, Coulson T, Potter T, Ruell EW, Torres-Dowdall J, Bentzen P, Travis J.

Am Nat. 2019 Nov;194(5):671-692. doi: 10.1086/705380. Epub 2019 Sep 9.


Genomic signatures and correlates of widespread population declines in salmon.

Lehnert SJ, Kess T, Bentzen P, Kent MP, Lien S, Gilbey J, Clément M, Jeffery NW, Waples RS, Bradbury IR.

Nat Commun. 2019 Jul 5;10(1):2996. doi: 10.1038/s41467-019-10972-w.


A migration-associated supergene reveals loss of biocomplexity in Atlantic cod.

Kess T, Bentzen P, Lehnert SJ, Sylvester EVA, Lien S, Kent MP, Sinclair-Waters M, Morris CJ, Regular P, Fairweather R, Bradbury IR.

Sci Adv. 2019 Jun 26;5(6):eaav2461. doi: 10.1126/sciadv.aav2461. eCollection 2019 Jun.


Evidence for contemporary and historical gene flow between guppy populations in different watersheds, with a test for associations with adaptive traits.

Blondel L, Baillie L, Quinton J, Alemu JB, Paterson I, Hendry AP, Bentzen P.

Ecol Evol. 2019 Mar 29;9(8):4504-4517. doi: 10.1002/ece3.5033. eCollection 2019 Apr.


Estimating the relative fitness of escaped farmed salmon offspring in the wild and modelling the consequences of invasion for wild populations.

Sylvester EVA, Wringe BF, Duffy SJ, Hamilton LC, Fleming IA, Castellani M, Bentzen P, Bradbury IR.

Evol Appl. 2019 Jan 28;12(4):705-717. doi: 10.1111/eva.12746. eCollection 2019 Apr.


Chromosome polymorphisms track trans-Atlantic divergence and secondary contact in Atlantic salmon.

Lehnert SJ, Bentzen P, Kess T, Lien S, Horne JB, Clément M, Bradbury IR.

Mol Ecol. 2019 Apr;28(8):2074-2087. doi: 10.1111/mec.15065. Epub 2019 Apr 29.


Spatio-temporal dynamics of density-dependent dispersal during a population colonisation.

De Bona S, Bruneaux M, Lee AEG, Reznick DN, Bentzen P, López-Sepulcre A.

Ecol Lett. 2019 Apr;22(4):634-644. doi: 10.1111/ele.13205. Epub 2019 Feb 4.


Range-wide genomic data synthesis reveals transatlantic vicariance and secondary contact in Atlantic cod.

Fairweather R, Bradbury IR, Helyar SJ, de Bruyn M, Therkildsen NO, Bentzen P, Hemmer-Hansen J, Carvalho GR.

Ecol Evol. 2018 Nov 16;8(23):12140-12152. doi: 10.1002/ece3.4672. eCollection 2018 Dec.


RADProc: A computationally efficient de novo locus assembler for population studies using RADseq data.

Nadukkalam Ravindran P, Bentzen P, Bradbury IR, Beiko RG.

Mol Ecol Resour. 2019 Jan;19(1):272-282. doi: 10.1111/1755-0998.12954. Epub 2018 Dec 21.


Environmental extremes drive population structure at the northern range limit of Atlantic salmon in North America.

Sylvester EVA, Beiko RG, Bentzen P, Paterson I, Horne JB, Watson B, Lehnert S, Duffy S, Clément M, Robertson MJ, Bradbury IR.

Mol Ecol. 2018 Oct;27(20):4026-4040. doi: 10.1111/mec.14849. Epub 2018 Sep 17.


PMERGE: Computational filtering of paralogous sequences from RAD-seq data.

Nadukkalam Ravindran P, Bentzen P, Bradbury IR, Beiko RG.

Ecol Evol. 2018 Jun 11;8(14):7002-7013. doi: 10.1002/ece3.4219. eCollection 2018 Jul.


Genotyping-by-sequencing of genome-wide microsatellite loci reveals fine-scale harvest composition in a coastal Atlantic salmon fishery.

Bradbury IR, Wringe BF, Watson B, Paterson I, Horne J, Beiko R, Lehnert SJ, Clément M, Anderson EC, Jeffery NW, Duffy S, Sylvester E, Robertson M, Bentzen P.

