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Items: 1 to 50 of 102

1.

Ambient pH alters protein content of outer membrane vesicles, driving host development in a beneficial symbiosis.

Lynch JB, Schwartzman JA, Bennett BD, McAnulty SJ, Knop M, Nyholm SV, Ruby EG.

J Bacteriol. 2019 Jul 22. pii: JB.00319-19. doi: 10.1128/JB.00319-19. [Epub ahead of print]

PMID:
31331976
2.

NF-Y controls fidelity of transcription initiation at gene promoters through maintenance of the nucleosome-depleted region.

Oldfield AJ, Henriques T, Kumar D, Burkholder AB, Cinghu S, Paulet D, Bennett BD, Yang P, Scruggs BS, Lavender CA, Rivals E, Adelman K, Jothi R.

Nat Commun. 2019 Jul 11;10(1):3072. doi: 10.1038/s41467-019-10905-7.

3.

Mechanisms of toxicity by and resistance to ferrous iron in anaerobic systems.

Bennett BD, Gralnick JA.

Free Radic Biol Med. 2019 Jun 25. pii: S0891-5849(18)32165-8. doi: 10.1016/j.freeradbiomed.2019.06.027. [Epub ahead of print] Review.

PMID:
31251977
4.

DNA methylation in mice is influenced by genetics as well as sex and life experience.

Grimm SA, Shimbo T, Takaku M, Thomas JW, Auerbach S, Bennett BD, Bucher JR, Burkholder AB, Day F, Du Y, Duncan CG, French JE, Foley JF, Li J, Merrick BA, Tice RR, Wang T, Xu X; NISC Comparative Sequencing Program, Bushel PR, Fargo DC, Mullikin JC, Wade PA.

Nat Commun. 2019 Jan 18;10(1):305. doi: 10.1038/s41467-018-08067-z.

5.

Epigenome-wide meta-analysis of DNA methylation and childhood asthma.

Reese SE, Xu CJ, den Dekker HT, Lee MK, Sikdar S, Ruiz-Arenas C, Merid SK, Rezwan FI, Page CM, Ullemar V, Melton PE, Oh SS, Yang IV, Burrows K, Söderhäll C, Jima DD, Gao L, Arathimos R, Küpers LK, Wielscher M, Rzehak P, Lahti J, Laprise C, Madore AM, Ward J, Bennett BD, Wang T, Bell DA; BIOS consortium, Vonk JM, Håberg SE, Zhao S, Karlsson R, Hollams E, Hu D, Richards AJ, Bergström A, Sharp GC, Felix JF, Bustamante M, Gruzieva O, Maguire RL, Gilliland F, Baïz N, Nohr EA, Corpeleijn E, Sebert S, Karmaus W, Grote V, Kajantie E, Magnus MC, Örtqvist AK, Eng C, Liu AH, Kull I, Jaddoe VWV, Sunyer J, Kere J, Hoyo C, Annesi-Maesano I, Arshad SH, Koletzko B, Brunekreef B, Binder EB, Räikkönen K, Reischl E, Holloway JW, Jarvelin MR, Snieder H, Kazmi N, Breton CV, Murphy SK, Pershagen G, Anto JM, Relton CL, Schwartz DA, Burchard EG, Huang RC, Nystad W, Almqvist C, Henderson AJ, Melén E, Duijts L, Koppelman GH, London SJ.

J Allergy Clin Immunol. 2019 Jun;143(6):2062-2074. doi: 10.1016/j.jaci.2018.11.043. Epub 2018 Dec 21.

6.

Dioxin and AHR impairs mesoderm gene expression and cardiac differentiation in human embryonic stem cells.

Fu H, Wang L, Wang J, Bennett BD, Li JL, Zhao B, Hu G.

Sci Total Environ. 2019 Feb 15;651(Pt 1):1038-1046. doi: 10.1016/j.scitotenv.2018.09.247. Epub 2018 Sep 20.

PMID:
30266049
7.

Revealing a human p53 universe.

Nguyen TT, Grimm SA, Bushel PR, Li J, Li Y, Bennett BD, Lavender CA, Ward JM, Fargo DC, Anderson CW, Li L, Resnick MA, Menendez D.

Nucleic Acids Res. 2018 Sep 19;46(16):8153-8167. doi: 10.1093/nar/gky720.

8.

Dosage compensation and DNA methylation landscape of the X chromosome in mouse liver.

