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Items: 26

1.

Correction: Exploring new approaches towards the formability of mixed-ion perovskites by DFT and machine learning.

Park H, Mall R, Alharbi FH, Sanvito S, Tabet N, Bensmail H, El-Mellouhi F.

Phys Chem Chem Phys. 2019 Jan 30;21(5):2821. doi: 10.1039/c9cp90013f.

PMID:
30657154
2.

KinVis: A visualization tool to detect cryptic relatedness in genetic datasets.

Ullah E, Aupetit M, Das A, Patil A, Muftah NA, Rawi R, Saad M, Bensmail H.

Bioinformatics. 2018 Dec 24. doi: 10.1093/bioinformatics/bty1028. [Epub ahead of print]

PMID:
30590437
3.

Exploring new approaches towards the formability of mixed-ion perovskites by DFT and machine learning.

Park H, Mall R, Alharbi FH, Sanvito S, Tabet N, Bensmail H, El-Mellouhi F.

Phys Chem Chem Phys. 2019 Jan 21;21(3):1078-1088. doi: 10.1039/c8cp06528d. Epub 2018 Dec 19. Erratum in: Phys Chem Chem Phys. 2019 Jan 30;21(5):2821.

PMID:
30566133
4.

Comparison and assessment of family- and population-based genotype imputation methods in large pedigrees.

Ullah E, Mall R, Abbas MM, Kunji K, Nato AQ Jr, Bensmail H, Wijsman EM, Saad M.

Genome Res. 2019 Jan;29(1):125-134. doi: 10.1101/gr.236315.118. Epub 2018 Dec 4.

5.

DeepCrystal: A Deep Learning Framework for Sequence-based Protein Crystallization Prediction.

Elbasir A, Moovarkumudalvan B, Kunji K, Kolatkar PR, Mall R, Bensmail H.

Bioinformatics. 2018 Nov 21. doi: 10.1093/bioinformatics/bty953. [Epub ahead of print]

PMID:
30462171
6.

Correction to: Harnessing Qatar Biobank to understand type 2 diabetes and obesity in adult Qataris from the First Qatar Biobank Project.

Ullah E, Mall R, Rawi R, Moustaid-Moussa N, Butt AA, Bensmail H.

J Transl Med. 2018 Oct 15;16(1):283. doi: 10.1186/s12967-018-1648-7.

7.

Prediction of protein group function by iterative classification on functional relevance network.

Khan IK, Jain A, Rawi R, Bensmail H, Kihara D.

Bioinformatics. 2019 Apr 15;35(8):1388-1394. doi: 10.1093/bioinformatics/bty787.

PMID:
30192921
8.

Harnessing Qatar Biobank to understand type 2 diabetes and obesity in adult Qataris from the First Qatar Biobank Project.

Ullah E, Mall R, Rawi R, Moustaid-Moussa N, Butt AA, Bensmail H.

J Transl Med. 2018 Apr 12;16(1):99. doi: 10.1186/s12967-018-1472-0. Erratum in: J Transl Med. 2018 Oct 15;16(1):283.

9.

DeepSol: a deep learning framework for sequence-based protein solubility prediction.

Khurana S, Rawi R, Kunji K, Chuang GY, Bensmail H, Mall R.

Bioinformatics. 2018 Aug 1;34(15):2605-2613. doi: 10.1093/bioinformatics/bty166.

PMID:
29554211
10.

RGBM: regularized gradient boosting machines for identification of the transcriptional regulators of discrete glioma subtypes.

Mall R, Cerulo L, Garofano L, Frattini V, Kunji K, Bensmail H, Sabedot TS, Noushmehr H, Lasorella A, Iavarone A, Ceccarelli M.

Nucleic Acids Res. 2018 Apr 20;46(7):e39. doi: 10.1093/nar/gky015.

11.

Detection of statistically significant network changes in complex biological networks.

Mall R, Cerulo L, Bensmail H, Iavarone A, Ceccarelli M.