Evol Appl. 2018 Mar 11;11(6):918-930. doi: 10.1111/eva.12606. eCollection 2018 Jul.


Population connectivity and larval dispersal of the exploited mangrove crab Ucides cordatus along the Brazilian coast.

Britto FB, Schmidt AJ, Carvalho AMF, Vasconcelos CCMP, Farias AM, Bentzen P, Diniz FM.

PeerJ. 2018 Apr 30;6:e4702. doi: 10.7717/peerj.4702. eCollection 2018.


Isolation and characterization of microsatellite markers in the spiny lobster, Panulirus echinatus Smith, 1869 (Decapoda: Palinuridae) by Illumina MiSeq sequencing.

Santos MF, Souza IGB, Gomes SO, Silva GR, Bentzen P, Diniz FM.

J Genet. 2018 Apr 11;97(1):e25-e30. No abstract available.


A climate-associated multispecies cryptic cline in the northwest Atlantic.

Stanley RRE, DiBacco C, Lowen B, Beiko RG, Jeffery NW, Van Wyngaarden M, Bentzen P, Brickman D, Benestan L, Bernatchez L, Johnson C, Snelgrove PVR, Wang Z, Wringe BF, Bradbury IR.

Sci Adv. 2018 Mar 28;4(3):eaaq0929. doi: 10.1126/sciadv.aaq0929. eCollection 2018 Mar.


Applications of random forest feature selection for fine-scale genetic population assignment.

Sylvester EVA, Bentzen P, Bradbury IR, Clément M, Pearce J, Horne J, Beiko RG.

Evol Appl. 2017 Sep 14;11(2):153-165. doi: 10.1111/eva.12524. eCollection 2018 Feb.


Range-wide parallel climate-associated genomic clines in Atlantic salmon.

Jeffery NW, Stanley RRE, Wringe BF, Guijarro-Sabaniel J, Bourret V, Bernatchez L, Bentzen P, Beiko RG, Gilbey J, Clément M, Bradbury IR.

R Soc Open Sci. 2017 Nov 15;4(11):171394. doi: 10.1098/rsos.171394. eCollection 2017 Nov.


Ancient chromosomal rearrangement associated with local adaptation of a postglacially colonized population of Atlantic Cod in the northwest Atlantic.

Sinclair-Waters M, Bradbury IR, Morris CJ, Lien S, Kent MP, Bentzen P.

Mol Ecol. 2018 Jan;27(2):339-351. doi: 10.1111/mec.14442. Epub 2017 Dec 27.


Evolutionary genetics of immunological supertypes reveals two faces of the Red Queen.

Lighten J, Papadopulos AST, Mohammed RS, Ward BJ, G Paterson I, Baillie L, Bradbury IR, Hendry AP, Bentzen P, van Oosterhout C.

Nat Commun. 2017 Nov 3;8(1):1294. doi: 10.1038/s41467-017-01183-2.


Barcoding Atlantic Canada's mesopelagic and upper bathypelagic marine fishes.

Kenchington EL, Baillie SM, Kenchington TJ, Bentzen P.

PLoS One. 2017 Sep 20;12(9):e0185173. doi: 10.1371/journal.pone.0185173. eCollection 2017.


Trans-oceanic genomic divergence of Atlantic cod ecotypes is associated with large inversions.

Berg PR, Star B, Pampoulie C, Bradbury IR, Bentzen P, Hutchings JA, Jentoft S, Jakobsen KS.

Heredity (Edinb). 2017 Dec;119(6):418-428. doi: 10.1038/hdy.2017.54. Epub 2017 Sep 20.


Small-scale intraspecific patterns of adaptive immunogenetic polymorphisms and neutral variation in Lake Superior lake trout.

Baillie SM, Hemstock RR, Muir AM, Krueger CC, Bentzen P.

Immunogenetics. 2018 Jan;70(1):53-66. doi: 10.1007/s00251-017-0996-4. Epub 2017 May 25.


Adaptive phenotypic response to climate enabled by epigenetics in a K-strategy species, the fish Leucoraja ocellata (Rajidae).

Lighten J, Incarnato D, Ward BJ, van Oosterhout C, Bradbury I, Hanson M, Bentzen P.

