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Items: 1 to 50 of 489

1.

Pneumococcal lineages associated with serotype replacement and antibiotic resistance in childhood invasive pneumococcal disease in the post-PCV13 era: an international whole-genome sequencing study.

Lo SW, Gladstone RA, van Tonder AJ, Lees JA, du Plessis M, Benisty R, Givon-Lavi N, Hawkins PA, Cornick JE, Kwambana-Adams B, Law PY, Ho PL, Antonio M, Everett DB, Dagan R, von Gottberg A, Klugman KP, McGee L, Breiman RF, Bentley SD; Global Pneumococcal Sequencing Consortium.

Lancet Infect Dis. 2019 Jun 7. pii: S1473-3099(19)30297-X. doi: 10.1016/S1473-3099(19)30297-X. [Epub ahead of print]

2.

Putative novel cps loci in a large global collection of pneumococci.

van Tonder AJ, Gladstone RA, Lo SW, Nahm MH, du Plessis M, Cornick J, Kwambana-Adams B, Madhi SA, Hawkins PA, Benisty R, Dagan R, Everett D, Antonio M, Klugman KP, von Gottberg A, Breiman RF, McGee L, Bentley SD; The Global Pneumococcal Sequencing Consortium.

Microb Genom. 2019 Jun 11. doi: 10.1099/mgen.0.000274. [Epub ahead of print]

3.

A pilot study of improvised CPAP (iCPAP) via face mask for the treatment of adult respiratory distress in low-resource settings.

Milliner BH, Bentley S, DuCanto J.

Int J Emerg Med. 2019 Mar 5;12(1):7. doi: 10.1186/s12245-019-0224-0.

4.

Factors Associated with Pediatric Emergency Room Utilization in an Urban Community Hospital in Santiago, Dominican Republic.

Lockwood A, Dandekar A, Arias M, Ovalles M, Bentley S.

Ann Glob Health. 2019 Jun 6;85(1). pii: 77. doi: 10.5334/aogh.2327.

PMID:
31172729
5.

A Simulated Mass Casualty Incident Triage Exercise: SimWars.

Bentley S, Iavicoli L, Boehm L, Agriantonis G, Dilos B, LaMonica J, Smith C, Wong L, Lopez T, Galer A, Kessle S.

MedEdPORTAL. 2019 May 10;15:10823. doi: 10.15766/mep_2374-8265.10823.

6.

Atlas of group A streptococcal vaccine candidates compiled using large-scale comparative genomics.

Davies MR, McIntyre L, Mutreja A, Lacey JA, Lees JA, Towers RJ, Duchêne S, Smeesters PR, Frost HR, Price DJ, Holden MTG, David S, Giffard PM, Worthing KA, Seale AC, Berkley JA, Harris SR, Rivera-Hernandez T, Berking O, Cork AJ, Torres RSLA, Lithgow T, Strugnell RA, Bergmann R, Nitsche-Schmitz P, Chhatwal GS, Bentley SD, Fraser JD, Moreland NJ, Carapetis JR, Steer AC, Parkhill J, Saul A, Williamson DA, Currie BJ, Tong SYC, Dougan G, Walker MJ.

Nat Genet. 2019 Jun;51(6):1035-1043. doi: 10.1038/s41588-019-0417-8. Epub 2019 May 27.

PMID:
31133745
7.

Early signals of vaccine driven perturbation seen in pneumococcal carriage population genomic data.

Chaguza C, Heinsbroek E, Gladstone RA, Tafatatha T, Alaerts M, Peno C, Cornick JE, Musicha P, Bar-Zeev N, Kamng'ona A, Kadioglu A, McGee L, Hanage WP, Breiman RF, Heyderman RS, French N, Everett DB, Bentley SD.

Clin Infect Dis. 2019 May 16. pii: ciz404. doi: 10.1093/cid/ciz404. [Epub ahead of print]

PMID:
31094423
8.

Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis.

Lees JA, Ferwerda B, Kremer PHC, Wheeler NE, Serón MV, Croucher NJ, Gladstone RA, Bootsma HJ, Rots NY, Wijmega-Monsuur AJ, Sanders EAM, Trzciński K, Wyllie AL, Zwinderman AH, van den Berg LH, van Rheenen W, Veldink JH, Harboe ZB, Lundbo LF, de Groot LCPGM, van Schoor NM, van der Velde N, Ängquist LH, Sørensen TIA, Nohr EA, Mentzer AJ, Mills TC, Knight JC, du Plessis M, Nzenze S, Weiser JN, Parkhill J, Madhi S, Benfield T, von Gottberg A, van der Ende A, Brouwer MC, Barrett JC, Bentley SD, van de Beek D.