Duncan CG, Grimm SA, Morgan DL, Bushel PR, Bennett BD; NISC Comparative Sequencing Program, Roberts JD, Tyson FL, Merrick BA, Wade PA.

Sci Rep. 2018 Jul 4;8(1):10138. doi: 10.1038/s41598-018-28356-3.

9.

Identification of Smoking-Associated Differentially Methylated Regions Using Reduced Representation Bisulfite Sequencing and Cell type-Specific Enhancer Activation and Gene Expression.

Wan M, Bennett BD, Pittman GS, Campbell MR, Reynolds LM, Porter DK, Crowl CL, Wang X, Su D, Englert NA, Thompson IJ, Liu Y, Bell DA.

Environ Health Perspect. 2018 Apr 27;126(4):047015. doi: 10.1289/EHP2395.

10.

GATA3 zinc finger 2 mutations reprogram the breast cancer transcriptional network.

Takaku M, Grimm SA, Roberts JD, Chrysovergis K, Bennett BD, Myers P, Perera L, Tucker CJ, Perou CM, Wade PA.

Nat Commun. 2018 Mar 13;9(1):1059. doi: 10.1038/s41467-018-03478-4.

11.

Common and divergent features of galactose-1-phosphate and fructose-1-phosphate toxicity in yeast.

Gibney PA, Schieler A, Chen JC, Bacha-Hummel JM, Botstein M, Volpe M, Silverman SJ, Xu Y, Bennett BD, Rabinowitz JD, Botstein D.

Mol Biol Cell. 2018 Apr 15;29(8):897-910. doi: 10.1091/mbc.E17-11-0666. Epub 2018 Mar 30.

12.

Survival of Anaerobic Fe2+ Stress Requires the ClpXP Protease.

Bennett BD, Redford KE, Gralnick JA.

J Bacteriol. 2018 Mar 26;200(8). pii: e00671-17. doi: 10.1128/JB.00671-17. Print 2018 Apr 15.

13.

MgtE Homolog FicI Acts as a Secondary Ferrous Iron Importer in Shewanella oneidensis Strain MR-1.

Bennett BD, Redford KE, Gralnick JA.

Appl Environ Microbiol. 2018 Mar 1;84(6). pii: e01245-17. doi: 10.1128/AEM.01245-17. Print 2018 Mar 15.

14.

Rif1 promotes a repressive chromatin state to safeguard against endogenous retrovirus activation.

Li P, Wang L, Bennett BD, Wang J, Li J, Qin Y, Takaku M, Wade PA, Wong J, Hu G.

Nucleic Acids Res. 2017 Dec 15;45(22):12723-12738. doi: 10.1093/nar/gkx884.

15.

Correction: Distinct Epigenetic Effects of Tobacco Smoking in Whole Blood and among Leukocyte Subtypes.

Su D, Wang X, Campbell MR, Porter DK, Pittman GS, Bennett BD, Wan M, Englert NA, Crowl CL, Gimple RC, Adamski KN, Huang Z, Murphy SK, Bell DA.

PLoS One. 2017 May 17;12(5):e0178308. doi: 10.1371/journal.pone.0178308. eCollection 2017.

16.

goSTAG: gene ontology subtrees to tag and annotate genes within a set.

Bennett BD, Bushel PR.

Source Code Biol Med. 2017 Apr 13;12:6. doi: 10.1186/s13029-017-0066-1. eCollection 2017.

17.

ORIO (Online Resource for Integrative Omics): a web-based platform for rapid integration of next generation sequencing data.

Lavender CA, Shapiro AJ, Burkholder AB, Bennett BD, Adelman K, Fargo DC.

Nucleic Acids Res. 2017 Jun 2;45(10):5678-5690. doi: 10.1093/nar/gkx270.

18.

Distinct Epigenetic Effects of Tobacco Smoking in Whole Blood and among Leukocyte Subtypes.

Su D, Wang X, Campbell MR, Porter DK, Pittman GS, Bennett BD, Wan M, Englert NA, Crowl CL, Gimple RN, Adamski KN, Huang Z, Murphy SK, Bell DA.

PLoS One. 2016 Dec 9;11(12):e0166486. doi: 10.1371/journal.pone.0166486. eCollection 2016. Erratum in: PLoS One. 2017 May 17;12 (5):e0178308.

19.