R Soc Open Sci. 2016 Oct 26;3(10):160299. eCollection 2016 Oct.


Genetic and phenotypic variation along an ecological gradient in lake trout Salvelinus namaycush.

Baillie SM, Muir AM, Hansen MJ, Krueger CC, Bentzen P.

BMC Evol Biol. 2016 Oct 19;16(1):219.


megasat: automated inference of microsatellite genotypes from sequence data.

Zhan L, Paterson IG, Fraser BA, Watson B, Bradbury IR, Nadukkalam Ravindran P, Reznick D, Beiko RG, Bentzen P.

Mol Ecol Resour. 2017 Mar;17(2):247-256. doi: 10.1111/1755-0998.12561. Epub 2016 Jul 19.


Don't bet against the natal homing abilities of marine fishes.

Bentzen P, Bradbury IR.

Mol Ecol. 2016 Jun;25(12):2691-2. doi: 10.1111/mec.13591.


Annotated mitochondrial genome assemblies for two sand lances (genus: Ammodytes) from the northwest Atlantic.

Horne JB, Mcbride MC, Lighten J, Bradbury IR, Bentzen P.

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Nov;27(6):4607-4608. Epub 2015 Dec 7.


Do stressful conditions make adaptation difficult? Guppies in the oil-polluted environments of southern Trinidad.

Rolshausen G, Phillip DA, Beckles DM, Akbari A, Ghoshal S, Hamilton PB, Tyler CR, Scarlett AG, Ramnarine I, Bentzen P, Hendry AP.

Evol Appl. 2015 Oct;8(9):854-70. doi: 10.1111/eva.12289. Epub 2015 Sep 4.


Selection analysis on the rapid evolution of a secondary sexual trait.

Gordon SP, Reznick D, Arendt JD, Roughton A, Ontiveros Hernandez MN, Bentzen P, López-Sepulcre A.

Proc Biol Sci. 2015 Aug 22;282(1813):20151244. doi: 10.1098/rspb.2015.1244.


Complete mitochondrial genomes for Icelus spatula, Aspidophoroides olrikii and Leptoclinus maculatus: pan-Arctic marine fishes from Canadian waters.

Swanburg T, Horne JB, Baillie S, King SD, McBride MC, Mackley MP, Paterson IG, Bradbury IR, Bentzen P.

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Jul;27(4):2982-3. doi: 10.3109/19401736.2015.1060472. Epub 2015 Jun 30.


Long distance linkage disequilibrium and limited hybridization suggest cryptic speciation in atlantic cod.

Bradbury IR, Bowman S, Borza T, Snelgrove PV, Hutchings JA, Berg PR, Rodríguez-Ezpeleta N, Lighten J, Ruzzante DE, Taggart C, Bentzen P.

PLoS One. 2014 Sep 26;9(9):e106380. doi: 10.1371/journal.pone.0106380. eCollection 2014.


Critical review of NGS analyses for de novo genotyping multigene families.

Lighten J, van Oosterhout C, Bentzen P.

Mol Ecol. 2014 Aug;23(16):3957-72. doi: 10.1111/mec.12843. Epub 2014 Jul 21. Review.


Human disturbance causes the formation of a hybrid swarm between two naturally sympatric fish species.

Hasselman DJ, Argo EE, McBride MC, Bentzen P, Schultz TF, Perez-Umphrey AA, Palkovacs EP.

Mol Ecol. 2014 Mar;23(5):1137-52. doi: 10.1111/mec.12674. Epub 2014 Feb 20.


Ultra-deep Illumina sequencing accurately identifies MHC class IIb alleles and provides evidence for copy number variation in the guppy (Poecilia reticulata).

Lighten J, van Oosterhout C, Paterson IG, McMullan M, Bentzen P.

Mol Ecol Resour. 2014 Jul;14(4):753-67. doi: 10.1111/1755-0998.12225. Epub 2014 Feb 5.


Gyrodactylus laevisoides n. sp. (Monogenea: Gyrodactylidae) infecting northern redbelly dace Phoxinus eos Cope (Cyprinidae) from Nova Scotia, Canada.

King SD, Cone DK, Mackley MP, Bentzen P.

Syst Parasitol. 2013 Nov;86(3):285-91. doi: 10.1007/s11230-013-9450-7. Epub 2013 Oct 27.


