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Items: 33

1.

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.

de Vries RP, Riley R, Wiebenga A, Aguilar-Osorio G, Amillis S, Uchima CA, Anderluh G, Asadollahi M, Askin M, Barry K, Battaglia E, Bayram Ö, Benocci T, Braus-Stromeyer SA, Caldana C, Cánovas D, Cerqueira GC, Chen F, Chen W, Choi C, Clum A, Dos Santos RA, Damásio AR, Diallinas G, Emri T, Fekete E, Flipphi M, Freyberg S, Gallo A, Gournas C, Habgood R, Hainaut M, Harispe ML, Henrissat B, Hildén KS, Hope R, Hossain A, Karabika E, Karaffa L, Karányi Z, Kraševec N, Kuo A, Kusch H, LaButti K, Lagendijk EL, Lapidus A, Levasseur A, Lindquist E, Lipzen A, Logrieco AF, MacCabe A, Mäkelä MR, Malavazi I, Melin P, Meyer V, Mielnichuk N, Miskei M, Molnár ÁP, Mulé G, Ngan CY, Orejas M, Orosz E, Ouedraogo JP, Overkamp KM, Park HS, Perrone G, Piumi F, Punt PJ, Ram AF, Ramón A, Rauscher S, Record E, Riaño-Pachón DM, Robert V, Röhrig J, Ruller R, Salamov A, Salih NS, Samson RA, Sándor E, Sanguinetti M, Schütze T, Sepčić K, Shelest E, Sherlock G, Sophianopoulou V, Squina FM, Sun H, Susca A, Todd RB, Tsang A, Unkles SE, van de Wiele N, van Rossen-Uffink D, Oliveira JV, Vesth TC, Visser J, Yu JH, Zhou M, Andersen MR, Archer DB, Baker SE, Benoit I, Brakhage AA, Braus GH, Fischer R, Frisvad JC, Goldman GH, Houbraken J, Oakley B, Pócsi I, Scazzocchio C, Seiboth B, vanKuyk PA, Wortman J, Dyer PS, Grigoriev IV.

Genome Biol. 2017 Feb 14;18(1):28. doi: 10.1186/s13059-017-1151-0.

2.

Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication.

Corrochano LM, Kuo A, Marcet-Houben M, Polaino S, Salamov A, Villalobos-Escobedo JM, Grimwood J, Álvarez MI, Avalos J, Bauer D, Benito EP, Benoit I, Burger G, Camino LP, Cánovas D, Cerdá-Olmedo E, Cheng JF, Domínguez A, Eliáš M, Eslava AP, Glaser F, Gutiérrez G, Heitman J, Henrissat B, Iturriaga EA, Lang BF, Lavín JL, Lee SC, Li W, Lindquist E, López-García S, Luque EM, Marcos AT, Martin J, McCluskey K, Medina HR, Miralles-Durán A, Miyazaki A, Muñoz-Torres E, Oguiza JA, Ohm RA, Olmedo M, Orejas M, Ortiz-Castellanos L, Pisabarro AG, Rodríguez-Romero J, Ruiz-Herrera J, Ruiz-Vázquez R, Sanz C, Schackwitz W, Shahriari M, Shelest E, Silva-Franco F, Soanes D, Syed K, Tagua VG, Talbot NJ, Thon MR, Tice H, de Vries RP, Wiebenga A, Yadav JS, Braun EL, Baker SE, Garre V, Schmutz J, Horwitz BA, Torres-Martínez S, Idnurm A, Herrera-Estrella A, Gabaldón T, Grigoriev IV.

Curr Biol. 2016 Jun 20;26(12):1577-1584. doi: 10.1016/j.cub.2016.04.038. Epub 2016 May 26.

3.

Enhancing saccharification of wheat straw by mixing enzymes from genetically-modified Trichoderma reesei and Aspergillus niger.

Jiang Y, Duarte AV, van den Brink J, Wiebenga A, Zou G, Wang C, de Vries RP, Zhou Z, Benoit I.

Biotechnol Lett. 2016 Jan;38(1):65-70. doi: 10.1007/s10529-015-1951-9. Epub 2015 Sep 9.

4.

Spatial differentiation of gene expression in Aspergillus niger colony grown for sugar beet pulp utilization.

Benoit I, Zhou M, Vivas Duarte A, Downes DJ, Todd RB, Kloezen W, Post H, Heck AJ, Maarten Altelaar AF, de Vries RP.