CNOT3-Dependent mRNA Deadenylation Safeguards the Pluripotent State.

Zheng X, Yang P, Lackford B, Bennett BD, Wang L, Li H, Wang Y, Miao Y, Foley JF, Fargo DC, Jin Y, Williams CJ, Jothi R, Hu G.

Stem Cell Reports. 2016 Nov 8;7(5):897-910. doi: 10.1016/j.stemcr.2016.09.007. Epub 2016 Oct 13.

20.

INO80 is required for oncogenic transcription and tumor growth in non-small cell lung cancer.

Zhang S, Zhou B, Wang L, Li P, Bennett BD, Snyder R, Garantziotis S, Fargo DC, Cox AD, Chen L, Hu G.

Oncogene. 2017 Mar;36(10):1430-1439. doi: 10.1038/onc.2016.311. Epub 2016 Sep 19.

21.

Downstream Antisense Transcription Predicts Genomic Features That Define the Specific Chromatin Environment at Mammalian Promoters.

Lavender CA, Cannady KR, Hoffman JA, Trotter KW, Gilchrist DA, Bennett BD, Burkholder AB, Burd CJ, Fargo DC, Archer TK.

PLoS Genet. 2016 Aug 3;12(8):e1006224. doi: 10.1371/journal.pgen.1006224. eCollection 2016 Aug.

22.

INO80 governs superenhancer-mediated oncogenic transcription and tumor growth in melanoma.

Zhou B, Wang L, Zhang S, Bennett BD, He F, Zhang Y, Xiong C, Han L, Diao L, Li P, Fargo DC, Cox AD, Hu G.

Genes Dev. 2016 Jun 15;30(12):1440-53. doi: 10.1101/gad.277178.115.

23.

A Serial shRNA Screen for Roadblocks to Reprogramming Identifies the Protein Modifier SUMO2.

Borkent M, Bennett BD, Lackford B, Bar-Nur O, Brumbaugh J, Wang L, Du Y, Fargo DC, Apostolou E, Cheloufi S, Maherali N, Elledge SJ, Hu G, Hochedlinger K.

Stem Cell Reports. 2016 May 10;6(5):704-716. doi: 10.1016/j.stemcr.2016.02.004. Epub 2016 Mar 3.

24.

A Ferrous Iron Exporter Mediates Iron Resistance in Shewanella oneidensis MR-1.

Bennett BD, Brutinel ED, Gralnick JA.

Appl Environ Microbiol. 2015 Nov;81(22):7938-44. doi: 10.1128/AEM.02835-15. Epub 2015 Sep 4.

25.

DNA Methylation of the Aryl Hydrocarbon Receptor Repressor Associations With Cigarette Smoking and Subclinical Atherosclerosis.

Reynolds LM, Wan M, Ding J, Taylor JR, Lohman K, Su D, Bennett BD, Porter DK, Gimple R, Pittman GS, Wang X, Howard TD, Siscovick D, Psaty BM, Shea S, Burke GL, Jacobs DR Jr, Rich SS, Hixson JE, Stein JH, Stunnenberg H, Barr RG, Kaufman JD, Post WS, Hoeschele I, Herrington DM, Bell DA, Liu Y.

Circ Cardiovasc Genet. 2015 Oct;8(5):707-16. doi: 10.1161/CIRCGENETICS.115.001097. Epub 2015 Aug 25.

26.

LIN28A Modulates Splicing and Gene Expression Programs in Breast Cancer Cells.

Yang J, Bennett BD, Luo S, Inoue K, Grimm SA, Schroth GP, Bushel PR, Kinyamu HK, Archer TK.

Mol Cell Biol. 2015 Sep;35(18):3225-43. doi: 10.1128/MCB.00426-15. Epub 2015 Jul 6.

27.

Expression of ORAII, a plasma membrane resident subunit of the CRAC channel, in rodent and non-rodent species.

Guzman R, Valente EG, Pretorius J, Pacheco E, Qi M, Bennett BD, Fong DH, Lin FF, Bi V, McBride HJ.

J Histochem Cytochem. 2014 Dec;62(12):864-78. doi: 10.1369/0022155414554926. Epub 2014 Sep 23.

28.

The pathology milestones and the next accreditation system.

