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Items: 14

1.

Early nasopharyngeal microbial signature associated with severe influenza in children: a retrospective pilot study.

Langevin S, Pichon M, Smith E, Morrison J, Bent Z, Green R, Barker K, Solberg O, Gillet Y, Javouhey E, Lina B, Katze MG, Josset L.

J Gen Virol. 2017 Oct;98(10):2425-2437. doi: 10.1099/jgv.0.000920. Epub 2017 Sep 8.

PMID:
28884664
2.

Massively parallel digital transcriptional profiling of single cells.

Zheng GX, Terry JM, Belgrader P, Ryvkin P, Bent ZW, Wilson R, Ziraldo SB, Wheeler TD, McDermott GP, Zhu J, Gregory MT, Shuga J, Montesclaros L, Underwood JG, Masquelier DA, Nishimura SY, Schnall-Levin M, Wyatt PW, Hindson CM, Bharadwaj R, Wong A, Ness KD, Beppu LW, Deeg HJ, McFarland C, Loeb KR, Valente WJ, Ericson NG, Stevens EA, Radich JP, Mikkelsen TS, Hindson BJ, Bielas JH.

Nat Commun. 2017 Jan 16;8:14049. doi: 10.1038/ncomms14049.

3.

A Rapid Spin Column-Based Method to Enrich Pathogen Transcripts from Eukaryotic Host Cells Prior to Sequencing.

Bent ZW, Poorey K, LaBauve AE, Hamblin R, Williams KP, Meagher RJ.

PLoS One. 2016 Dec 21;11(12):e0168788. doi: 10.1371/journal.pone.0168788. eCollection 2016.

4.

Experimental single-strain mobilomics reveals events that shape pathogen emergence.

Schoeniger JS, Hudson CM, Bent ZW, Sinha A, Williams KP.

Nucleic Acids Res. 2016 Aug 19;44(14):6830-9. doi: 10.1093/nar/gkw601. Epub 2016 Jul 4.

5.

Haplotyping germline and cancer genomes with high-throughput linked-read sequencing.

Zheng GX, Lau BT, Schnall-Levin M, Jarosz M, Bell JM, Hindson CM, Kyriazopoulou-Panagiotopoulou S, Masquelier DA, Merrill L, Terry JM, Mudivarti PA, Wyatt PW, Bharadwaj R, Makarewicz AJ, Li Y, Belgrader P, Price AD, Lowe AJ, Marks P, Vurens GM, Hardenbol P, Montesclaros L, Luo M, Greenfield L, Wong A, Birch DE, Short SW, Bjornson KP, Patel P, Hopmans ES, Wood C, Kaur S, Lockwood GK, Stafford D, Delaney JP, Wu I, Ordonez HS, Grimes SM, Greer S, Lee JY, Belhocine K, Giorda KM, Heaton WH, McDermott GP, Bent ZW, Meschi F, Kondov NO, Wilson R, Bernate JA, Gauby S, Kindwall A, Bermejo C, Fehr AN, Chan A, Saxonov S, Ness KD, Hindson BJ, Ji HP.

Nat Biotechnol. 2016 Mar;34(3):303-11. doi: 10.1038/nbt.3432. Epub 2016 Feb 1.

6.

Transcriptomic Analysis of Yersinia enterocolitica Biovar 1B Infecting Murine Macrophages Reveals New Mechanisms of Extracellular and Intracellular Survival.

Bent ZW, Poorey K, Brazel DM, LaBauve AE, Sinha A, Curtis DJ, House SE, Tew KE, Hamblin RY, Williams KP, Branda SS, Young GM, Meagher RJ.

Infect Immun. 2015 Jul;83(7):2672-85. doi: 10.1128/IAI.02922-14. Epub 2015 Apr 20.

7.

Resistance determinants and mobile genetic elements of an NDM-1-encoding Klebsiella pneumoniae strain.

Hudson CM, Bent ZW, Meagher RJ, Williams KP.

PLoS One. 2014 Jun 6;9(6):e99209. doi: 10.1371/journal.pone.0099209. eCollection 2014.

8.

The Yersinia enterocolitica Ysa type III secretion system is expressed during infections both in vitro and in vivo.

Bent ZW, Branda SS, Young GM.

Microbiologyopen. 2013 Dec;2(6):962-75. doi: 10.1002/mbo3.136. Epub 2013 Oct 24.

9.

Use of a capture-based pathogen transcript enrichment strategy for RNA-Seq analysis of the Francisella tularensis LVS transcriptome during infection of murine macrophages.

Bent ZW, Brazel DM, Tran-Gyamfi MB, Hamblin RY, VanderNoot VA, Branda SS.

PLoS One. 2013 Oct 14;8(10):e77834. doi: 10.1371/journal.pone.0077834. eCollection 2013.

10.

A microfluidic DNA library preparation platform for next-generation sequencing.

Kim H, Jebrail MJ, Sinha A, Bent ZW, Solberg OD, Williams KP, Langevin SA, Renzi RF, Van De Vreugde JL, Meagher RJ, Schoeniger JS, Lane TW, Branda SS, Bartsch MS, Patel KD.

PLoS One. 2013 Jul 22;8(7):e68988. doi: 10.1371/journal.pone.0068988. Print 2013.

11.

Peregrine: A rapid and unbiased method to produce strand-specific RNA-Seq libraries from small quantities of starting material.

Langevin SA, Bent ZW, Solberg OD, Curtis DJ, Lane PD, Williams KP, Schoeniger JS, Sinha A, Lane TW, Branda SS.

RNA Biol. 2013 Apr;10(4):502-15. doi: 10.4161/rna.24284. Epub 2013 Apr 1.

12.

Enriching pathogen transcripts from infected samples: a capture-based approach to enhanced host-pathogen RNA sequencing.

Bent ZW, Tran-Gyamfi MB, Langevin SA, Brazel DM, Hamblin RY, Branda SS, Patel KD, Lane TW, VanderNoot VA.

Anal Biochem. 2013 Jul 1;438(1):90-6. doi: 10.1016/j.ab.2013.03.008. Epub 2013 Mar 25.

PMID:
23535274
13.

cDNA normalization by hydroxyapatite chromatography to enrich transcriptome diversity in RNA-seq applications.

Vandernoot VA, Langevin SA, Solberg OD, Lane PD, Curtis DJ, Bent ZW, Williams KP, Patel KD, Schoeniger JS, Branda SS, Lane TW.

Biotechniques. 2012 Dec;53(6):373-80. doi: 10.2144/000113937.

14.

Contribution of BlaA and BlaB beta-lactamases to antibiotic susceptibility of Yersinia enterocolitica biovar 1B.

Bent ZW, Young GM.

Antimicrob Agents Chemother. 2010 Sep;54(9):4000-2. doi: 10.1128/AAC.01754-09. Epub 2010 Jun 14.

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