Sci Rep. 2015 Aug 28;5:13592. doi: 10.1038/srep13592.

5.

Closely related fungi employ diverse enzymatic strategies to degrade plant biomass.

Benoit I, Culleton H, Zhou M, DiFalco M, Aguilar-Osorio G, Battaglia E, Bouzid O, Brouwer CPJM, El-Bushari HBO, Coutinho PM, Gruben BS, Hildén KS, Houbraken J, Barboza LAJ, Levasseur A, Majoor E, Mäkelä MR, Narang HM, Trejo-Aguilar B, van den Brink J, vanKuyk PA, Wiebenga A, McKie V, McCleary B, Tsang A, Henrissat B, de Vries RP.

Biotechnol Biofuels. 2015 Aug 1;8:107. doi: 10.1186/s13068-015-0285-0. eCollection 2015.

6.

Aromatic metabolism of filamentous fungi in relation to the presence of aromatic compounds in plant biomass.

Mäkelä MR, Marinović M, Nousiainen P, Liwanag AJ, Benoit I, Sipilä J, Hatakka A, de Vries RP, Hildén KS.

Adv Appl Microbiol. 2015;91:63-137. doi: 10.1016/bs.aambs.2014.12.001. Epub 2015 Feb 24. Review.

PMID:
25911233
7.

Sugar catabolism in Aspergillus and other fungi related to the utilization of plant biomass.

Khosravi C, Benocci T, Battaglia E, Benoit I, de Vries RP.

Adv Appl Microbiol. 2015;90:1-28. doi: 10.1016/bs.aambs.2014.09.005. Epub 2014 Nov 12. Review.

PMID:
25596028
8.

Preserved adrenal function in fully PCSK9-deficient subject.

Cariou B, Benoit I, Le May C.

Int J Cardiol. 2014 Sep 20;176(2):499-500. doi: 10.1016/j.ijcard.2014.07.057. Epub 2014 Jul 12. No abstract available.

PMID:
25062564
9.

Bacillus subtilis attachment to Aspergillus niger hyphae results in mutually altered metabolism.

Benoit I, van den Esker MH, Patyshakuliyeva A, Mattern DJ, Blei F, Zhou M, Dijksterhuis J, Brakhage AA, Kuipers OP, de Vries RP, Kovács ÁT.

Environ Microbiol. 2015 Jun;17(6):2099-113. doi: 10.1111/1462-2920.12564. Epub 2014 Aug 15.

PMID:
25040940
10.

A genomic survey of proteases in Aspergilli.

Budak SO, Zhou M, Brouwer C, Wiebenga A, Benoit I, Di Falco M, Tsang A, de Vries RP.

BMC Genomics. 2014 Jun 25;15:523. doi: 10.1186/1471-2164-15-523.

11.

The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown.

Levasseur A, Lomascolo A, Chabrol O, Ruiz-Dueñas FJ, Boukhris-Uzan E, Piumi F, Kües U, Ram AF, Murat C, Haon M, Benoit I, Arfi Y, Chevret D, Drula E, Kwon MJ, Gouret P, Lesage-Meessen L, Lombard V, Mariette J, Noirot C, Park J, Patyshakuliyeva A, Sigoillot JC, Wiebenga A, Wösten HA, Martin F, Coutinho PM, de Vries RP, Martínez AT, Klopp C, Pontarotti P, Henrissat B, Record E.

BMC Genomics. 2014 Jun 18;15:486. doi: 10.1186/1471-2164-15-486.

12.

Regulation of plant biomass utilization in Aspergillus.

Kowalczyk JE, Benoit I, de Vries RP.

Adv Appl Microbiol. 2014;88:31-56. doi: 10.1016/B978-0-12-800260-5.00002-4. Review.

PMID:
24767425
13.

Nutritional physiology of a rock-inhabiting, model microcolonial fungus from an ancestral lineage of the Chaetothyriales (Ascomycetes).

Nai C, Wong HY, Pannenbecker A, Broughton WJ, Benoit I, de Vries RP, Gueidan C, Gorbushina AA.

Fungal Genet Biol. 2013 Jul;56:54-66. doi: 10.1016/j.fgb.2013.04.001. Epub 2013 Apr 12.

PMID:
23587800
14.
15.

The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes.