Naritoku WY, Alexander CB, Bennett BD, Black-Schaffer WS, Brissette MD, Grimes MM, Hoffman RD, Hunt JL, Iezzoni JC, Johnson R, Kozel J, Mendoza RM, Post MD, Powell SZ, Procop GW, Steinberg JJ, Thorsen LM, Nestler SP.

Arch Pathol Lab Med. 2014 Mar;138(3):307-15. doi: 10.5858/arpa.2013-0260-SA.

PMID:
24576024
29.

Distinct and overlapping sarcoma subtypes initiated from muscle stem and progenitor cells.

Blum JM, Añó L, Li Z, Van Mater D, Bennett BD, Sachdeva M, Lagutina I, Zhang M, Mito JK, Dodd LG, Cardona DM, Dodd RD, Williams N, Ma Y, Lepper C, Linardic CM, Mukherjee S, Grosveld GC, Fan CM, Kirsch DG.

Cell Rep. 2013 Nov 27;5(4):933-40. doi: 10.1016/j.celrep.2013.10.020. Epub 2013 Nov 14.

30.

Altered pregnancy outcomes in mice following treatment with the hyperglycaemia mimetic, glucosamine, during the periconception period.

Schelbach CJ, Robker RL, Bennett BD, Gauld AD, Thompson JG, Kind KL.

Reprod Fertil Dev. 2013;25(2):405-16. doi: 10.1071/RD11313.

PMID:
23445817
31.

A predictive framework for integrating disparate genomic data types using sample-specific gene set enrichment analysis and multi-task learning.

Bennett BD, Xiong Q, Mukherjee S, Furey TS.

PLoS One. 2012;7(9):e44635. doi: 10.1371/journal.pone.0044635. Epub 2012 Sep 13. Erratum in: PLoS One. 2013;8(9). doi:10.1371/annotation/c04cea96-35f4-4578-a891-639e30fddd59.

32.

Senior pathology resident in-service examination scores correlate with outcomes of the American Board of Pathology certifying examinations.

Rinder HM, Grimes MM, Wagner J, Bennett BD; RISE Committee, American Society for Clinical Pathology and the American Board of Pathology.

Am J Clin Pathol. 2011 Oct;136(4):499-506. doi: 10.1309/AJCPA7O4BBUGLSWW.

PMID:
21917671
33.

Certification and maintenance of certification: updates from the American Board of Pathology.

Bennett BD, Grimes MM.

Hum Pathol. 2011 Jun;42(6):770-3. doi: 10.1016/j.humpath.2010.11.007. Epub 2011 Feb 11.

PMID:
21315409
34.

Quiescent fibroblasts exhibit high metabolic activity.

Lemons JM, Feng XJ, Bennett BD, Legesse-Miller A, Johnson EL, Raitman I, Pollina EA, Rabitz HA, Rabinowitz JD, Coller HA.

PLoS Biol. 2010 Oct 19;8(10):e1000514. doi: 10.1371/journal.pbio.1000514.

35.

Inhibition of glutaminase preferentially slows growth of glioma cells with mutant IDH1.

Seltzer MJ, Bennett BD, Joshi AD, Gao P, Thomas AG, Ferraris DV, Tsukamoto T, Rojas CJ, Slusher BS, Rabinowitz JD, Dang CV, Riggins GJ.

Cancer Res. 2010 Nov 15;70(22):8981-7. doi: 10.1158/0008-5472.CAN-10-1666. Epub 2010 Nov 2.

36.

Cancer-associated IDH1 mutations produce 2-hydroxyglutarate.

Dang L, White DW, Gross S, Bennett BD, Bittinger MA, Driggers EM, Fantin VR, Jang HG, Jin S, Keenan MC, Marks KM, Prins RM, Ward PS, Yen KE, Liau LM, Rabinowitz JD, Cantley LC, Thompson CB, Vander Heiden MG, Su SM.

Nature. 2010 Jun 17;465(7300):966. doi: 10.1038/nature09132. No abstract available.

37.

Regulatory and metabolic rewiring during laboratory evolution of ethanol tolerance in E. coli.

Goodarzi H, Bennett BD, Amini S, Reaves ML, Hottes AK, Rabinowitz JD, Tavazoie S.

Mol Syst Biol. 2010 Jun 8;6:378. doi: 10.1038/msb.2010.33.

38.

The common feature of leukemia-associated IDH1 and IDH2 mutations is a neomorphic enzyme activity converting alpha-ketoglutarate to 2-hydroxyglutarate.