Nat Commun. 2019 May 15;10(1):2176. doi: 10.1038/s41467-019-09976-3.

9.

Recombination of the phase variable spnIII locus is independent of all known pneumococcal site-specific recombinases.

De Ste Croix M, Chen Y, Vacca I, Manso AS, Johnston C, Polard P, Kwun MJ, Bentley SD, Croucher NJ, Bayliss CD, Haigh RD, Oggioni MR.

J Bacteriol. 2019 May 13. pii: JB.00233-19. doi: 10.1128/JB.00233-19. [Epub ahead of print]

10.

Fast hierarchical Bayesian analysis of population structure.

Tonkin-Hill G, Lees JA, Bentley SD, Frost SDW, Corander J.

Nucleic Acids Res. 2019 May 11. pii: gkz361. doi: 10.1093/nar/gkz361. [Epub ahead of print]

PMID:
31076776
11.

International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact.

Gladstone RA, Lo SW, Lees JA, Croucher NJ, van Tonder AJ, Corander J, Page AJ, Marttinen P, Bentley LJ, Ochoa TJ, Ho PL, du Plessis M, Cornick JE, Kwambana-Adams B, Benisty R, Nzenze SA, Madhi SA, Hawkins PA, Everett DB, Antonio M, Dagan R, Klugman KP, von Gottberg A, McGee L, Breiman RF, Bentley SD; Global Pneumococcal Sequencing Consortium.

EBioMedicine. 2019 May;43:338-346. doi: 10.1016/j.ebiom.2019.04.021. Epub 2019 Apr 16.

12.

Construction at Work: Multiple Identities Scaffold Professional Identity Development in Academia.

Bentley SV, Peters K, Haslam SA, Greenaway KH.

Front Psychol. 2019 Mar 26;10:628. doi: 10.3389/fpsyg.2019.00628. eCollection 2019.

13.

Genomic Analyses of >3,100 Nasopharyngeal Pneumococci Revealed Significant Differences Between Pneumococci Recovered in Four Different Geographical Regions.

van Tonder AJ, Bray JE, Jolley KA, Jansen van Rensburg M, Quirk SJ, Haraldsson G, Maiden MCJ, Bentley SD, Haraldsson Á, Erlendsdóttir H, Kristinsson KG, Brueggemann AB.

Front Microbiol. 2019 Feb 25;10:317. doi: 10.3389/fmicb.2019.00317. eCollection 2019.

14.

Food safety objectives, criteria, ranking and hierarchization.

Liuzzo G, Bentley S, Giacometti F, Piva S, Serraino A.

Ital J Food Saf. 2019 Feb 11;7(4):7395. doi: 10.4081/ijfs.2018.7395. eCollection 2018 Dec 31.

15.

In Reply: "Impact of Targeted Temperature Management on ED Patients with Drug Overdose-Related Cardiac Arrest".

Khan S, Meyers CM, Bentley S, Manini AF.

J Med Toxicol. 2019 Mar 5. doi: 10.1007/s13181-019-00702-5. [Epub ahead of print] No abstract available.

PMID:
30838508
16.

Psychosocial assessment of potential retinal prosthesis trial participants.

Bentley SA, O'Hare F, Murphy GC, Finger RP, Luu CD, Keeffe JE, Abbott CJ, Guymer RH, Ayton LN.

Clin Exp Optom. 2019 Mar 4. doi: 10.1111/cxo.12889. [Epub ahead of print]

PMID:
30834589
17.

Could adoption of the rural pipeline concept redress Australian optometry workforce issues?

Kirkman JM, Bentley SA, Armitage JA, Woods CA.

Clin Exp Optom. 2019 Feb 23. doi: 10.1111/cxo.12873. [Epub ahead of print] Review.

PMID:
30801801
18.

Fast and flexible bacterial genomic epidemiology with PopPUNK.

Lees JA, Harris SR, Tonkin-Hill G, Gladstone RA, Lo SW, Weiser JN, Corander J, Bentley SD, Croucher NJ.

Genome Res. 2019 Feb;29(2):304-316. doi: 10.1101/gr.241455.118. Epub 2019 Jan 24.