BMC Syst Biol. 2017 Mar 4;11(1):32. doi: 10.1186/s12918-017-0412-6.

12.

COUSCOus: improved protein contact prediction using an empirical Bayes covariance estimator.

Rawi R, Mall R, Kunji K, El Anbari M, Aupetit M, Ullah E, Bensmail H.

BMC Bioinformatics. 2016 Dec 15;17(1):533.

13.

Correction: Coevolution Analysis of HIV-1 Envelope Glycoprotein Complex.

Rawi R, Kunji K, Haoudi A, Bensmail H.

PLoS One. 2015 Dec 23;10(12):e0145974. doi: 10.1371/journal.pone.0145974. eCollection 2015. No abstract available.

14.

Coevolution Analysis of HIV-1 Envelope Glycoprotein Complex.

Rawi R, Kunji K, Haoudi A, Bensmail H.

PLoS One. 2015 Nov 18;10(11):e0143245. doi: 10.1371/journal.pone.0143245. eCollection 2015. Erratum in: PLoS One. 2015;10(12):e0145974.

15.

Systems biology analysis reveals NFAT5 as a novel biomarker and master regulator of inflammatory breast cancer.

Remo A, Simeone I, Pancione M, Parcesepe P, Finetti P, Cerulo L, Bensmail H, Birnbaum D, Van Laere SJ, Colantuoni V, Bonetti F, Bertucci F, Manfrin E, Ceccarelli M.

J Transl Med. 2015 May 1;13:138. doi: 10.1186/s12967-015-0492-2.

16.

Model selection emphasises the importance of non-chromosomal information in genetic studies.

Rawi R, El Anbari M, Bensmail H.

PLoS One. 2015 Jan 27;10(1):e0117014. doi: 10.1371/journal.pone.0117014. eCollection 2015.

17.

Feature selection and multi-kernel learning for sparse representation on a manifold.

Wang JJ, Bensmail H, Gao X.

Neural Netw. 2014 Mar;51:9-16. doi: 10.1016/j.neunet.2013.11.009. Epub 2013 Nov 28.

PMID:
24333479
18.

Multiple graph regularized protein domain ranking.

Wang JJ, Bensmail H, Gao X.

BMC Bioinformatics. 2012 Nov 19;13:307. doi: 10.1186/1471-2105-13-307.

19.

Efficient feature selection and multiclass classification with integrated instance and model based learning.

Liu Z, Bensmail H, Tan M.

Evol Bioinform Online. 2012;8:197-205. doi: 10.4137/EBO.S9407. Epub 2012 Apr 30.

20.

Bioinformatics and data mining in proteomics.

Haoudi A, Bensmail H.

Expert Rev Proteomics. 2006 Jun;3(3):333-43. Review.

PMID:
16771705
21.

Gene expression data classification with Kernel principal component analysis.

Liu Z, Chen D, Bensmail H.

J Biomed Biotechnol. 2005 Jun 30;2005(2):155-9.

22.

Functional clustering algorithm for high-dimensional proteomics data.

Bensmail H, Aruna B, Semmes OJ, Haoudi A.

J Biomed Biotechnol. 2005 Jun 30;2005(2):80-6.

23.

Data mining in genomics and proteomics.

Bensmail H, Haoudi A.

J Biomed Biotechnol. 2005 Jun 30;2005(2):63-4. No abstract available.

24.

Clustering gene expression data with kernel principal components.

Liu Z, Chen D, Bensmail H, Xu Y.

J Bioinform Comput Biol. 2005 Apr;3(2):303-16.

PMID:
15852507
25.

A novel approach for clustering proteomics data using Bayesian fast Fourier transform.

Bensmail H, Golek J, Moody MM, Semmes JO, Haoudi A.

Bioinformatics. 2005 May 15;21(10):2210-24. Epub 2005 Mar 15.

PMID:
15769836
26.

Postgenomics: Proteomics and Bioinformatics in Cancer Research.

Bensmail H, Haoudi A.

J Biomed Biotechnol. 2003;2003(4):217-230.

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