Ward PS, Patel J, Wise DR, Abdel-Wahab O, Bennett BD, Coller HA, Cross JR, Fantin VR, Hedvat CV, Perl AE, Rabinowitz JD, Carroll M, Su SM, Sharp KA, Levine RL, Thompson CB.

Cancer Cell. 2010 Mar 16;17(3):225-34. doi: 10.1016/j.ccr.2010.01.020. Epub 2010 Feb 18.

39.

Cancer-associated IDH1 mutations produce 2-hydroxyglutarate.

Dang L, White DW, Gross S, Bennett BD, Bittinger MA, Driggers EM, Fantin VR, Jang HG, Jin S, Keenan MC, Marks KM, Prins RM, Ward PS, Yen KE, Liau LM, Rabinowitz JD, Cantley LC, Thompson CB, Vander Heiden MG, Su SM.

Nature. 2009 Dec 10;462(7274):739-44. doi: 10.1038/nature08617.

40.

Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli.

Bennett BD, Kimball EH, Gao M, Osterhout R, Van Dien SJ, Rabinowitz JD.

Nat Chem Biol. 2009 Aug;5(8):593-9. doi: 10.1038/nchembio.186. Epub 2009 Jun 28.

41.

Obese women exhibit differences in ovarian metabolites, hormones, and gene expression compared with moderate-weight women.

Robker RL, Akison LK, Bennett BD, Thrupp PN, Chura LR, Russell DL, Lane M, Norman RJ.

J Clin Endocrinol Metab. 2009 May;94(5):1533-40. doi: 10.1210/jc.2008-2648. Epub 2009 Feb 17.

PMID:
19223519
42.

Systems-level metabolic flux profiling identifies fatty acid synthesis as a target for antiviral therapy.

Munger J, Bennett BD, Parikh A, Feng XJ, McArdle J, Rabitz HA, Shenk T, Rabinowitz JD.

Nat Biotechnol. 2008 Oct;26(10):1179-86. doi: 10.1038/nbt.1500. Epub 2008 Sep 28.

43.

Kinetic flux profiling for quantitation of cellular metabolic fluxes.

Yuan J, Bennett BD, Rabinowitz JD.

Nat Protoc. 2008;3(8):1328-40. doi: 10.1038/nprot.2008.131.

44.

Absolute quantitation of intracellular metabolite concentrations by an isotope ratio-based approach.

Bennett BD, Yuan J, Kimball EH, Rabinowitz JD.

Nat Protoc. 2008;3(8):1299-311. doi: 10.1038/nprot.2008.107.

45.

Analytical strategies for LC-MS-based targeted metabolomics.

Lu W, Bennett BD, Rabinowitz JD.

J Chromatogr B Analyt Technol Biomed Life Sci. 2008 Aug 15;871(2):236-42. doi: 10.1016/j.jchromb.2008.04.031. Epub 2008 Apr 29.

46.

Peroxisome proliferator-activated receptor-gamma agonist rosiglitazone reverses the adverse effects of diet-induced obesity on oocyte quality.

Minge CE, Bennett BD, Norman RJ, Robker RL.

Endocrinology. 2008 May;149(5):2646-56. doi: 10.1210/en.2007-1570. Epub 2008 Feb 14.

PMID:
18276752
47.

Maintenance of certification: how will it affect pathology practice?

Davey DD, Bennett BD.

Arch Pathol Lab Med. 2007 Sep;131(9):1334-6. No abstract available.

PMID:
17824786
48.

Conservation of the metabolomic response to starvation across two divergent microbes.

Brauer MJ, Yuan J, Bennett BD, Lu W, Kimball E, Botstein D, Rabinowitz JD.

Proc Natl Acad Sci U S A. 2006 Dec 19;103(51):19302-7. Epub 2006 Dec 11.

49.

Certification from the American Board of Pathology: getting it and keeping it.

Bennett BD.

Hum Pathol. 2006 Aug;37(8):978-81. Epub 2006 Jun 16.

PMID:
16867858
50.

Maintenance of certification for pathologists: what we know so far.

McKenna RW, Davey DD, Johnson RL, Keren D, Madara JL, Weiss SW, Bennett BD; Maintenance of Certification Committee, American Board of Pathology.

Am J Clin Pathol. 2005 Dec;124 Suppl:S5-7. No abstract available.

PMID:
16468413

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