Floudas D, Binder M, Riley R, Barry K, Blanchette RA, Henrissat B, Martínez AT, Otillar R, Spatafora JW, Yadav JS, Aerts A, Benoit I, Boyd A, Carlson A, Copeland A, Coutinho PM, de Vries RP, Ferreira P, Findley K, Foster B, Gaskell J, Glotzer D, Górecki P, Heitman J, Hesse C, Hori C, Igarashi K, Jurgens JA, Kallen N, Kersten P, Kohler A, Kües U, Kumar TK, Kuo A, LaButti K, Larrondo LF, Lindquist E, Ling A, Lombard V, Lucas S, Lundell T, Martin R, McLaughlin DJ, Morgenstern I, Morin E, Murat C, Nagy LG, Nolan M, Ohm RA, Patyshakuliyeva A, Rokas A, Ruiz-Dueñas FJ, Sabat G, Salamov A, Samejima M, Schmutz J, Slot JC, St John F, Stenlid J, Sun H, Sun S, Syed K, Tsang A, Wiebenga A, Young D, Pisabarro A, Eastwood DC, Martin F, Cullen D, Grigoriev IV, Hibbett DS.

Science. 2012 Jun 29;336(6089):1715-9. doi: 10.1126/science.1221748.

16.

Post-genomic approaches to understanding interactions between fungi and their environment.

de Vries RP, Benoit I, Doehlemann G, Kobayashi T, Magnuson JK, Panisko EA, Baker SE, Lebrun MH.

IMA Fungus. 2011 Jun;2(1):81-6. doi: 10.5598/imafungus.2011.02.01.11. Epub 2011 May 24.

17.

Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea.

Amselem J, Cuomo CA, van Kan JA, Viaud M, Benito EP, Couloux A, Coutinho PM, de Vries RP, Dyer PS, Fillinger S, Fournier E, Gout L, Hahn M, Kohn L, Lapalu N, Plummer KM, Pradier JM, Quévillon E, Sharon A, Simon A, ten Have A, Tudzynski B, Tudzynski P, Wincker P, Andrew M, Anthouard V, Beever RE, Beffa R, Benoit I, Bouzid O, Brault B, Chen Z, Choquer M, Collémare J, Cotton P, Danchin EG, Da Silva C, Gautier A, Giraud C, Giraud T, Gonzalez C, Grossetete S, Güldener U, Henrissat B, Howlett BJ, Kodira C, Kretschmer M, Lappartient A, Leroch M, Levis C, Mauceli E, Neuvéglise C, Oeser B, Pearson M, Poulain J, Poussereau N, Quesneville H, Rascle C, Schumacher J, Ségurens B, Sexton A, Silva E, Sirven C, Soanes DM, Talbot NJ, Templeton M, Yandava C, Yarden O, Zeng Q, Rollins JA, Lebrun MH, Dickman M.

PLoS Genet. 2011 Aug;7(8):e1002230. doi: 10.1371/journal.pgen.1002230. Epub 2011 Aug 18.

18.

Serum resistance to singlet oxygen in patients with diabetes mellitus in comparison to healthy donors.

Lhommeau I, Douillard S, Bigot E, Benoit I, Krempf M, Patrice T.

Metabolism. 2011 Sep;60(9):1340-8. doi: 10.1016/j.metabol.2011.02.004. Epub 2011 Apr 13.

PMID:
21489568
19.

Carbohydrate-active enzymes from the zygomycete fungus Rhizopus oryzae: a highly specialized approach to carbohydrate degradation depicted at genome level.

Battaglia E, Benoit I, van den Brink J, Wiebenga A, Coutinho PM, Henrissat B, de Vries RP.

BMC Genomics. 2011 Jan 17;12:38. doi: 10.1186/1471-2164-12-38.

20.

PCSK9 dominant negative mutant results in increased LDL catabolic rate and familial hypobetalipoproteinemia.

Cariou B, Ouguerram K, Zaïr Y, Guerois R, Langhi C, Kourimate S, Benoit I, Le May C, Gayet C, Belabbas K, Dufernez F, Chétiveaux M, Tarugi P, Krempf M, Benlian P, Costet P.

Arterioscler Thromb Vasc Biol. 2009 Dec;29(12):2191-7. doi: 10.1161/ATVBAHA.109.194191. Epub 2009 Sep 17.

PMID:
19762784
21.

Post-genomic insights into the plant polysaccharide degradation potential of Aspergillus nidulans and comparison to Aspergillus niger and Aspergillus oryzae.