19.

Vaccination of Icelandic Children with the 10-Valent Pneumococcal Vaccine Leads to a Significant Herd Effect among Adults in Iceland.

Quirk SJ, Haraldsson G, Hjálmarsdóttir MÁ, van Tonder AJ, Hrafnkelsson B, Bentley SD, Haraldsson Á, Erlendsdóttir H, Brueggemann AB, Kristinsson KG.

J Clin Microbiol. 2019 Mar 28;57(4). pii: e01766-18. doi: 10.1128/JCM.01766-18. Print 2019 Apr.

20.

Simulation-based Remediation in Emergency Medicine Residency Training: A Consensus Study.

Nadir NA, Hart D, Cassara M, Noelker J, Moadel T, Kulkarni M, Sampson CS, Bentley S, Naik NK, Hernandez J, Krzyzaniak SM, Lai S, Podolej G, Strother C.

West J Emerg Med. 2019 Jan;20(1):145-156. doi: 10.5811/westjem.2018.10.39781. Epub 2018 Nov 20.

21.

Social involvement, food safety and food security.

Liuzzo G, Bentley S, Giacometti F, Piva S, Serraino A.

Ital J Food Saf. 2018 Sep 26;7(3):7394. doi: 10.4081/ijfs.2018.7394. eCollection 2018 Sep 26.

22.

pyseer: a comprehensive tool for microbial pangenome-wide association studies.

Lees JA, Galardini M, Bentley SD, Weiser JN, Corander J.

Bioinformatics. 2018 Dec 15;34(24):4310-4312. doi: 10.1093/bioinformatics/bty539.

23.

The Hsp70/J-protein machinery of the African trypanosome, Trypanosoma brucei.

Bentley SJ, Jamabo M, Boshoff A.

Cell Stress Chaperones. 2019 Jan;24(1):125-148. doi: 10.1007/s12192-018-0950-x. Epub 2018 Dec 1.

PMID:
30506377
24.

DORA Editorial.

Parish T, Harris M, Fry N, Mathee K, Trujillo ME, Bentley S, Thomson N.

Microbiology. 2019 Feb;165(2):125-126. doi: 10.1099/mic.0.000751. Epub 2018 Dec 5. No abstract available.

PMID:
30516468
25.

DORA Editorial.

Parish T, Harris M, Fry N, Mathee K, Trujillo ME, Bentley S, Thomson N.

J Gen Virol. 2019 Jan;100(1):1-2. doi: 10.1099/jgv.0.001191. Epub 2018 Dec 5. No abstract available.

PMID:
30516467
26.

DORA Editorial.

Parish T, Harris M, Fry N, Mathee K, Trujillo ME, Bentley S, Thomson N.

J Med Microbiol. 2019 Feb;68(2):117-118. doi: 10.1099/jmm.0.000887. Epub 2018 Dec 5. No abstract available.

PMID:
30516466
27.

DORA Editorial.

Parish T, Harris M, Fry N, Mathee K, Trujillo ME, Bentley S, Thomson N.

Microb Genom. 2018 Dec;4(12). doi: 10.1099/mgen.0.000238. Epub 2018 Dec 5. No abstract available.

28.

DORA Editorial.

Parish T, Harris M, Fry N, Mathee K, Trujillo ME, Bentley S, Thomson N.

Int J Syst Evol Microbiol. 2019 Jan;69(1):1-2. doi: 10.1099/ijsem.0.003172. No abstract available.

PMID:
30516461
29.

Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci.

Azarian T, Mitchell PK, Georgieva M, Thompson CM, Ghouila A, Pollard AJ, von Gottberg A, du Plessis M, Antonio M, Kwambana-Adams BA, Clarke SC, Everett D, Cornick J, Sadowy E, Hryniewicz W, Skoczynska A, Moïsi JC, McGee L, Beall B, Metcalf BJ, Breiman RF, Ho PL, Reid R, O'Brien KL, Gladstone RA, Bentley SD, Hanage WP.

PLoS Pathog. 2018 Nov 26;14(11):e1007438. doi: 10.1371/journal.ppat.1007438. eCollection 2018 Nov.

30.

PANINI: Pangenome Neighbour Identification for Bacterial Populations.

Abudahab K, Prada JM, Yang Z, Bentley SD, Croucher NJ, Corander J, Aanensen DM.