Description of Gyrodactylus mediotorus n. sp. (Monogenea: Gyrodactylidae) infecting spottail shiner (Notropis hudsonius) from the St. Lawrence River, Canada.

King SD, Marcogliese DJ, Forest JJ, McLaughlin JD, Bentzen P.

J Parasitol. 2013 Dec;99(6):1062-6. doi: 10.1645/13-216.1. Epub 2013 Jul 24.


Genomic islands of divergence and their consequences for the resolution of spatial structure in an exploited marine fish.

Bradbury IR, Hubert S, Higgins B, Bowman S, Borza T, Paterson IG, Snelgrove PV, Morris CJ, Gregory RS, Hardie D, Hutchings JA, Ruzzante DE, Taggart CT, Bentzen P.

Evol Appl. 2013 Apr;6(3):450-61. doi: 10.1111/eva.12026. Epub 2013 Jan 21.


Beyond lifetime reproductive success: the posthumous reproductive dynamics of male Trinidadian guppies.

López-Sepulcre A, Gordon SP, Paterson IG, Bentzen P, Reznick DN.

Proc Biol Sci. 2013 Jun 5;280(1763):20131116. doi: 10.1098/rspb.2013.1116. Print 2013 Jul 22.


Genetic diversity and differentiation in a wide ranging anadromous fish, American shad (Alosa sapidissima), is correlated with latitude.

Hasselman DJ, Ricard D, Bentzen P.

Mol Ecol. 2013 Mar;22(6):1558-73. doi: 10.1111/mec.12197. Epub 2013 Feb 4.


Barcoding Atlantic Canada's commonly encountered marine fishes.

McCusker MR, Denti D, Van Guelpen L, Kenchington E, Bentzen P.

Mol Ecol Resour. 2013 Mar;13(2):177-88. doi: 10.1111/1755-0998.12043. Epub 2012 Dec 17.


Adding parasites to the guppy-predation story: insights from field surveys.

Gotanda KM, Delaire LC, Raeymaekers JA, Pérez-Jvostov F, Dargent F, Bentzen P, Scott ME, Fussmann GF, Hendry AP.

Oecologia. 2013 May;172(1):155-66. doi: 10.1007/s00442-012-2485-7. Epub 2012 Oct 9.


DNA barcoding of Canada's skates.

Coulson MW, Denti D, Van Guelpen L, Miri C, Kenchington E, Bentzen P.

Mol Ecol Resour. 2011 Nov;11(6):968-78. doi: 10.1111/j.1755-0998.2011.03034.x. Epub 2011 Jun 9.


Evaluating SNP ascertainment bias and its impact on population assignment in Atlantic cod, Gadus morhua.

Bradbury IR, Hubert S, Higgins B, Bowman S, Paterson IG, Snelgrove PV, Morris CJ, Gregory RS, Hardie DC, Borza T, Bentzen P.

Mol Ecol Resour. 2011 Mar;11 Suppl 1:218-25. doi: 10.1111/j.1755-0998.2010.02949.x.


Eco-evolutionary effects on population recovery following catastrophic disturbance.

Weese DJ, Schwartz AK, Bentzen P, Hendry AP, Kinnison MT.

Evol Appl. 2011 Mar;4(2):354-66. doi: 10.1111/j.1752-4571.2010.00169.x.


Isolation and differentiation of Rivulus hartii across Trinidad and neighboring islands.

Walter RP, Blum MJ, Snider SB, Paterson IG, Bentzen P, Lamphere BA, Gilliam JF.

Mol Ecol. 2011 Feb;20(3):601-18. doi: 10.1111/j.1365-294X.2010.04968.x. Epub 2010 Dec 29.


Both geography and ecology contribute to mating isolation in guppies.

Schwartz AK, Weese DJ, Bentzen P, Kinnison MT, Hendry AP.

PLoS One. 2010 Dec 15;5(12):e15659. doi: 10.1371/journal.pone.0015659.


Positive relationships between genetic diversity and abundance in fishes.

McCusker MR, Bentzen P.

Mol Ecol. 2010 Nov;19(22):4852-62. doi: 10.1111/j.1365-294X.2010.04822.x. Epub 2010 Sep 17.


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