Coutinho PM, Andersen MR, Kolenova K, vanKuyk PA, Benoit I, Gruben BS, Trejo-Aguilar B, Visser H, van Solingen P, Pakula T, Seiboth B, Battaglia E, Aguilar-Osorio G, de Jong JF, Ohm RA, Aguilar M, Henrissat B, Nielsen J, Stålbrand H, de Vries RP.

Fungal Genet Biol. 2009 Mar;46 Suppl 1:S161-S169.

PMID:
19618505
22.

A corticotroph pituitary adenoma as the initial presentation of familial glucocorticoid deficiency.

Benoit I, Drui D, Chaillous L, Dupas B, Mosnier JF, Charbonnel B, Cariou B.

Eur J Endocrinol. 2009 Jul;161(1):195-9. doi: 10.1530/EJE-09-0100. Epub 2009 May 7.

PMID:
19423561
23.

Biotechnological applications and potential of fungal feruloyl esterases based on prevalence, classification and biochemical diversity.

Benoit I, Danchin EG, Bleichrodt RJ, de Vries RP.

Biotechnol Lett. 2008 Mar;30(3):387-96. Epub 2007 Nov 1. Review.

PMID:
17973091
24.

Gene overexpression and biochemical characterization of the biotechnologically relevant chlorogenic acid hydrolase from Aspergillus niger.

Benoit I, Asther M, Bourne Y, Navarro D, Canaan S, Lesage-Meessen L, Herweijer M, Coutinho PM, Asther M, Record E.

Appl Environ Microbiol. 2007 Sep;73(17):5624-32. Epub 2007 Jul 13.

25.

Expression in Escherichia coli, refolding and crystallization of Aspergillus niger feruloyl esterase A using a serial factorial approach.

Benoit I, Coutard B, Oubelaid R, Asther M, Bignon C.

Protein Expr Purif. 2007 Sep;55(1):166-74. Epub 2007 Apr 10.

PMID:
17533138
26.

[Which anaesthesia for children undergoing MRI? An Internet survey in the French university hospitals].

Bordes M, Semjen F, Sautereau A, Nossin E, Benoit I, Meymat Y, Cros AM.

Ann Fr Anesth Reanim. 2007 Apr;26(4):287-91. Epub 2007 Mar 26. French.

PMID:
17368817
27.

Respective importance of protein folding and glycosylation in the thermal stability of recombinant feruloyl esterase A.

Benoit I, Asther M, Sulzenbacher G, Record E, Marmuse L, Parsiegla G, Gimbert I, Asther M, Bignon C.

FEBS Lett. 2006 Oct 30;580(25):5815-21. Epub 2006 Sep 27.

28.

Feruloyl esterases as a tool for the release of phenolic compounds from agro-industrial by-products.

Benoit I, Navarro D, Marnet N, Rakotomanomana N, Lesage-Meessen L, Sigoillot JC, Asther M, Asther M.

Carbohydr Res. 2006 Aug 14;341(11):1820-7. Epub 2006 May 15.

PMID:
16697997
29.

Homologous expression of the feruloyl esterase B gene from Aspergillus niger and characterization of the recombinant enzyme.

Levasseur A, Benoit I, Asther M, Asther M, Record E.

Protein Expr Purif. 2004 Sep;37(1):126-33.

PMID:
15294290
30.

-A difficult intubation of an infant with McKusick-Kaufman syndrome. Failure of the laryngeal mask-fibroscope sequence-.

el Hammar F, Dubreuil M, Benoît I, Meymat Y.

Ann Fr Anesth Reanim. 1998;17(3):240-2. French.

PMID:
9750736
31.

[Pharmacokinetic and clinical evaluation of rectal hydrophilic gel of methohexital in pediatric surgery].

Michel-Guéroult P, Benoit I, Grellet J, Meynat Y, Merlet JP, Saux MC.

Therapie. 1993 Jan-Feb;48(1):27-32. French.

PMID:
8356542
32.

Accommodation related to the action of ethanol on frog sciatic nerve.

Quevedo L, Baldeig J, Concha J, Benoit I.

Pharmacology. 1978;17(5):249-53.

PMID:
704662
33.

[The action of glutamic acid in deep-seated mental deficiency].

DESCLAUX P, BENOIT I, AUSSAGEL S.

Rev Prat. 1953 Apr 21;3(12):831-8. Undetermined Language. No abstract available.

PMID:
13075562

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