Microb Genom. 2019 Apr;5(4). doi: 10.1099/mgen.0.000220. Epub 2018 Nov 22.

31.

Impact of Targeted Temperature Management on ED Patients with Drug Overdose-Related Cardiac Arrest.

Khan S, Meyers CM, Bentley S, Manini AF.

J Med Toxicol. 2019 Jan;15(1):22-29. doi: 10.1007/s13181-018-0686-0. Epub 2018 Nov 8.

PMID:
30411236
32.

A genomic infection control study for Staphylococcus aureus in two Ghanaian hospitals.

Donkor ES, Jamrozy D, Mills RO, Dankwah T, Amoo PK, Egyir B, Badoe EV, Twasam J, Bentley SD.

Infect Drug Resist. 2018 Oct 11;11:1757-1765. doi: 10.2147/IDR.S167639. eCollection 2018.

33.

RhierBAPS: An R implementation of the population clustering algorithm hierBAPS.

Tonkin-Hill G, Lees JA, Bentley SD, Frost SDW, Corander J.

Wellcome Open Res. 2018 Jul 30;3:93. doi: 10.12688/wellcomeopenres.14694.1. eCollection 2018.

34.

Excision-reintegration at a pneumococcal phase-variable restriction-modification locus drives within- and between-strain epigenetic differentiation and inhibits gene acquisition.

Kwun MJ, Oggioni MR, De Ste Croix M, Bentley SD, Croucher NJ.

Nucleic Acids Res. 2018 Nov 30;46(21):11438-11453. doi: 10.1093/nar/gky906.

35.

Effect of Vaccination on Pneumococci Isolated from the Nasopharynx of Healthy Children and the Middle Ear of Children with Otitis Media in Iceland.

Quirk SJ, Haraldsson G, Erlendsdóttir H, Hjálmarsdóttir MÁ, van Tonder AJ, Hrafnkelsson B, Sigurdsson S, Bentley SD, Haraldsson Á, Brueggemann AB, Kristinsson KG.

J Clin Microbiol. 2018 Nov 27;56(12). pii: e01046-18. doi: 10.1128/JCM.01046-18. Print 2018 Dec.

36.

Pneumococcal Vaccines: Host Interactions, Population Dynamics, and Design Principles.

Croucher NJ, Løchen A, Bentley SD.

Annu Rev Microbiol. 2018 Sep 8;72:521-549. doi: 10.1146/annurev-micro-090817-062338.

PMID:
30200849
37.

Bayesian inference of ancestral dates on bacterial phylogenetic trees.

Didelot X, Croucher NJ, Bentley SD, Harris SR, Wilson DJ.

Nucleic Acids Res. 2018 Dec 14;46(22):e134. doi: 10.1093/nar/gky783.

38.

Corrigendum: SeroBA: rapid high-throughput serotyping of Streptococcus pneumoniae from whole genome sequence data.

Epping L, van Tonder AJ, Gladstone RA, Bentley SD, Page AJ, Keane JA; The Global Pneumococcal Sequencing Consortium.

Microb Genom. 2018 Aug;4(8). doi: 10.1099/mgen.0.000204. No abstract available.

39.

Pneumococcal vaccine impacts on the population genomics of non-typeable Haemophilus influenzae.

Cleary D, Devine V, Morris D, Osman K, Gladstone R, Bentley S, Faust S, Clarke S.

Microb Genom. 2018 Sep;4(9). doi: 10.1099/mgen.0.000209. Epub 2018 Aug 6.

40.

Loss of Genomic Diversity in a Neisseria meningitidis Clone Through a Colonization Bottleneck.

Lamelas A, Hamid AM, Dangy JP, Hauser J, Jud M, Röltgen K, Hodgson A, Junghanss T, Harris SR, Parkhill J, Bentley SD, Pluschke G.

Genome Biol Evol. 2018 Aug 1;10(8):2102-2109. doi: 10.1093/gbe/evy152.

41.

Global Scale Dissemination of ST93: A Divergent Staphylococcus aureus Epidemic Lineage That Has Recently Emerged From Remote Northern Australia.

van Hal SJ, Steinig EJ, Andersson P, Holden MTG, Harris SR, Nimmo GR, Williamson DA, Heffernan H, Ritchie SR, Kearns AM, Ellington MJ, Dickson E, de Lencastre H, Coombs GW, Bentley SD, Parkhill J, Holt DC, Giffard PM, Tong SYC.

Front Microbiol. 2018 Jul 9;9:1453. doi: 10.3389/fmicb.2018.01453. eCollection 2018.

42.

Profile of the Australian College of Optometry low vision clinic.

Chong MF, Cho HH, Jackson AJ, Bentley SA.

Clin Exp Optom. 2018 Nov;101(6):793-798. doi: 10.1111/cxo.12805. Epub 2018 Jul 18.

PMID:
30021246
43.

SeroBA: rapid high-throughput serotyping of Streptococcus pneumoniae from whole genome sequence data.

Epping L, van Tonder AJ, Gladstone RA, The Global Pneumococcal Sequencing Consortium, Bentley SD, Page AJ, Keane JA.

Microb Genom. 2018 Jul;4(7). doi: 10.1099/mgen.0.000186. Epub 2018 Jun 15. Erratum in: Microb Genom. 2018 Aug;4(8):.

44.

SuperDCA for genome-wide epistasis analysis.

Puranen S, Pesonen M, Pensar J, Xu YY, Lees JA, Bentley SD, Croucher NJ, Corander J.

Microb Genom. 2018 Jun;4(6). doi: 10.1099/mgen.0.000184. Epub 2018 May 29.

45.

The Contribution of Genetic Variation of Streptococcus pneumoniae to the Clinical Manifestation of Invasive Pneumococcal Disease.

Cremers AJH, Mobegi FM, van der Gaast-de Jongh C, van Weert M, van Opzeeland FJ, Vehkala M, Knol MJ, Bootsma HJ, Välimäki N, Croucher NJ, Meis JF, Bentley S, van Hijum SAFT, Corander J, Zomer AL, Ferwerda G, de Jonge MI.

Clin Infect Dis. 2019 Jan 1;68(1):61-69. doi: 10.1093/cid/ciy417.

PMID:
29788414
46.

Evaluation of phylogenetic reconstruction methods using bacterial whole genomes: a simulation based study.

Lees JA, Kendall M, Parkhill J, Colijn C, Bentley SD, Harris SR.

Wellcome Open Res. 2018 Mar 23;3:33. doi: 10.12688/wellcomeopenres.14265.2. eCollection 2018.

47.

Global Distribution of Invasive Serotype 35D Streptococcus pneumoniae Isolates following Introduction of 13-Valent Pneumococcal Conjugate Vaccine.

Lo SW, Gladstone RA, van Tonder AJ, Hawkins PA, Kwambana-Adams B, Cornick JE, Madhi SA, Nzenze SA, du Plessis M, Kandasamy R, Carter PE, Eser ÖK, Ho PL, Elmdaghri N, Shakoor S, Clarke SC, Antonio M, Everett DB, von Gottberg A, Klugman KP, McGee L, Breiman RF, Bentley SD.

J Clin Microbiol. 2018 Jun 25;56(7). pii: e00228-18. doi: 10.1128/JCM.00228-18. Print 2018 Jul.

48.

Reading aids for adults with low vision.

Virgili G, Acosta R, Bentley SA, Giacomelli G, Allcock C, Evans JR.

Cochrane Database Syst Rev. 2018 Apr 17;4:CD003303. doi: 10.1002/14651858.CD003303.pub4. Review.

49.

The impact of serotype-specific vaccination on phylodynamic parameters of Streptococcus pneumoniae and the pneumococcal pan-genome.

Azarian T, Grant LR, Arnold BJ, Hammitt LL, Reid R, Santosham M, Weatherholtz R, Goklish N, Thompson CM, Bentley SD, O'Brien KL, Hanage WP, Lipsitch M.

PLoS Pathog. 2018 Apr 4;14(4):e1006966. doi: 10.1371/journal.ppat.1006966. eCollection 2018 Apr.

50.

Effects of Environmental and Management-Associated Factors on Prevalence and Diversity of Streptococcus suis in Clinically Healthy Pig Herds in China and the United Kingdom.

Zou G, Zhou J, Xiao R, Zhang L, Cheng Y, Jin H, Li L, Zhang L, Wu B, Qian P, Li S, Ren L, Wang J, Oshota O, Hernandez-Garcia J, Wileman TM, Bentley S, Weinert L, Maskell DJ, Tucker AWD, Zhou R.

Appl Environ Microbiol. 2018 Apr 2;84(8). pii: e02590-17. doi: 10.1128/AEM.02590-17. Print 2018 Apr 15.

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